Wall clock time and date at job start Tue Mar 31 2020 20:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35993 * 116.99985 * 2 1 4 4 C 1.38660 * 120.04650 * 0.02562 * 3 2 1 5 5 C 1.38230 * 120.09127 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.91171 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47134 * 90.00214 * 6 5 4 8 8 C 1.50704 * 109.46817 * 180.02562 * 7 6 5 9 9 O 1.20825 * 120.00077 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99598 * 179.97438 * 8 7 6 11 11 C 1.45206 * 117.00211 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.46590 * 30.00194 * 11 10 8 13 13 C 1.52997 * 109.47226 * 270.00418 * 11 10 8 14 14 C 1.50697 * 109.47178 * 149.99899 * 11 10 8 15 15 H 1.07999 * 120.00055 * 0.02562 * 14 11 10 16 16 C 1.37878 * 119.99687 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00458 * 359.97438 * 16 14 11 18 18 Si 1.86805 * 119.99926 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47262 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46882 * 119.99668 * 18 16 14 21 21 H 1.48493 * 109.47394 * 239.99732 * 18 16 14 22 22 C 1.38233 * 120.17665 * 0.24843 * 5 4 3 23 23 C 1.38662 * 120.08889 * 359.45427 * 22 5 4 24 24 O 1.35995 * 120.04877 * 180.29520 * 23 22 5 25 25 C 1.42912 * 116.99631 * 0.27217 * 24 23 22 26 26 C 1.38978 * 119.90717 * 0.56834 * 23 22 5 27 27 O 1.36099 * 120.08735 * 179.68311 * 26 23 22 28 28 C 1.42894 * 117.00330 * 270.02066 * 27 26 23 29 29 H 1.09007 * 109.47270 * 299.99462 * 1 2 3 30 30 H 1.08998 * 109.47741 * 59.99254 * 1 2 3 31 31 H 1.09001 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.08002 * 119.95460 * 0.02562 * 4 3 2 33 33 H 1.08995 * 109.46964 * 329.99489 * 6 5 4 34 34 H 1.09004 * 109.46805 * 209.99704 * 6 5 4 35 35 H 1.08995 * 109.47788 * 59.99779 * 7 6 5 36 36 H 1.09004 * 109.46858 * 299.99457 * 7 6 5 37 37 H 1.09002 * 109.47153 * 299.99431 * 13 11 10 38 38 H 1.09001 * 109.46832 * 179.97438 * 13 11 10 39 39 H 1.09004 * 109.47261 * 59.99603 * 13 11 10 40 40 H 0.96999 * 120.00480 * 179.97438 * 17 16 14 41 41 H 1.08002 * 119.95355 * 179.72680 * 22 5 4 42 42 H 1.08996 * 109.47036 * 300.00201 * 25 24 23 43 43 H 1.09001 * 109.46965 * 60.00137 * 25 24 23 44 44 H 1.08998 * 109.46778 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.47319 * 179.97438 * 28 27 26 46 46 H 1.09004 * 109.47130 * 300.00566 * 28 27 26 47 47 H 1.09005 * 109.47039 * 59.99978 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2921 2.3752 0.0005 5 6 1.9187 3.6074 0.0000 6 6 1.0950 4.8693 0.0000 7 6 0.8168 5.2968 1.4425 8 6 -0.0075 6.5584 1.4424 9 8 -0.3380 7.0641 0.3960 10 8 -0.3743 7.1204 2.6048 11 6 -1.1670 8.3347 2.5289 12 1 -1.7701 8.3186 1.6211 13 6 -0.2375 9.5496 2.5022 14 6 -2.0713 8.4202 3.7314 15 1 -2.0519 7.6403 4.4782 16 6 -2.9233 9.4943 3.8780 17 7 -2.9465 10.4443 2.9689 18 14 -4.0438 9.6008 5.3689 19 1 -3.8261 8.4161 6.2375 20 1 -3.7358 10.8368 6.1323 21 1 -5.4597 9.6345 4.9227 22 6 3.2988 3.6850 -0.0063 23 6 4.0604 2.5263 -0.0006 24 8 5.4181 2.6037 -0.0007 25 6 5.9933 3.9120 -0.0007 26 6 3.4342 1.2856 -0.0006 27 8 4.1781 0.1459 -0.0015 28 6 4.5321 -0.3968 -1.2751 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3187 0.0014 33 1 0.1510 4.6870 -0.5135 34 1 1.6415 5.6599 -0.5142 35 1 1.7608 5.4791 1.9560 36 1 0.2702 4.5062 1.9567 37 1 0.3657 9.5657 3.4100 38 1 -0.8325 10.4611 2.4448 39 1 0.4166 9.4877 1.6324 40 1 -3.5462 11.1997 3.0719 41 1 3.7846 4.6496 -0.0111 42 1 5.6691 4.4513 -0.8907 43 1 5.6692 4.4514 0.8893 44 1 7.0802 3.8309 -0.0013 45 1 5.1232 -1.3015 -1.1331 46 1 3.6265 -0.6376 -1.8319 47 1 5.1171 0.3353 -1.8320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709803.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:06 Heat of formation + Delta-G solvation = -200.998201 kcal Electronic energy + Delta-G solvation = -29135.605107 eV Core-core repulsion = 24863.112545 eV Total energy + Delta-G solvation = -4272.492562 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89553 -41.25639 -39.99933 -38.81807 -38.19699 -37.47182 -35.32476 -34.32226 -31.79743 -30.69272 -30.69105 -28.72854 -28.02646 -27.73136 -27.44011 -25.61907 -23.48918 -23.01898 -22.31755 -21.16260 -19.49549 -18.83980 -18.52070 -18.30771 -18.12496 -17.57599 -17.28973 -17.15995 -17.02688 -16.45204 -16.27266 -15.98941 -15.72771 -15.50002 -15.22525 -15.02323 -14.77759 -14.30017 -14.05679 -13.76664 -13.65503 -13.46061 -13.20968 -13.07293 -13.03756 -12.94662 -12.80732 -12.67579 -12.47772 -12.41415 -12.38928 -12.14750 -12.04521 -11.92595 -11.58056 -11.51597 -11.28399 -10.97606 -10.97009 -10.60173 -9.26100 -9.22629 -8.29059 -6.45624 0.03784 0.29571 1.37270 1.42181 1.42875 1.56579 1.85092 2.03853 2.35874 2.44973 2.68362 2.89447 3.01677 3.56096 3.85121 3.86201 3.97280 4.13673 4.16174 4.18827 4.34177 4.39132 4.39552 4.40859 4.41636 4.48496 4.48660 4.51888 4.60696 4.73507 4.74815 4.78291 4.78803 4.80348 4.85404 4.94703 5.08601 5.11328 5.19269 5.37403 5.48420 5.49685 5.64326 5.93868 6.02875 6.11807 6.25765 6.60357 6.66781 6.99316 7.26830 8.78716 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.002203 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.390293 B =12707.269998 C =13697.194525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.143 3.857 4 C -0.227 4.227 5 C -0.002 4.002 6 C -0.062 4.062 7 C -0.097 4.097 8 C 0.446 3.554 9 O -0.553 6.553 10 O -0.366 6.366 11 C 0.216 3.784 12 H 0.008 0.992 13 C -0.142 4.142 14 C -0.547 4.547 15 H 0.067 0.933 16 C 0.015 3.985 17 N -0.917 5.917 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.276 1.276 22 C -0.226 4.226 23 C 0.143 3.857 24 O -0.321 6.321 25 C 0.015 3.985 26 C -0.001 4.001 27 O -0.336 6.336 28 C 0.033 3.967 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.271 0.729 41 H 0.154 0.846 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.109 0.891 46 H 0.044 0.956 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.310 -19.462 -8.038 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.096 3.904 4 C -0.246 4.246 5 C -0.002 4.002 6 C -0.099 4.099 7 C -0.134 4.134 8 C 0.291 3.709 9 O -0.445 6.445 10 O -0.282 6.282 11 C 0.163 3.837 12 H 0.026 0.974 13 C -0.200 4.200 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.197 1.197 21 H -0.201 1.201 22 C -0.245 4.245 23 C 0.097 3.903 24 O -0.234 6.234 25 C -0.079 4.079 26 C -0.046 4.046 27 O -0.253 6.253 28 C -0.061 4.061 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.140 0.860 32 H 0.170 0.830 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.172 0.828 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.128 0.872 46 H 0.063 0.937 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.406 -19.561 -8.215 25.644 hybrid contribution -0.994 0.943 0.101 1.374 sum 13.412 -18.618 -8.114 24.338 Atomic orbital electron populations 1.23427 0.76101 1.05803 1.02554 1.86114 1.23507 1.25769 1.88052 1.19031 0.90526 0.85563 0.95256 1.21170 1.01215 0.90555 1.11648 1.19361 0.92850 0.93914 0.94081 1.20341 1.00435 0.94271 0.94894 1.21405 1.00795 0.91477 0.99746 1.24515 0.77973 0.86683 0.81719 1.90586 1.54727 1.64991 1.34201 1.86481 1.65020 1.42264 1.34470 1.20331 0.88220 0.78024 0.97169 0.97396 1.21979 0.98492 1.01147 0.98372 1.21336 1.21573 1.08328 1.07209 0.91483 1.25833 0.98177 0.94359 1.00101 1.70019 1.38549 1.11034 1.35896 0.85141 0.77690 0.78600 0.78013 1.18726 1.19737 1.20122 1.21170 0.93845 0.97859 1.11595 1.19022 0.83526 0.92555 0.95222 1.86120 1.16222 1.33062 1.88045 1.23435 1.00281 0.81599 1.02588 1.17287 0.87027 0.85101 1.15209 1.86104 1.70326 1.38331 1.30491 1.23109 0.99795 0.99087 0.84097 0.91631 0.91433 0.86041 0.83005 0.89887 0.89662 0.85788 0.86088 0.93574 0.90199 0.95580 0.92011 0.82833 0.91400 0.91562 0.86055 0.87222 0.93699 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -6.97 10.28 -79.53 -0.82 -7.79 16 3 C 0.14 3.33 6.70 22.55 0.15 3.48 16 4 C -0.23 -4.66 8.69 22.37 0.19 -4.47 16 5 C 0.00 -0.04 5.13 -19.87 -0.10 -0.14 16 6 C -0.06 -1.40 4.63 29.85 0.14 -1.26 16 7 C -0.10 -2.47 5.79 29.85 0.17 -2.30 16 8 C 0.45 17.52 7.93 71.24 0.56 18.09 16 9 O -0.55 -25.12 15.20 21.97 0.33 -24.79 16 10 O -0.37 -17.13 9.86 -51.37 -0.51 -17.64 16 11 C 0.22 11.73 2.56 29.85 0.08 11.81 16 12 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 13 C -0.14 -7.24 9.33 71.98 0.67 -6.56 16 14 C -0.55 -30.82 8.90 25.60 0.23 -30.59 16 15 H 0.07 3.71 7.81 -2.91 -0.02 3.68 16 16 C 0.01 0.82 5.30 84.66 0.45 1.26 16 17 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 18 Si 0.98 42.51 29.54 68.60 2.03 44.53 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 22 C -0.23 -4.55 8.68 22.37 0.19 -4.35 16 23 C 0.14 3.30 6.70 22.55 0.15 3.46 16 24 O -0.32 -6.85 10.28 -79.55 -0.82 -7.67 16 25 C 0.02 0.19 9.81 113.37 1.11 1.30 16 26 C 0.00 -0.03 5.75 22.62 0.13 0.10 16 27 O -0.34 -8.80 9.98 -70.53 -0.70 -9.50 16 28 C 0.03 0.62 11.13 113.37 1.26 1.88 16 29 H 0.07 0.80 7.66 -2.38 -0.02 0.78 16 30 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.15 2.55 6.29 -2.91 -0.02 2.53 16 33 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 34 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 35 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 4.38 6.07 -2.39 -0.01 4.36 16 39 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.15 2.46 6.29 -2.91 -0.02 2.44 16 42 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 43 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 44 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.04 0.79 8.14 -2.38 -0.02 0.78 16 Total: -1.00 -73.29 396.57 7.24 -66.05 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.97 Total: 15.84 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 6.51 Total: -6.99 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.24 Total: -52.05 kcal Atomic # 8 Polarization: -64.87 SS G_CDS: -2.51 Total: -67.38 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -73.29 7.24 -66.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709803.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.948 kcal (2) G-P(sol) polarization free energy of solvation -73.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds