Wall clock time and date at job start Tue Mar 31 2020 20:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 116.99985 * 2 1 4 4 C 1.38660 * 120.04650 * 0.02562 * 3 2 1 5 5 C 1.38230 * 120.09127 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.91171 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47134 * 90.00214 * 6 5 4 8 8 C 1.50704 * 109.46817 * 180.02562 * 7 6 5 9 9 O 1.20825 * 120.00077 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99598 * 179.97438 * 8 7 6 11 11 C 1.45206 * 117.00211 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46590 * 30.00194 * 11 10 8 13 13 C 1.52997 * 109.47226 * 270.00418 * 11 10 8 14 14 C 1.50697 * 109.47178 * 149.99899 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48493 * 109.47394 * 239.99732 * 18 16 14 22 22 C 1.38233 * 120.17665 * 0.24843 * 5 4 3 23 23 C 1.38662 * 120.08889 * 359.45427 * 22 5 4 24 24 O 1.35995 * 120.04877 * 180.29520 * 23 22 5 25 25 C 1.42912 * 116.99631 * 0.27217 * 24 23 22 26 26 C 1.38978 * 119.90717 * 0.56834 * 23 22 5 27 27 O 1.36099 * 120.08735 * 179.68311 * 26 23 22 28 28 C 1.42894 * 117.00330 * 270.02066 * 27 26 23 29 29 H 1.09007 * 109.47270 * 299.99462 * 1 2 3 30 30 H 1.08998 * 109.47741 * 59.99254 * 1 2 3 31 31 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.95460 * 0.02562 * 4 3 2 33 33 H 1.08995 * 109.46964 * 329.99489 * 6 5 4 34 34 H 1.09004 * 109.46805 * 209.99704 * 6 5 4 35 35 H 1.08995 * 109.47788 * 59.99779 * 7 6 5 36 36 H 1.09004 * 109.46858 * 299.99457 * 7 6 5 37 37 H 1.09002 * 109.47153 * 299.99431 * 13 11 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47261 * 59.99603 * 13 11 10 40 40 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.95355 * 179.72680 * 22 5 4 42 42 H 1.08996 * 109.47036 * 300.00201 * 25 24 23 43 43 H 1.09001 * 109.46965 * 60.00137 * 25 24 23 44 44 H 1.08998 * 109.46778 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.47319 * 179.97438 * 28 27 26 46 46 H 1.09004 * 109.47130 * 300.00566 * 28 27 26 47 47 H 1.09005 * 109.47039 * 59.99978 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3752 0.0005 5 6 1.9187 3.6074 0.0000 6 6 1.0950 4.8693 0.0000 7 6 0.8168 5.2968 1.4425 8 6 -0.0075 6.5584 1.4424 9 8 -0.3380 7.0641 0.3960 10 8 -0.3743 7.1204 2.6048 11 6 -1.1670 8.3347 2.5289 12 1 -1.7701 8.3186 1.6211 13 6 -0.2375 9.5496 2.5022 14 6 -2.0713 8.4202 3.7314 15 1 -2.0519 7.6403 4.4782 16 6 -2.9233 9.4943 3.8780 17 7 -2.9465 10.4443 2.9689 18 14 -4.0438 9.6008 5.3689 19 1 -3.8261 8.4161 6.2375 20 1 -3.7358 10.8368 6.1323 21 1 -5.4597 9.6345 4.9227 22 6 3.2988 3.6850 -0.0063 23 6 4.0604 2.5263 -0.0006 24 8 5.4181 2.6037 -0.0007 25 6 5.9933 3.9120 -0.0007 26 6 3.4342 1.2856 -0.0006 27 8 4.1781 0.1459 -0.0015 28 6 4.5321 -0.3968 -1.2751 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3187 0.0014 33 1 0.1510 4.6870 -0.5135 34 1 1.6415 5.6599 -0.5142 35 1 1.7608 5.4791 1.9560 36 1 0.2702 4.5062 1.9567 37 1 0.3657 9.5657 3.4100 38 1 -0.8325 10.4611 2.4448 39 1 0.4166 9.4877 1.6324 40 1 -3.5462 11.1997 3.0719 41 1 3.7846 4.6496 -0.0111 42 1 5.6691 4.4513 -0.8907 43 1 5.6692 4.4514 0.8893 44 1 7.0802 3.8309 -0.0013 45 1 5.1232 -1.3015 -1.1331 46 1 3.6265 -0.6376 -1.8319 47 1 5.1171 0.3353 -1.8320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:07 Heat of formation + Delta-G solvation = -181.811709 kcal Electronic energy + Delta-G solvation = -29134.773118 eV Core-core repulsion = 24863.112545 eV Total energy + Delta-G solvation = -4271.660573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05950 -39.58593 -39.24257 -37.95510 -37.22149 -35.78849 -33.35973 -33.18484 -30.15082 -29.89322 -29.37605 -28.09894 -27.34461 -26.83986 -25.35336 -24.54353 -22.24140 -21.99131 -21.08203 -19.50510 -18.64391 -17.51490 -17.47825 -16.92231 -16.79493 -16.57832 -16.45139 -15.76843 -15.51652 -15.38672 -15.21525 -14.96955 -14.75273 -14.51086 -14.28473 -13.80782 -13.19156 -13.09959 -12.97615 -12.59760 -12.41562 -12.34706 -12.04425 -11.94874 -11.84955 -11.78265 -11.71689 -11.26357 -11.16793 -11.06271 -11.00649 -10.84520 -10.70076 -10.38199 -10.30610 -10.13668 -9.66729 -9.55275 -8.92264 -8.52110 -8.41490 -8.39414 -6.20941 -4.27797 0.91175 1.13057 2.56577 2.97302 3.16491 3.21749 3.28659 3.33549 3.37692 3.60843 3.77953 4.30255 4.52979 4.65221 4.78271 4.86987 4.89519 4.90318 4.91667 4.92961 5.02172 5.12151 5.17841 5.19339 5.20887 5.22847 5.24651 5.26685 5.48787 5.49795 5.77737 5.80008 5.88088 5.93455 6.03588 6.19129 6.36353 6.61456 6.79783 6.85600 6.88866 6.99731 7.15161 7.49291 7.57964 7.70288 7.91637 8.11914 8.61237 8.86537 9.37894 10.86527 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002203 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.390293 B =12707.269998 C =13697.194525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.151 3.849 4 C -0.228 4.228 5 C 0.000 4.000 6 C -0.072 4.072 7 C -0.110 4.110 8 C 0.451 3.549 9 O -0.524 6.524 10 O -0.357 6.357 11 C 0.214 3.786 12 H 0.046 0.954 13 C -0.154 4.154 14 C -0.520 4.520 15 H 0.069 0.931 16 C 0.061 3.939 17 N -0.889 5.889 18 Si 0.911 3.089 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.229 4.229 23 C 0.151 3.849 24 O -0.305 6.305 25 C 0.024 3.976 26 C 0.020 3.980 27 O -0.313 6.313 28 C 0.035 3.965 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.036 0.964 38 H 0.099 0.901 39 H 0.015 0.985 40 H 0.266 0.734 41 H 0.137 0.863 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.017 -18.748 -8.760 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.105 3.895 4 C -0.247 4.247 5 C 0.000 4.000 6 C -0.109 4.109 7 C -0.148 4.148 8 C 0.294 3.706 9 O -0.414 6.414 10 O -0.273 6.273 11 C 0.162 3.838 12 H 0.064 0.936 13 C -0.212 4.212 14 C -0.558 4.558 15 H 0.087 0.913 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.248 4.248 23 C 0.105 3.895 24 O -0.217 6.217 25 C -0.071 4.071 26 C -0.025 4.025 27 O -0.229 6.229 28 C -0.059 4.059 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.155 0.845 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.095 -18.831 -8.922 25.157 hybrid contribution -0.958 0.786 0.420 1.308 sum 13.137 -18.046 -8.502 23.885 Atomic orbital electron populations 1.23158 0.77922 1.04168 1.01898 1.86134 1.21571 1.25895 1.88112 1.18934 0.90549 0.84981 0.95056 1.21019 1.00462 0.90959 1.12285 1.19479 0.92824 0.94419 0.93297 1.20453 1.00405 0.93892 0.96131 1.21278 1.00896 0.94590 0.98013 1.23312 0.78461 0.85630 0.83180 1.90599 1.53536 1.63815 1.33480 1.86488 1.65115 1.43202 1.32500 1.20641 0.87860 0.76151 0.99174 0.93575 1.22158 0.98911 1.02570 0.97575 1.21071 1.20302 1.07750 1.06701 0.91264 1.24899 0.96986 0.95044 0.97134 1.69905 1.37988 1.10599 1.34228 0.86221 0.79905 0.78223 0.81805 1.19464 1.20700 1.20746 1.21010 0.93988 0.97387 1.12372 1.18930 0.82954 0.92564 0.95093 1.86138 1.16607 1.30842 1.88130 1.23155 0.99214 0.82894 1.01862 1.16930 0.86388 0.84712 1.14515 1.86166 1.70081 1.37971 1.28680 1.22962 0.99437 0.98407 0.85117 0.92087 0.92370 0.88028 0.84476 0.89519 0.89577 0.88121 0.88038 0.94439 0.88250 0.96556 0.92446 0.84516 0.92385 0.92120 0.88037 0.89168 0.93845 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.43 10.28 -34.31 -0.35 -3.78 16 3 C 0.15 1.82 6.70 -39.15 -0.26 1.56 16 4 C -0.23 -2.51 8.69 -39.43 -0.34 -2.86 16 5 C 0.00 0.00 5.13 -104.63 -0.54 -0.54 16 6 C -0.07 -0.87 4.63 -27.88 -0.13 -1.00 16 7 C -0.11 -1.52 5.79 -27.88 -0.16 -1.68 16 8 C 0.45 8.98 7.93 36.01 0.29 9.27 16 9 O -0.52 -11.80 15.20 -18.75 -0.29 -12.08 16 10 O -0.36 -8.36 9.86 -39.25 -0.39 -8.75 16 11 C 0.21 5.72 2.56 -27.89 -0.07 5.65 16 12 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 13 C -0.15 -3.89 9.33 37.16 0.35 -3.55 16 14 C -0.52 -14.55 8.90 -34.44 -0.31 -14.86 16 15 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 18 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.23 -2.49 8.68 -39.43 -0.34 -2.84 16 23 C 0.15 1.81 6.70 -39.15 -0.26 1.55 16 24 O -0.30 -3.39 10.28 -34.31 -0.35 -3.75 16 25 C 0.02 0.17 9.81 101.05 0.99 1.16 16 26 C 0.02 0.26 5.75 -39.03 -0.22 0.03 16 27 O -0.31 -4.13 9.98 -45.31 -0.45 -4.58 16 28 C 0.04 0.34 11.13 101.05 1.13 1.46 16 29 H 0.06 0.42 7.66 -51.92 -0.40 0.02 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.14 1.28 6.29 -52.49 -0.33 0.95 16 33 H 0.09 1.07 8.04 -51.93 -0.42 0.66 16 34 H 0.09 1.06 8.04 -51.93 -0.42 0.64 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 2.68 6.07 -51.93 -0.32 2.36 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.14 1.25 6.29 -52.49 -0.33 0.92 16 42 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 43 H 0.06 0.40 7.67 -51.93 -0.40 0.01 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 396.57 15.07 5.98 5.98 Total: -1.00 -33.62 396.57 -6.36 -39.98 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.12 Total: -0.56 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 1.01 Total: -3.87 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.53 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.83 Total: -32.94 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.62 -6.36 -39.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.829 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds