Wall clock time and date at job start Tue Mar 31 2020 20:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36002 * 117.00045 * 2 1 4 4 C 1.38691 * 120.04277 * 359.97438 * 3 2 1 5 5 C 1.38200 * 120.08816 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.18196 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.95869 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 265.00312 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.20827 * 120.00253 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00181 * 179.97438 * 9 8 7 12 12 C 1.45197 * 117.00518 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.46946 * 330.00688 * 12 11 9 14 14 C 1.53001 * 109.46868 * 89.99980 * 12 11 9 15 15 C 1.50693 * 109.47699 * 210.00702 * 12 11 9 16 16 H 1.08007 * 120.00023 * 359.97438 * 15 12 11 17 17 C 1.37874 * 120.00228 * 180.02562 * 15 12 11 18 18 N 1.31511 * 119.99968 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99923 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.46704 * 90.00030 * 19 17 15 21 21 H 1.48500 * 109.46906 * 209.99834 * 19 17 15 22 22 H 1.48493 * 109.47226 * 330.00304 * 19 17 15 23 23 C 1.38641 * 120.08967 * 0.23463 * 6 5 4 24 24 O 1.35997 * 120.04691 * 179.74490 * 23 6 5 25 25 C 1.42901 * 116.99885 * 90.00225 * 24 23 6 26 26 C 1.38961 * 120.04749 * 179.97438 * 3 2 1 27 27 O 1.36088 * 120.08785 * 0.02562 * 26 3 2 28 28 C 1.42901 * 117.00091 * 89.99841 * 27 26 3 29 29 H 1.09006 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47180 * 300.00035 * 1 2 3 31 31 H 1.08995 * 109.47115 * 60.00029 * 1 2 3 32 32 H 1.08005 * 119.95174 * 359.95434 * 4 3 2 33 33 H 1.08007 * 119.91065 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46953 * 24.99924 * 7 6 5 35 35 H 1.09000 * 109.47318 * 144.99522 * 7 6 5 36 36 H 1.09001 * 109.46832 * 299.99686 * 8 7 6 37 37 H 1.09004 * 109.47261 * 59.99705 * 8 7 6 38 38 H 1.08998 * 109.47361 * 300.00615 * 14 12 11 39 39 H 1.09000 * 109.46758 * 60.00594 * 14 12 11 40 40 H 1.09005 * 109.46767 * 179.97438 * 14 12 11 41 41 H 0.97009 * 119.99920 * 180.02562 * 18 17 15 42 42 H 1.09009 * 109.47035 * 299.99482 * 25 24 23 43 43 H 1.09000 * 109.47759 * 59.99618 * 25 24 23 44 44 H 1.08999 * 109.47079 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.46991 * 180.02562 * 28 27 26 46 46 H 1.08997 * 109.47338 * 299.99833 * 28 27 26 47 47 H 1.08997 * 109.47336 * 60.00011 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2919 2.3755 -0.0005 5 6 1.9184 3.6074 0.0000 6 6 3.2986 3.6852 0.0005 7 6 3.9765 5.0312 0.0005 8 6 4.3187 5.4299 -1.4364 9 6 4.9960 6.7761 -1.4364 10 8 5.1860 7.3568 -0.3940 11 8 5.3892 7.3296 -2.5943 12 6 6.0344 8.6282 -2.5188 13 1 5.6476 9.1766 -1.6599 14 6 7.5448 8.4389 -2.3648 15 6 5.7512 9.4040 -3.7792 16 1 5.1470 8.9649 -4.5594 17 6 6.2642 10.6740 -3.9370 18 7 7.0003 11.2085 -2.9872 19 14 5.9136 11.6354 -5.4998 20 1 4.6701 12.4281 -5.3248 21 1 7.0483 12.5506 -5.7829 22 1 5.7437 10.6919 -6.6338 23 6 4.0601 2.5267 -0.0044 24 8 5.4179 2.6042 -0.0091 25 6 6.0701 2.6388 1.2619 26 6 3.4340 1.2856 0.0005 27 8 4.1779 0.1461 0.0005 28 6 4.5330 -0.3969 -1.2727 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 0.2133 2.3189 -0.0017 33 1 1.3280 4.5118 -0.0008 34 1 3.3079 5.7747 0.4344 35 1 4.8915 4.9772 0.5904 36 1 4.9874 4.6864 -1.8703 37 1 3.4037 5.4839 -2.0262 38 1 7.7496 7.8778 -1.4531 39 1 7.9317 7.8905 -3.2236 40 1 8.0292 9.4138 -2.3085 41 1 7.3609 12.1022 -3.0981 42 1 5.7290 3.5097 1.8218 43 1 5.8305 1.7326 1.8182 44 1 7.1484 2.7012 1.1154 45 1 5.1232 -1.3021 -1.1298 46 1 3.6279 -0.6381 -1.8301 47 1 5.1183 0.3349 -1.8294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:03 Heat of formation + Delta-G solvation = -198.502273 kcal Electronic energy + Delta-G solvation = -29577.652133 eV Core-core repulsion = 25305.267802 eV Total energy + Delta-G solvation = -4272.384330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90751 -41.23687 -39.89203 -38.78162 -37.84046 -37.44898 -35.32284 -34.47899 -31.77176 -31.16832 -30.33459 -28.45697 -28.13870 -27.45873 -27.27992 -25.83598 -23.50117 -23.25087 -22.13967 -21.14573 -19.57562 -18.86043 -18.54834 -18.44359 -18.12141 -17.38311 -17.19203 -17.07806 -17.02440 -16.38317 -16.23087 -15.94730 -15.68966 -15.57019 -15.15804 -14.94495 -14.65553 -14.25296 -14.21649 -13.77611 -13.68356 -13.55635 -13.15698 -13.11078 -12.97965 -12.85946 -12.82356 -12.64560 -12.54412 -12.37715 -12.17944 -12.14774 -12.06609 -11.79015 -11.57401 -11.38621 -11.31997 -10.97704 -10.67924 -10.59622 -9.70274 -9.14396 -8.28363 -6.45320 -0.05343 0.14839 1.37514 1.42245 1.44406 1.56083 2.00086 2.08829 2.32502 2.45817 2.76463 2.99797 3.02121 3.70517 3.82945 3.90836 4.00356 4.09621 4.23060 4.29085 4.31311 4.38569 4.40761 4.42000 4.45408 4.45981 4.49627 4.53618 4.61869 4.72583 4.75486 4.77149 4.78670 4.81921 4.86113 5.05660 5.09878 5.15966 5.18725 5.41184 5.43992 5.49310 5.63574 5.93267 6.06347 6.11627 6.31561 6.60254 6.66015 6.99560 7.26997 8.79374 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018895 B = 0.002288 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.514058 B =12234.483990 C =12773.399291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.113 3.887 4 C -0.192 4.192 5 C -0.059 4.059 6 C -0.131 4.131 7 C -0.050 4.050 8 C -0.094 4.094 9 C 0.447 3.553 10 O -0.553 6.553 11 O -0.366 6.366 12 C 0.216 3.784 13 H 0.008 0.992 14 C -0.142 4.142 15 C -0.548 4.548 16 H 0.067 0.933 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.984 3.016 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.263 1.263 23 C 0.110 3.890 24 O -0.344 6.344 25 C 0.035 3.965 26 C 0.022 3.978 27 O -0.339 6.339 28 C 0.037 3.963 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.023 0.977 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.271 0.729 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.047 0.953 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 -23.892 6.273 27.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.067 3.933 4 C -0.210 4.210 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.088 4.088 8 C -0.131 4.131 9 C 0.293 3.707 10 O -0.445 6.445 11 O -0.283 6.283 12 C 0.163 3.837 13 H 0.026 0.974 14 C -0.200 4.200 15 C -0.586 4.586 16 H 0.086 0.914 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.807 3.193 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.187 1.187 23 C 0.065 3.935 24 O -0.261 6.261 25 C -0.058 4.058 26 C -0.022 4.022 27 O -0.256 6.256 28 C -0.057 4.057 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.066 0.934 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.443 -23.831 6.601 27.682 hybrid contribution 0.071 0.938 -0.348 1.003 sum -12.371 -22.893 6.253 26.763 Atomic orbital electron populations 1.23437 0.76041 1.05780 1.02702 1.86135 1.23677 1.25858 1.88262 1.19373 0.90830 0.86036 0.97060 1.21496 1.01720 0.90547 1.07266 1.21136 0.92503 0.98803 0.95276 1.19959 0.94375 0.93475 1.05377 1.20107 1.01067 0.92979 0.94619 1.21390 1.02457 0.89118 1.00177 1.24505 0.75589 0.88979 0.81668 1.90569 1.54935 1.64739 1.34265 1.86482 1.69628 1.37349 1.34830 1.20329 0.89690 0.76362 0.97331 0.97398 1.21980 0.97748 1.02280 0.97967 1.21306 1.34148 1.00427 1.02697 0.91441 1.25856 0.94029 0.97755 1.00840 1.70022 1.34129 1.16629 1.34743 0.85167 0.78086 0.77962 0.78100 1.19613 1.20057 1.18701 1.18731 0.83736 0.90737 1.00254 1.85960 1.15136 1.94006 1.30991 1.23137 0.98321 1.00970 0.83378 1.18458 0.87636 0.86196 1.09951 1.86008 1.70560 1.38260 1.30745 1.23102 0.99906 0.99021 0.83705 0.86394 0.91239 0.91190 0.81490 0.82211 0.89618 0.91375 0.87118 0.85774 0.95814 0.93686 0.90057 0.91990 0.93263 0.92848 0.87312 0.87090 0.93403 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.13 10.28 -79.62 -0.82 -6.95 16 3 C 0.11 2.35 6.70 22.55 0.15 2.50 16 4 C -0.19 -3.04 9.04 22.37 0.20 -2.84 16 5 C -0.06 -1.04 9.67 22.26 0.22 -0.82 16 6 C -0.13 -2.99 5.15 -19.76 -0.10 -3.09 16 7 C -0.05 -1.32 4.35 29.85 0.13 -1.19 16 8 C -0.09 -2.77 5.79 29.85 0.17 -2.60 16 9 C 0.45 18.92 7.93 71.23 0.56 19.48 16 10 O -0.55 -26.56 15.20 21.96 0.33 -26.23 16 11 O -0.37 -18.03 9.86 -51.41 -0.51 -18.54 16 12 C 0.22 12.13 2.56 29.85 0.08 12.20 16 13 H 0.01 0.51 7.16 -2.39 -0.02 0.50 16 14 C -0.14 -7.50 9.33 71.98 0.67 -6.83 16 15 C -0.55 -31.54 8.90 25.60 0.23 -31.31 16 16 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 17 C 0.01 0.82 5.30 84.65 0.45 1.27 16 18 N -0.92 -53.15 11.32 21.45 0.24 -52.91 16 19 Si 0.98 43.06 29.54 68.60 2.03 45.08 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 23 C 0.11 2.77 5.71 22.55 0.13 2.90 16 24 O -0.34 -9.15 9.47 -79.58 -0.75 -9.90 16 25 C 0.04 0.76 10.80 113.37 1.22 1.99 16 26 C 0.02 0.56 5.75 22.63 0.13 0.69 16 27 O -0.34 -8.61 9.99 -70.40 -0.70 -9.31 16 28 C 0.04 0.71 11.13 113.37 1.26 1.97 16 29 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 31 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 32 H 0.17 1.51 6.29 -2.91 -0.02 1.49 16 33 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.09 2.18 8.01 -2.39 -0.02 2.16 16 35 H 0.07 1.97 6.38 -2.39 -0.02 1.96 16 36 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.12 3.05 8.14 -2.38 -0.02 3.03 16 38 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.08 4.58 6.07 -2.38 -0.01 4.57 16 41 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 42 H 0.05 1.04 7.17 -2.38 -0.02 1.02 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -74.08 396.87 7.41 -66.67 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.97 Total: 16.53 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 6.62 Total: -4.45 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.24 Total: -52.91 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -2.45 Total: -70.92 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -74.08 7.41 -66.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.832 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds