Wall clock time and date at job start Tue Mar 31 2020 20:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35990 * 117.00223 * 2 1 4 4 C 1.38671 * 120.04658 * 359.97438 * 3 2 1 5 5 C 1.38224 * 120.09187 * 180.02562 * 4 3 2 6 6 C 1.50696 * 119.91379 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47581 * 89.99579 * 6 5 4 8 8 C 1.50696 * 109.47581 * 180.02562 * 7 6 5 9 9 O 1.20833 * 119.99595 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00302 * 180.02562 * 8 7 6 11 11 C 1.45206 * 117.00077 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47078 * 330.00341 * 11 10 8 13 13 C 1.53000 * 109.47102 * 90.00098 * 11 10 8 14 14 C 1.50704 * 109.47006 * 210.00139 * 11 10 8 15 15 H 1.07998 * 119.99806 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99865 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99912 * 180.02562 * 16 14 11 18 18 Si 1.86798 * 119.99968 * 359.97438 * 16 14 11 19 19 H 1.48509 * 109.47158 * 90.00384 * 18 16 14 20 20 H 1.48503 * 109.47252 * 210.00186 * 18 16 14 21 21 H 1.48505 * 109.47321 * 330.00533 * 18 16 14 22 22 C 1.38231 * 120.17637 * 0.25714 * 5 4 3 23 23 C 1.38663 * 120.09171 * 359.44969 * 22 5 4 24 24 O 1.35999 * 120.04835 * 180.29361 * 23 22 5 25 25 C 1.42906 * 116.99764 * 0.27694 * 24 23 22 26 26 C 1.38980 * 119.90946 * 0.57098 * 23 22 5 27 27 O 1.36088 * 120.09141 * 179.68162 * 26 23 22 28 28 C 1.42902 * 117.00122 * 270.02253 * 27 26 23 29 29 H 1.09001 * 109.47172 * 300.00949 * 1 2 3 30 30 H 1.09002 * 109.47008 * 60.00495 * 1 2 3 31 31 H 1.09000 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.95335 * 0.03506 * 4 3 2 33 33 H 1.09005 * 109.47017 * 329.99631 * 6 5 4 34 34 H 1.09000 * 109.47368 * 210.00606 * 6 5 4 35 35 H 1.09009 * 109.46302 * 60.00405 * 7 6 5 36 36 H 1.08995 * 109.47159 * 300.00733 * 7 6 5 37 37 H 1.09000 * 109.47214 * 300.00384 * 13 11 10 38 38 H 1.09008 * 109.47142 * 59.99549 * 13 11 10 39 39 H 1.08992 * 109.47123 * 179.97438 * 13 11 10 40 40 H 0.97002 * 119.99922 * 179.97438 * 17 16 14 41 41 H 1.08010 * 119.95260 * 179.72477 * 22 5 4 42 42 H 1.09001 * 109.47149 * 59.99739 * 25 24 23 43 43 H 1.08998 * 109.47065 * 179.97438 * 25 24 23 44 44 H 1.08994 * 109.46858 * 299.99812 * 25 24 23 45 45 H 1.09003 * 109.47031 * 180.02562 * 28 27 26 46 46 H 1.08998 * 109.46833 * 299.99950 * 28 27 26 47 47 H 1.08995 * 109.47018 * 59.99856 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2922 2.3753 -0.0005 5 6 1.9188 3.6073 -0.0011 6 6 1.0952 4.8693 -0.0022 7 6 0.8157 5.2974 1.4398 8 6 -0.0084 6.5590 1.4387 9 8 -0.3388 7.0638 0.3917 10 8 -0.3755 7.1220 2.6005 11 6 -1.1690 8.3357 2.5233 12 1 -0.9122 8.8805 1.6149 13 6 -2.6550 7.9726 2.4973 14 6 -0.8838 9.1995 3.7248 15 1 -0.1767 8.8696 4.4715 16 6 -1.5258 10.4109 3.8708 17 7 -1.2766 11.1650 4.9191 18 14 -2.7483 10.9818 2.5790 19 1 -4.1071 10.5005 2.9364 20 1 -2.7486 12.4656 2.5192 21 1 -2.3614 10.4330 1.2545 22 6 3.2989 3.6850 -0.0064 23 6 4.0604 2.5262 0.0002 24 8 5.4182 2.6037 0.0010 25 6 5.9934 3.9119 0.0008 26 6 3.4343 1.2854 0.0003 27 8 4.1781 0.1458 0.0003 28 6 4.5331 -0.3972 -1.2730 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2136 2.3188 -0.0004 33 1 0.1515 4.6869 -0.5164 34 1 1.6421 5.6597 -0.5164 35 1 1.7595 5.4799 1.9539 36 1 0.2688 4.5071 1.9539 37 1 -2.8612 7.3477 1.6284 38 1 -2.9119 7.4276 3.4058 39 1 -3.2506 8.8835 2.4399 40 1 -1.7279 12.0175 5.0216 41 1 3.7847 4.6496 -0.0113 42 1 5.6687 4.4516 0.8904 43 1 7.0804 3.8309 0.0019 44 1 5.6698 4.4509 -0.8895 45 1 5.1233 -1.3025 -1.1302 46 1 3.6278 -0.6383 -1.8302 47 1 5.1184 0.3345 -1.8297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733709804.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:08 Heat of formation + Delta-G solvation = -193.439681 kcal Electronic energy + Delta-G solvation = -29209.537492 eV Core-core repulsion = 24937.372692 eV Total energy + Delta-G solvation = -4272.164800 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.165 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89851 -41.36120 -39.99838 -38.82297 -38.24185 -37.54775 -35.28760 -34.33630 -32.66887 -30.78679 -30.68853 -28.72745 -28.02959 -27.75893 -27.33517 -25.65871 -23.54089 -23.01832 -22.31260 -21.23078 -19.50674 -19.14562 -18.51553 -18.31124 -18.14968 -17.60310 -17.53034 -17.23231 -17.09301 -16.45108 -16.31630 -15.98943 -15.72585 -15.50350 -15.30933 -15.07586 -14.84515 -14.58108 -14.27834 -13.99462 -13.81796 -13.61960 -13.48629 -13.26142 -13.10776 -13.01955 -12.84902 -12.67910 -12.47676 -12.41229 -12.22396 -12.04079 -11.92896 -11.74796 -11.64981 -11.51826 -11.30429 -11.19102 -10.97654 -10.83277 -9.25882 -9.22271 -8.44556 -6.53502 0.03944 0.29874 1.23694 1.30812 1.31409 1.40908 1.84535 1.96175 2.19630 2.38640 2.68600 2.88131 2.89388 3.52130 3.82979 3.85856 3.97713 4.09236 4.14299 4.16244 4.25983 4.33820 4.38871 4.39566 4.40937 4.41527 4.42600 4.48140 4.48348 4.52521 4.60312 4.73439 4.74967 4.77380 4.78455 4.81165 4.95050 5.08834 5.11630 5.22051 5.34648 5.38214 5.48373 5.69187 6.03205 6.16049 6.26218 6.50907 6.66984 6.90696 7.12002 8.71408 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018354 B = 0.002266 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.221974 B =12353.253627 C =13310.031156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.143 3.857 4 C -0.225 4.225 5 C -0.002 4.002 6 C -0.062 4.062 7 C -0.099 4.099 8 C 0.449 3.551 9 O -0.547 6.547 10 O -0.356 6.356 11 C 0.192 3.808 12 H 0.032 0.968 13 C -0.164 4.164 14 C -0.540 4.540 15 H 0.046 0.954 16 C 0.028 3.972 17 N -0.931 5.931 18 Si 0.942 3.058 19 H -0.251 1.251 20 H -0.284 1.284 21 H -0.256 1.256 22 C -0.228 4.228 23 C 0.142 3.858 24 O -0.322 6.322 25 C 0.015 3.985 26 C -0.002 4.002 27 O -0.336 6.336 28 C 0.033 3.967 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.275 0.725 41 H 0.152 0.848 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.045 0.955 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 -22.780 -14.881 28.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.096 3.904 4 C -0.244 4.244 5 C -0.003 4.003 6 C -0.099 4.099 7 C -0.137 4.137 8 C 0.295 3.705 9 O -0.438 6.438 10 O -0.273 6.273 11 C 0.138 3.862 12 H 0.050 0.950 13 C -0.221 4.221 14 C -0.578 4.578 15 H 0.064 0.936 16 C -0.172 4.172 17 N -0.569 5.569 18 Si 0.767 3.233 19 H -0.176 1.176 20 H -0.211 1.211 21 H -0.180 1.180 22 C -0.247 4.247 23 C 0.095 3.905 24 O -0.235 6.235 25 C -0.079 4.079 26 C -0.047 4.047 27 O -0.253 6.253 28 C -0.061 4.061 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.170 0.830 42 H 0.083 0.917 43 H 0.139 0.861 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.064 0.936 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.446 -22.888 -14.906 28.590 hybrid contribution -0.690 1.194 -0.328 1.417 sum 7.756 -21.694 -15.233 27.620 Atomic orbital electron populations 1.23437 0.76038 1.05802 1.02633 1.86119 1.23587 1.25774 1.88042 1.19037 0.90463 0.85653 0.95235 1.21180 1.01301 0.90383 1.11516 1.19374 0.92744 0.94086 0.94068 1.20354 1.00653 0.94136 0.94754 1.21423 1.00788 0.91538 0.99905 1.24505 0.77809 0.86711 0.81525 1.90586 1.55041 1.64350 1.33828 1.86513 1.65055 1.41026 1.34665 1.20612 0.88007 0.80561 0.97060 0.95039 1.22406 0.96334 1.01236 1.02104 1.20978 1.26559 1.03269 1.06966 0.93582 1.25596 0.98331 0.95636 0.97599 1.69964 1.44002 1.12981 1.29931 0.85956 0.80061 0.77190 0.80075 1.17645 1.21118 1.18028 1.21186 0.94055 0.97767 1.11650 1.19055 0.83500 0.92649 0.95290 1.86118 1.16334 1.33007 1.88062 1.23422 1.00273 0.81619 1.02547 1.17308 0.87133 0.85038 1.15231 1.86104 1.70369 1.38343 1.30506 1.23104 0.99807 0.99045 0.84108 0.91518 0.91291 0.86149 0.82641 0.89238 0.89749 0.86292 0.85591 0.92134 0.91200 0.92733 0.91562 0.83033 0.91697 0.86109 0.91348 0.87282 0.93626 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.61 10.28 -79.49 -0.82 -7.43 16 3 C 0.14 3.17 6.70 22.55 0.15 3.32 16 4 C -0.23 -4.22 8.69 22.37 0.19 -4.03 16 5 C 0.00 -0.05 5.13 -19.87 -0.10 -0.15 16 6 C -0.06 -1.24 4.63 29.85 0.14 -1.11 16 7 C -0.10 -2.31 5.79 29.85 0.17 -2.14 16 8 C 0.45 15.99 7.93 71.23 0.56 16.56 16 9 O -0.55 -21.95 15.20 21.94 0.33 -21.61 16 10 O -0.36 -15.60 9.86 -51.35 -0.51 -16.11 16 11 C 0.19 9.46 2.15 29.85 0.06 9.52 16 12 H 0.03 1.64 6.21 -2.39 -0.01 1.63 16 13 C -0.16 -7.00 9.03 71.98 0.65 -6.35 16 14 C -0.54 -31.32 9.48 25.60 0.24 -31.07 16 15 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 16 C 0.03 1.61 5.45 84.65 0.46 2.07 16 17 N -0.93 -56.53 13.96 21.45 0.30 -56.23 16 18 Si 0.94 43.53 24.37 68.60 1.67 45.20 16 19 H -0.25 -10.69 6.87 99.48 0.68 -10.01 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.26 -11.49 6.53 99.48 0.65 -10.84 16 22 C -0.23 -4.47 8.68 22.37 0.19 -4.28 16 23 C 0.14 3.23 6.70 22.55 0.15 3.38 16 24 O -0.32 -6.91 10.28 -79.60 -0.82 -7.73 16 25 C 0.02 0.20 9.81 113.37 1.11 1.31 16 26 C 0.00 -0.05 5.75 22.63 0.13 0.08 16 27 O -0.34 -8.71 9.98 -70.40 -0.70 -9.41 16 28 C 0.03 0.61 11.13 113.37 1.26 1.87 16 29 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 30 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.16 2.21 6.29 -2.91 -0.02 2.19 16 33 H 0.09 1.77 8.04 -2.38 -0.02 1.75 16 34 H 0.08 1.77 8.04 -2.39 -0.02 1.75 16 35 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 39 H 0.05 2.34 3.27 -2.39 -0.01 2.33 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.15 2.42 6.29 -2.91 -0.02 2.40 16 42 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 43 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 45 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -75.61 389.75 6.86 -68.75 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.90 Total: 14.30 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 6.50 Total: -9.73 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.30 Total: -56.23 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -2.51 Total: -62.29 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.67 Total: 45.20 kcal Total: -75.61 6.86 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709804.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.688 kcal (2) G-P(sol) polarization free energy of solvation -75.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds