Wall clock time and date at job start Tue Mar 31 2020 20:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35990 * 117.00223 * 2 1 4 4 C 1.38671 * 120.04658 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.09187 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.91379 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47581 * 89.99579 * 6 5 4 8 8 C 1.50696 * 109.47581 * 180.02562 * 7 6 5 9 9 O 1.20833 * 119.99595 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00302 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00077 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47078 * 330.00341 * 11 10 8 13 13 C 1.53000 * 109.47102 * 90.00098 * 11 10 8 14 14 C 1.50704 * 109.47006 * 210.00139 * 11 10 8 15 15 H 1.07998 * 119.99806 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99865 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99912 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99968 * 359.97438 * 16 14 11 19 19 H 1.48509 * 109.47158 * 90.00384 * 18 16 14 20 20 H 1.48503 * 109.47252 * 210.00186 * 18 16 14 21 21 H 1.48505 * 109.47321 * 330.00533 * 18 16 14 22 22 C 1.38231 * 120.17637 * 0.25714 * 5 4 3 23 23 C 1.38663 * 120.09171 * 359.44969 * 22 5 4 24 24 O 1.35999 * 120.04835 * 180.29361 * 23 22 5 25 25 C 1.42906 * 116.99764 * 0.27694 * 24 23 22 26 26 C 1.38980 * 119.90946 * 0.57098 * 23 22 5 27 27 O 1.36088 * 120.09141 * 179.68162 * 26 23 22 28 28 C 1.42902 * 117.00122 * 270.02253 * 27 26 23 29 29 H 1.09001 * 109.47172 * 300.00949 * 1 2 3 30 30 H 1.09002 * 109.47008 * 60.00495 * 1 2 3 31 31 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.95335 * 0.03506 * 4 3 2 33 33 H 1.09005 * 109.47017 * 329.99631 * 6 5 4 34 34 H 1.09000 * 109.47368 * 210.00606 * 6 5 4 35 35 H 1.09009 * 109.46302 * 60.00405 * 7 6 5 36 36 H 1.08995 * 109.47159 * 300.00733 * 7 6 5 37 37 H 1.09000 * 109.47214 * 300.00384 * 13 11 10 38 38 H 1.09008 * 109.47142 * 59.99549 * 13 11 10 39 39 H 1.08992 * 109.47123 * 179.97438 * 13 11 10 40 40 H 0.97002 * 119.99922 * 179.97438 * 17 16 14 41 41 H 1.08010 * 119.95260 * 179.72477 * 22 5 4 42 42 H 1.09001 * 109.47149 * 59.99739 * 25 24 23 43 43 H 1.08998 * 109.47065 * 179.97438 * 25 24 23 44 44 H 1.08994 * 109.46858 * 299.99812 * 25 24 23 45 45 H 1.09003 * 109.47031 * 180.02562 * 28 27 26 46 46 H 1.08998 * 109.46833 * 299.99950 * 28 27 26 47 47 H 1.08995 * 109.47018 * 59.99856 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2922 2.3753 -0.0005 5 6 1.9188 3.6073 -0.0011 6 6 1.0952 4.8693 -0.0022 7 6 0.8157 5.2974 1.4398 8 6 -0.0084 6.5590 1.4387 9 8 -0.3388 7.0638 0.3917 10 8 -0.3755 7.1220 2.6005 11 6 -1.1690 8.3357 2.5233 12 1 -0.9122 8.8805 1.6149 13 6 -2.6550 7.9726 2.4973 14 6 -0.8838 9.1995 3.7248 15 1 -0.1767 8.8696 4.4715 16 6 -1.5258 10.4109 3.8708 17 7 -1.2766 11.1650 4.9191 18 14 -2.7483 10.9818 2.5790 19 1 -4.1071 10.5005 2.9364 20 1 -2.7486 12.4656 2.5192 21 1 -2.3614 10.4330 1.2545 22 6 3.2989 3.6850 -0.0064 23 6 4.0604 2.5262 0.0002 24 8 5.4182 2.6037 0.0010 25 6 5.9934 3.9119 0.0008 26 6 3.4343 1.2854 0.0003 27 8 4.1781 0.1458 0.0003 28 6 4.5331 -0.3972 -1.2730 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2136 2.3188 -0.0004 33 1 0.1515 4.6869 -0.5164 34 1 1.6421 5.6597 -0.5164 35 1 1.7595 5.4799 1.9539 36 1 0.2688 4.5071 1.9539 37 1 -2.8612 7.3477 1.6284 38 1 -2.9119 7.4276 3.4058 39 1 -3.2506 8.8835 2.4399 40 1 -1.7279 12.0175 5.0216 41 1 3.7847 4.6496 -0.0113 42 1 5.6687 4.4516 0.8904 43 1 7.0804 3.8309 0.0019 44 1 5.6698 4.4509 -0.8895 45 1 5.1233 -1.3025 -1.1302 46 1 3.6278 -0.6383 -1.8302 47 1 5.1184 0.3345 -1.8297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:09 Heat of formation + Delta-G solvation = -171.924302 kcal Electronic energy + Delta-G solvation = -29208.604515 eV Core-core repulsion = 24937.372692 eV Total energy + Delta-G solvation = -4271.231823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09457 -39.81143 -39.27158 -37.98602 -37.28826 -36.01840 -33.42174 -33.15858 -30.77310 -29.92689 -29.84139 -28.12799 -27.36998 -26.92289 -25.33025 -24.62434 -22.27566 -22.10415 -21.16452 -19.67964 -18.68294 -17.59043 -17.51568 -17.22516 -16.82906 -16.57133 -16.48576 -15.88258 -15.79549 -15.63271 -15.24451 -15.00972 -14.78163 -14.63482 -14.31867 -13.89990 -13.26904 -13.19458 -13.00348 -12.76697 -12.65149 -12.41441 -12.35012 -12.20565 -11.99013 -11.88143 -11.81064 -11.76379 -11.53670 -11.15464 -11.10040 -10.92783 -10.74637 -10.26545 -10.16260 -10.03223 -9.80801 -9.61706 -9.16116 -8.72207 -8.44901 -8.42988 -6.25785 -4.28337 0.87217 1.09582 2.53669 2.78144 3.11907 3.15490 3.27951 3.29633 3.34851 3.44915 3.71895 4.23270 4.44612 4.61352 4.74412 4.82681 4.85688 4.86992 4.87787 4.90966 4.92981 5.05064 5.13159 5.15203 5.18142 5.19119 5.21501 5.24921 5.37103 5.46530 5.62138 5.70505 5.77360 5.89887 5.96740 6.11798 6.14245 6.24047 6.30957 6.36388 6.56208 6.76866 6.96840 6.99361 7.32912 7.46466 7.48763 8.19027 8.55757 8.81258 9.31144 10.86314 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.002266 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.221974 B =12353.253627 C =13310.031156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.304 6.304 3 C 0.151 3.849 4 C -0.229 4.229 5 C -0.001 4.001 6 C -0.071 4.071 7 C -0.110 4.110 8 C 0.452 3.548 9 O -0.525 6.525 10 O -0.341 6.341 11 C 0.190 3.810 12 H 0.046 0.954 13 C -0.169 4.169 14 C -0.526 4.526 15 H 0.087 0.913 16 C 0.079 3.921 17 N -0.888 5.888 18 Si 0.880 3.120 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.263 1.263 22 C -0.228 4.228 23 C 0.152 3.848 24 O -0.304 6.304 25 C 0.023 3.977 26 C 0.021 3.979 27 O -0.313 6.313 28 C 0.036 3.964 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.036 0.964 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.269 0.731 41 H 0.138 0.862 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.043 0.957 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.324 -21.908 -13.340 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.217 6.217 3 C 0.105 3.895 4 C -0.248 4.248 5 C -0.001 4.001 6 C -0.109 4.109 7 C -0.147 4.147 8 C 0.295 3.705 9 O -0.415 6.415 10 O -0.257 6.257 11 C 0.136 3.864 12 H 0.064 0.936 13 C -0.227 4.227 14 C -0.563 4.563 15 H 0.105 0.895 16 C -0.124 4.124 17 N -0.525 5.525 18 Si 0.709 3.291 19 H -0.200 1.200 20 H -0.217 1.217 21 H -0.187 1.187 22 C -0.247 4.247 23 C 0.105 3.895 24 O -0.217 6.217 25 C -0.072 4.072 26 C -0.025 4.025 27 O -0.229 6.229 28 C -0.059 4.059 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.156 0.844 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.061 0.939 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.461 -21.991 -13.357 27.414 hybrid contribution -1.140 1.009 -0.826 1.732 sum 8.321 -20.982 -14.183 26.658 Atomic orbital electron populations 1.23153 0.77970 1.04170 1.01822 1.86138 1.21533 1.25898 1.88117 1.18935 0.90558 0.84966 0.95088 1.20998 1.00384 0.90965 1.12415 1.19445 0.92832 0.94336 0.93530 1.20451 1.00402 0.94039 0.95977 1.21286 1.01093 0.94129 0.98231 1.23444 0.78229 0.85814 0.82970 1.90601 1.54099 1.63402 1.33406 1.86517 1.64792 1.41929 1.32442 1.20926 0.85981 0.79680 0.99769 0.93640 1.22519 0.98614 1.00850 1.00691 1.20789 1.27125 1.01975 1.06444 0.89495 1.24742 0.96433 0.95757 0.95497 1.69838 1.42529 1.12268 1.27826 0.86962 0.81790 0.77487 0.82862 1.19997 1.21668 1.18739 1.21023 0.93981 0.97452 1.12237 1.18939 0.83009 0.92552 0.94979 1.86141 1.16558 1.30909 1.88076 1.23164 0.99258 0.82836 1.01901 1.16937 0.86393 0.84737 1.14399 1.86168 1.70069 1.37942 1.28704 1.22963 0.99431 0.98420 0.85103 0.92134 0.92409 0.88023 0.84543 0.89592 0.89482 0.87719 0.87891 0.94454 0.91779 0.92544 0.92045 0.84449 0.92050 0.87992 0.92374 0.89142 0.93861 0.93833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.29 10.28 -34.29 -0.35 -3.64 16 3 C 0.15 1.75 6.70 -39.15 -0.26 1.49 16 4 C -0.23 -2.37 8.69 -39.43 -0.34 -2.72 16 5 C 0.00 -0.01 5.13 -104.63 -0.54 -0.55 16 6 C -0.07 -0.81 4.63 -27.89 -0.13 -0.94 16 7 C -0.11 -1.41 5.79 -27.89 -0.16 -1.57 16 8 C 0.45 8.40 7.93 36.00 0.29 8.69 16 9 O -0.52 -10.94 15.20 -18.76 -0.29 -11.23 16 10 O -0.34 -7.58 9.86 -39.24 -0.39 -7.97 16 11 C 0.19 4.74 2.15 -27.88 -0.06 4.68 16 12 H 0.05 1.19 6.21 -51.93 -0.32 0.87 16 13 C -0.17 -3.81 9.03 37.16 0.34 -3.47 16 14 C -0.53 -14.95 9.48 -34.44 -0.33 -15.28 16 15 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 16 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 17 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 18 Si 0.88 21.47 24.37 -169.99 -4.14 17.33 16 19 H -0.27 -6.39 6.87 56.52 0.39 -6.00 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.26 -6.31 6.53 56.52 0.37 -5.94 16 22 C -0.23 -2.41 8.68 -39.43 -0.34 -2.75 16 23 C 0.15 1.78 6.70 -39.15 -0.26 1.52 16 24 O -0.30 -3.35 10.28 -34.32 -0.35 -3.70 16 25 C 0.02 0.17 9.81 101.05 0.99 1.16 16 26 C 0.02 0.26 5.75 -39.03 -0.22 0.04 16 27 O -0.31 -4.05 9.98 -45.28 -0.45 -4.50 16 28 C 0.04 0.33 11.13 101.05 1.13 1.45 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 1.16 6.29 -52.48 -0.33 0.83 16 33 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 34 H 0.09 1.00 8.04 -51.93 -0.42 0.59 16 35 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 39 H 0.06 1.29 3.27 -51.93 -0.17 1.12 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.14 1.22 6.29 -52.48 -0.33 0.89 16 42 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 43 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -34.49 389.75 -5.33 -39.82 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.99 Total: -1.29 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 0.98 Total: -4.94 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.77 Total: -25.75 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.83 Total: -31.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.49 -5.33 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.102 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds