Wall clock time and date at job start Tue Mar 31 2020 20:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47369 * 2 1 4 4 C 1.50703 * 109.47053 * 240.00365 * 2 1 3 5 5 H 1.08004 * 119.99504 * 275.01695 * 4 2 1 6 6 C 1.37875 * 120.00410 * 95.01324 * 4 2 1 7 7 N 1.31513 * 120.00311 * 184.89999 * 6 4 2 8 8 Si 1.86801 * 119.99691 * 4.89756 * 6 4 2 9 9 H 1.48507 * 109.46956 * 84.80132 * 8 6 4 10 10 H 1.48502 * 109.47107 * 204.79935 * 8 6 4 11 11 H 1.48503 * 109.47355 * 324.80460 * 8 6 4 12 12 N 1.46503 * 109.47471 * 120.00307 * 2 1 3 13 13 C 1.46499 * 120.00020 * 59.99708 * 12 2 1 14 14 S 1.65598 * 119.99895 * 240.00054 * 12 2 1 15 15 O 1.42101 * 106.39959 * 203.53899 * 14 12 2 16 16 O 1.42103 * 106.40215 * 336.45245 * 14 12 2 17 17 N 1.65595 * 107.22176 * 89.99925 * 14 12 2 18 18 C 1.46502 * 119.99979 * 64.99330 * 17 14 12 19 19 H 1.08999 * 115.55265 * 359.33438 * 18 17 14 20 20 C 1.52997 * 117.49912 * 213.62396 * 18 17 14 21 21 C 1.52997 * 60.00269 * 252.51376 * 20 18 17 22 22 C 1.53008 * 117.51915 * 107.47868 * 21 20 18 23 23 C 1.50700 * 117.50157 * 252.51106 * 21 20 18 24 24 C 1.38238 * 119.99716 * 68.34660 * 23 21 20 25 25 C 1.38233 * 119.99915 * 179.78969 * 24 23 21 26 26 C 1.38246 * 119.99812 * 0.46348 * 25 24 23 27 27 C 1.38233 * 119.99847 * 359.76923 * 26 25 24 28 28 C 1.38233 * 120.00325 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47313 * 174.84152 * 1 2 3 30 30 H 1.09002 * 109.46723 * 294.83922 * 1 2 3 31 31 H 1.08995 * 109.47371 * 54.83720 * 1 2 3 32 32 H 0.96996 * 120.00355 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47013 * 89.99981 * 13 12 2 34 34 H 1.08999 * 109.47297 * 210.00245 * 13 12 2 35 35 H 1.09007 * 109.46929 * 329.99987 * 13 12 2 36 36 H 0.96999 * 120.00141 * 245.00202 * 17 14 12 37 37 H 1.09002 * 117.49856 * 0.02562 * 20 18 17 38 38 H 1.08998 * 117.50082 * 145.02372 * 20 18 17 39 39 H 1.08995 * 109.46572 * 351.37638 * 22 21 20 40 40 H 1.09000 * 109.46638 * 111.37051 * 22 21 20 41 41 H 1.08997 * 109.47105 * 231.37417 * 22 21 20 42 42 H 1.07999 * 120.00174 * 359.97438 * 24 23 21 43 43 H 1.08000 * 120.00466 * 180.25121 * 25 24 23 44 44 H 1.07993 * 119.99720 * 179.79125 * 26 25 24 45 45 H 1.07995 * 119.99792 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.00421 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1352 -1.7855 -1.2292 6 6 2.3605 0.0122 -2.3580 7 7 2.7065 -0.6130 -3.4621 8 14 2.3136 1.8791 -2.3173 9 1 3.5988 2.3950 -1.7810 10 1 2.1070 2.3992 -3.6929 11 1 1.1980 2.3275 -1.4457 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9813 16 8 3.5796 1.1828 1.5747 17 7 1.9609 0.8089 3.3998 18 6 1.1511 -0.0354 4.2817 19 1 1.2612 -1.1099 4.1351 20 6 -0.2297 0.4851 4.6856 21 6 0.9081 0.4618 5.7081 22 6 1.5300 1.8025 6.1045 23 6 0.8389 -0.5715 6.8029 24 6 0.9872 -1.9118 6.4986 25 6 0.9281 -2.8593 7.5033 26 6 0.7111 -2.4673 8.8112 27 6 0.5580 -1.1275 9.1147 28 6 0.6213 -0.1796 8.1106 29 1 -0.3634 -1.0235 -0.0924 30 1 -0.3633 0.4317 0.9326 31 1 -0.3634 0.5918 -0.8401 32 1 2.9370 -0.1047 -4.2554 33 1 2.4158 -2.7377 0.9715 34 1 1.6239 -2.2853 2.5001 35 1 0.6904 -2.3002 0.9846 36 1 1.9056 1.7749 3.4682 37 1 -0.5359 1.4555 4.2949 38 1 -1.0284 -0.2470 4.8047 39 1 1.1431 2.5882 5.4557 40 1 1.2762 2.0285 7.1401 41 1 2.6134 1.7455 5.9999 42 1 1.1523 -2.2184 5.4763 43 1 1.0480 -3.9062 7.2662 44 1 0.6615 -3.2079 9.5956 45 1 0.3880 -0.8213 10.1363 46 1 0.5013 0.8672 8.3476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619750342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:04 Heat of formation + Delta-G solvation = -45.115079 kcal Electronic energy + Delta-G solvation = -28166.171021 eV Core-core repulsion = 24375.483681 eV Total energy + Delta-G solvation = -3790.687340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91311 -38.67957 -38.36131 -37.98038 -36.95657 -34.51585 -33.96997 -31.91460 -31.66371 -30.97089 -29.27759 -27.36850 -26.99353 -24.00277 -23.64438 -22.76503 -22.46800 -20.53037 -20.30711 -19.27482 -18.99667 -18.23737 -17.75972 -17.37603 -16.80666 -16.11451 -16.04110 -15.57939 -15.32114 -15.05356 -14.79644 -14.60667 -14.53431 -14.38276 -14.29525 -13.82826 -13.62952 -13.46199 -13.42707 -13.37350 -13.22358 -13.03299 -13.01442 -12.98885 -12.80472 -12.62958 -12.54866 -12.38434 -12.03051 -11.87860 -11.80690 -11.78270 -11.24525 -11.13762 -10.74136 -10.04074 -9.77724 -9.74566 -9.39482 -8.32986 -6.36134 -0.44840 0.45901 0.54658 1.29223 1.39591 1.42554 1.92136 2.31491 2.52426 2.69494 3.05990 3.10000 3.30547 3.63782 3.65093 3.77412 3.87425 4.00783 4.12004 4.21620 4.28190 4.35638 4.45831 4.61694 4.66671 4.70108 4.81485 4.84271 4.88670 4.89861 4.93337 4.94855 4.99005 5.10454 5.18270 5.22742 5.25873 5.29650 5.34765 5.53401 5.59202 5.64856 5.67997 5.74713 5.86936 6.08005 6.16288 6.32785 6.70605 7.29343 8.83014 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.003275 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.106117 B = 8547.067101 C = 8861.669391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.236 3.764 3 H 0.045 0.955 4 C -0.518 4.518 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.938 5.938 8 Si 0.912 3.088 9 H -0.281 1.281 10 H -0.278 1.278 11 H -0.231 1.231 12 N -0.990 5.990 13 C 0.102 3.898 14 S 2.789 3.211 15 O -1.007 7.007 16 O -1.015 7.015 17 N -1.084 6.084 18 C 0.077 3.923 19 H 0.133 0.867 20 C -0.147 4.147 21 C -0.097 4.097 22 C -0.119 4.119 23 C -0.055 4.055 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.121 4.121 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.267 0.733 33 H 0.034 0.966 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.423 0.577 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.120 0.880 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 2.008 25.835 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.131 3.869 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.068 0.932 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.736 3.264 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.153 1.153 12 N -0.832 5.832 13 C -0.043 4.043 14 S 2.799 3.201 15 O -0.990 6.990 16 O -0.999 6.999 17 N -0.843 5.843 18 C -0.031 4.031 19 H 0.150 0.850 20 C -0.186 4.186 21 C -0.099 4.099 22 C -0.176 4.176 23 C -0.055 4.055 24 C -0.157 4.157 25 C -0.144 4.144 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.139 4.139 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.259 0.741 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.161 0.839 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.244 1.884 25.616 27.298 hybrid contribution 0.280 0.813 -0.840 1.202 sum -8.964 2.697 24.777 26.486 Atomic orbital electron populations 1.22103 0.95060 1.02058 1.00791 1.18984 0.93472 0.92057 0.82357 0.93681 1.21465 1.43118 0.94924 0.96253 0.93196 1.25739 0.94222 1.02602 0.95167 1.70006 1.47534 1.37684 1.02580 0.86265 0.80394 0.81599 0.78113 1.20722 1.20357 1.15345 1.57666 1.69978 1.21009 1.34549 1.21385 1.01851 0.80288 1.00807 1.01467 0.73673 0.72522 0.72431 1.93531 1.69736 1.61184 1.74562 1.93555 1.75645 1.57516 1.73216 1.55323 1.60944 1.17558 1.50501 1.21723 0.95720 0.94317 0.91373 0.84969 1.23770 0.91140 1.04534 0.99162 1.20759 1.03678 0.96924 0.88588 1.21390 1.00152 0.93101 1.02970 1.19156 0.99747 0.92781 0.93846 1.21262 1.01214 0.93129 1.00141 1.21398 0.99590 1.00130 0.93285 1.21472 0.99954 0.96857 0.96777 1.21455 0.99477 0.93077 1.00089 1.21210 1.00187 1.00731 0.91794 0.92148 0.91613 0.93185 0.92373 0.94757 0.90125 0.89554 0.74083 0.86456 0.86694 0.90780 0.90085 0.92943 0.86199 0.84759 0.84178 0.83881 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 9.04 71.98 0.65 -4.37 16 2 C 0.24 10.44 2.28 44.24 0.10 10.55 16 3 H 0.05 2.11 4.06 -2.39 -0.01 2.10 16 4 C -0.52 -28.52 8.82 25.60 0.23 -28.30 16 5 H 0.05 3.00 7.67 -2.91 -0.02 2.97 16 6 C 0.02 1.27 5.47 84.65 0.46 1.73 16 7 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16 8 Si 0.91 44.46 26.99 68.60 1.85 46.31 16 9 H -0.28 -14.38 7.11 99.48 0.71 -13.67 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.23 -9.88 6.82 99.48 0.68 -9.21 16 12 N -0.99 -38.27 3.12 -520.44 -1.62 -39.89 16 13 C 0.10 3.35 9.39 127.77 1.20 4.55 16 14 S 2.79 104.76 6.07 -56.49 -0.34 104.42 16 15 O -1.01 -41.24 16.97 -128.00 -2.17 -43.41 16 16 O -1.02 -46.31 16.70 -128.00 -2.14 -48.45 16 17 N -1.08 -28.14 5.74 -169.38 -0.97 -29.11 16 18 C 0.08 1.65 5.80 44.99 0.26 1.92 16 19 H 0.13 2.90 4.71 -2.39 -0.01 2.89 16 20 C -0.15 -2.34 9.80 30.59 0.30 -2.04 16 21 C -0.10 -1.76 2.55 -52.93 -0.13 -1.89 16 22 C -0.12 -1.89 8.86 71.98 0.64 -1.25 16 23 C -0.05 -1.04 5.45 -19.86 -0.11 -1.15 16 24 C -0.14 -2.78 9.39 22.27 0.21 -2.57 16 25 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 26 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 27 C -0.12 -1.75 10.05 22.27 0.22 -1.53 16 28 C -0.12 -1.94 9.27 22.27 0.21 -1.73 16 29 H 0.06 2.07 6.88 -2.39 -0.02 2.05 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 2.07 6.46 -2.39 -0.02 2.06 16 35 H 0.09 2.57 6.53 -2.38 -0.02 2.55 16 36 H 0.42 9.20 8.13 -96.75 -0.79 8.41 16 37 H 0.12 1.60 8.05 -2.39 -0.02 1.58 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.07 0.98 7.63 -2.39 -0.02 0.96 16 40 H 0.08 1.01 6.14 -2.39 -0.01 0.99 16 41 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 2.36 5.93 -2.91 -0.02 2.34 16 43 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 44 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.14 1.67 6.45 -2.91 -0.02 1.65 16 Total: -1.00 -75.35 378.69 -0.23 -75.58 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.19 Total: 22.07 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.68 Total: -29.80 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -2.30 Total: -126.71 kcal Atomic # 8 Polarization: -87.55 SS G_CDS: -4.31 Total: -91.86 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.85 Total: 46.31 kcal Atomic # 16 Polarization: 104.76 SS G_CDS: -0.34 Total: 104.42 kcal Total: -75.35 -0.23 -75.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619750342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.462 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds