Wall clock time and date at job start Tue Mar 31 2020 21:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47280 * 2 1 4 4 C 1.46502 * 119.99957 * 85.00159 * 3 2 1 5 5 C 1.52997 * 109.47256 * 84.99902 * 4 3 2 6 6 C 1.50700 * 109.47232 * 180.02562 * 5 4 3 7 7 C 1.38220 * 119.61788 * 125.01957 * 6 5 4 8 8 C 1.38626 * 119.16092 * 179.74526 * 7 6 5 9 9 C 1.38674 * 118.41887 * 0.47804 * 8 7 6 10 10 C 1.38177 * 119.16149 * 359.50370 * 9 8 7 11 11 N 1.31851 * 119.61427 * 304.99989 * 6 5 4 12 12 S 1.65603 * 119.99784 * 264.99909 * 3 2 1 13 13 O 1.42099 * 104.27801 * 26.07591 * 12 3 2 14 14 O 1.42100 * 104.27173 * 153.92968 * 12 3 2 15 15 C 1.81400 * 104.44922 * 270.00015 * 12 3 2 16 16 C 1.52993 * 109.46752 * 173.50299 * 15 12 3 17 17 C 1.50699 * 115.55345 * 65.18564 * 16 15 12 18 18 H 1.08002 * 120.00361 * 264.78503 * 17 16 15 19 19 C 1.37882 * 120.00141 * 84.78377 * 17 16 15 20 20 N 1.31517 * 119.99474 * 352.25997 * 19 17 16 21 21 Si 1.86798 * 120.00358 * 172.25787 * 19 17 16 22 22 H 1.48498 * 109.47090 * 89.99922 * 21 19 17 23 23 H 1.48498 * 109.47180 * 210.00017 * 21 19 17 24 24 H 1.48504 * 109.46921 * 329.99834 * 21 19 17 25 25 C 1.53004 * 117.50067 * 279.51270 * 16 15 12 26 26 C 1.53005 * 117.49802 * 210.85546 * 16 15 12 27 27 H 1.09004 * 109.47265 * 300.00356 * 1 2 3 28 28 H 1.09003 * 109.47204 * 59.99475 * 1 2 3 29 29 H 1.08990 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46827 * 239.99718 * 2 1 3 31 31 H 1.09000 * 109.46726 * 120.00379 * 2 1 3 32 32 H 1.09003 * 109.46824 * 325.00167 * 4 3 2 33 33 H 1.08999 * 109.46771 * 205.00293 * 4 3 2 34 34 H 1.09000 * 109.46895 * 59.99601 * 5 4 3 35 35 H 1.09008 * 109.46764 * 299.99896 * 5 4 3 36 36 H 1.08004 * 120.42169 * 359.95500 * 7 6 5 37 37 H 1.08004 * 120.79272 * 180.23600 * 8 7 6 38 38 H 1.07998 * 120.41944 * 179.77932 * 9 8 7 39 39 H 1.08007 * 119.61900 * 180.25700 * 10 9 8 40 40 H 1.09003 * 109.46916 * 293.50234 * 15 12 3 41 41 H 1.08997 * 109.47111 * 53.50446 * 15 12 3 42 42 H 0.97003 * 119.99289 * 185.03435 * 20 19 17 43 43 H 1.09003 * 117.49517 * 0.02562 * 25 16 15 44 44 H 1.08993 * 117.50025 * 145.01984 * 25 16 15 45 45 H 1.08994 * 117.50059 * 214.98149 * 26 16 15 46 46 H 1.09005 * 117.49362 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1087 1.2639 5 6 3.5152 1.7839 1.8918 6 6 3.6589 2.5317 3.1922 7 6 3.9457 1.8365 4.3519 8 6 4.0811 2.5344 5.5420 9 6 3.9124 3.9107 5.5227 10 6 3.6272 4.5374 4.3247 11 7 3.5100 3.8416 3.2104 12 16 2.4123 2.1201 -1.4287 13 8 1.6208 1.4496 -2.3999 14 8 2.2335 3.5055 -1.1676 15 6 4.1698 1.7388 -1.6661 16 6 4.6176 2.2339 -3.0427 17 6 4.5836 3.7277 -3.2389 18 1 3.7226 4.1930 -3.6957 19 6 5.6516 4.5006 -2.8351 20 7 6.6308 3.9592 -2.1438 21 14 5.7080 6.3164 -3.2699 22 1 5.0517 7.1033 -2.1951 23 1 7.1219 6.7489 -3.4071 24 1 4.9950 6.5404 -4.5532 25 6 4.2884 1.3551 -4.2511 26 6 5.7301 1.4542 -3.7464 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8097 1.9453 33 1 2.0922 3.1802 1.0756 34 1 4.3117 2.0828 1.2103 35 1 3.5812 0.7122 2.0801 36 1 4.0662 0.7634 4.3306 37 1 4.3087 2.0182 6.4629 38 1 4.0071 4.4860 6.4318 39 1 3.4984 5.6095 4.3005 40 1 4.7568 2.2345 -0.8929 41 1 4.3197 0.6611 -1.6012 42 1 7.3453 4.5162 -1.7971 43 1 3.7524 0.4243 -4.0654 44 1 4.0476 1.8573 -5.1880 45 1 6.4372 2.0215 -4.3515 46 1 6.1432 0.5886 -3.2284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830156200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:10 Heat of formation + Delta-G solvation = -15.538237 kcal Electronic energy + Delta-G solvation = -28208.117239 eV Core-core repulsion = 24418.712447 eV Total energy + Delta-G solvation = -3789.404792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.24469 -36.96814 -36.71215 -36.27228 -34.98142 -33.40396 -32.37139 -31.99461 -30.54911 -28.15150 -28.06704 -25.42317 -24.32142 -23.47570 -22.49625 -21.30931 -21.16430 -19.42501 -18.13867 -17.17097 -16.89964 -16.47704 -16.17740 -15.97483 -15.42967 -15.09568 -14.68227 -14.33855 -14.27103 -13.89789 -13.70326 -13.44766 -13.38273 -13.08835 -13.04523 -12.86971 -12.11752 -12.00283 -11.93354 -11.80026 -11.58302 -11.39778 -11.26262 -11.18659 -10.97122 -10.89355 -10.71244 -10.56357 -10.50697 -10.40253 -10.07189 -9.93921 -9.69380 -9.41094 -9.12143 -8.92200 -8.71502 -8.51250 -8.03278 -6.09386 -4.19433 1.02726 1.11737 1.22315 3.34612 3.35076 3.40939 3.45279 3.75693 4.27727 4.42152 4.58685 4.67336 4.76088 4.90815 4.94482 4.97414 5.03741 5.17703 5.22493 5.26998 5.29793 5.40821 5.45951 5.48369 5.59269 5.63593 5.68403 5.79018 5.88683 5.94171 6.02761 6.07488 6.13956 6.21942 6.29537 6.37545 6.38843 6.46443 6.63330 6.66041 6.74704 6.94566 7.02673 7.29446 7.41798 7.85096 8.01740 8.24791 8.85454 9.51669 10.98311 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.004846 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.105568 B = 5776.674431 C = 7657.442655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -1.010 6.010 4 C 0.127 3.873 5 C -0.099 4.099 6 C 0.141 3.859 7 C -0.172 4.172 8 C -0.076 4.076 9 C -0.184 4.184 10 C 0.106 3.894 11 N -0.473 5.473 12 S 2.603 3.397 13 O -0.970 6.970 14 O -0.944 6.944 15 C -0.555 4.555 16 C 0.044 3.956 17 C -0.516 4.516 18 H 0.068 0.932 19 C 0.084 3.916 20 N -0.874 5.874 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.270 1.270 25 C -0.208 4.208 26 C -0.142 4.142 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.262 0.738 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -7.957 15.097 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 N -0.845 5.845 4 C 0.001 3.999 5 C -0.138 4.138 6 C 0.003 3.997 7 C -0.192 4.192 8 C -0.102 4.102 9 C -0.204 4.204 10 C -0.052 4.052 11 N -0.182 5.182 12 S 2.700 3.300 13 O -0.961 6.961 14 O -0.934 6.934 15 C -0.687 4.687 16 C 0.042 3.958 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.121 4.121 20 N -0.509 5.509 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.245 4.245 26 C -0.181 4.181 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.173 0.827 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.123 -7.002 13.847 16.681 hybrid contribution 1.134 0.149 1.161 1.630 sum -4.989 -6.853 15.007 17.236 Atomic orbital electron populations 1.22200 0.96298 1.01828 1.02749 1.21121 0.94577 0.82193 1.02503 1.58040 1.80507 1.23261 1.22706 1.21194 0.95143 0.98760 0.84846 1.21145 1.00383 0.99134 0.93183 1.21183 0.93704 0.89948 0.94876 1.21982 1.02702 1.01332 0.93200 1.21545 0.96050 0.94378 0.98224 1.22125 1.02910 0.95539 0.99864 1.22830 0.94280 1.00419 0.87645 1.67580 1.12773 1.07810 1.29996 1.05388 0.78225 0.74135 0.72209 1.93485 1.67319 1.76114 1.59155 1.93536 1.85781 1.31029 1.83080 1.30068 1.22271 1.07104 1.09306 1.18277 1.00181 0.93171 0.84173 1.20501 1.03557 0.88675 1.42551 0.91435 1.24931 0.94702 0.98623 0.93885 1.69976 1.11579 1.35587 1.33795 0.86605 0.77138 0.85031 0.79601 1.19932 1.21113 1.19425 1.23189 0.99839 1.01244 1.00264 1.22550 0.90728 1.00841 1.03967 0.92692 0.91542 0.91978 0.90298 0.91038 0.90891 0.87483 0.88881 0.89853 0.84880 0.85077 0.85027 0.82697 0.84867 0.88571 0.92795 0.90743 0.89556 0.89608 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.12 1.53 5.98 -4.04 -0.02 1.50 16 3 N -1.01 -15.93 2.72 -114.38 -0.31 -16.24 16 4 C 0.13 1.87 5.52 -4.04 -0.02 1.85 16 5 C -0.10 -1.33 5.94 -27.88 -0.17 -1.49 16 6 C 0.14 1.90 6.18 -82.59 -0.51 1.39 16 7 C -0.17 -1.81 9.71 -39.44 -0.38 -2.20 16 8 C -0.08 -0.70 10.18 -39.28 -0.40 -1.10 16 9 C -0.18 -1.76 10.11 -39.44 -0.40 -2.16 16 10 C 0.11 1.27 11.18 -17.55 -0.20 1.07 16 11 N -0.47 -7.18 9.88 -9.48 -0.09 -7.27 16 12 S 2.60 54.54 5.10 -107.50 -0.55 53.99 16 13 O -0.97 -21.55 16.75 -57.54 -0.96 -22.51 16 14 O -0.94 -23.33 16.21 -57.54 -0.93 -24.26 16 15 C -0.55 -11.87 6.03 37.15 0.22 -11.65 16 16 C 0.04 1.10 1.32 -155.66 -0.21 0.89 16 17 C -0.52 -14.38 8.20 -34.44 -0.28 -14.66 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C 0.08 2.32 5.38 -17.82 -0.10 2.23 16 20 N -0.87 -24.43 12.98 55.43 0.72 -23.71 16 21 Si 0.89 21.85 29.55 -169.99 -5.02 16.83 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.21 -4.63 9.96 -26.69 -0.27 -4.89 16 26 C -0.14 -3.26 9.49 -26.69 -0.25 -3.51 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.95 7.90 -51.93 -0.41 0.54 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.98 7.61 -51.93 -0.40 0.59 16 31 H 0.07 0.68 8.11 -51.93 -0.42 0.25 16 32 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.11 1.89 6.62 -51.93 -0.34 1.55 16 34 H 0.09 1.44 7.22 -51.93 -0.37 1.07 16 35 H 0.08 0.86 7.87 -51.92 -0.41 0.45 16 36 H 0.13 1.07 7.95 -52.48 -0.42 0.65 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 40 H 0.13 2.99 7.22 -51.92 -0.37 2.62 16 41 H 0.10 1.72 8.09 -51.93 -0.42 1.30 16 42 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 43 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 45 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 395.78 15.07 5.96 5.96 Total: -1.00 -34.25 395.78 -11.12 -45.38 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.34 Total: 6.24 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: -2.60 Total: -34.41 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.32 Total: -47.22 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -1.90 Total: -46.77 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 54.54 SS G_CDS: -0.55 Total: 53.99 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.25 -11.12 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830156200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.839 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds