Wall clock time and date at job start Tue Mar 31 2020 21:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47280 * 2 1 4 4 C 1.46502 * 119.99957 * 85.00159 * 3 2 1 5 5 C 1.52997 * 109.47256 * 84.99902 * 4 3 2 6 6 C 1.50700 * 109.47232 * 180.02562 * 5 4 3 7 7 C 1.38220 * 119.61788 * 125.01957 * 6 5 4 8 8 C 1.38626 * 119.16092 * 179.74526 * 7 6 5 9 9 C 1.38674 * 118.41887 * 0.47804 * 8 7 6 10 10 C 1.38177 * 119.16149 * 359.50370 * 9 8 7 11 11 N 1.31851 * 119.61427 * 304.99989 * 6 5 4 12 12 S 1.65603 * 119.99784 * 264.99909 * 3 2 1 13 13 O 1.42099 * 104.27801 * 26.07591 * 12 3 2 14 14 O 1.42100 * 104.27173 * 153.92968 * 12 3 2 15 15 C 1.81400 * 104.44922 * 270.00015 * 12 3 2 16 16 C 1.52993 * 109.46752 * 173.50299 * 15 12 3 17 17 C 1.50699 * 115.55345 * 65.18564 * 16 15 12 18 18 H 1.08002 * 120.00361 * 264.78503 * 17 16 15 19 19 C 1.37882 * 120.00141 * 84.78377 * 17 16 15 20 20 N 1.31517 * 119.99474 * 352.25997 * 19 17 16 21 21 Si 1.86798 * 120.00358 * 172.25787 * 19 17 16 22 22 H 1.48498 * 109.47090 * 89.99922 * 21 19 17 23 23 H 1.48498 * 109.47180 * 210.00017 * 21 19 17 24 24 H 1.48504 * 109.46921 * 329.99834 * 21 19 17 25 25 C 1.53004 * 117.50067 * 279.51270 * 16 15 12 26 26 C 1.53005 * 117.49802 * 210.85546 * 16 15 12 27 27 H 1.09004 * 109.47265 * 300.00356 * 1 2 3 28 28 H 1.09003 * 109.47204 * 59.99475 * 1 2 3 29 29 H 1.08990 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46827 * 239.99718 * 2 1 3 31 31 H 1.09000 * 109.46726 * 120.00379 * 2 1 3 32 32 H 1.09003 * 109.46824 * 325.00167 * 4 3 2 33 33 H 1.08999 * 109.46771 * 205.00293 * 4 3 2 34 34 H 1.09000 * 109.46895 * 59.99601 * 5 4 3 35 35 H 1.09008 * 109.46764 * 299.99896 * 5 4 3 36 36 H 1.08004 * 120.42169 * 359.95500 * 7 6 5 37 37 H 1.08004 * 120.79272 * 180.23600 * 8 7 6 38 38 H 1.07998 * 120.41944 * 179.77932 * 9 8 7 39 39 H 1.08007 * 119.61900 * 180.25700 * 10 9 8 40 40 H 1.09003 * 109.46916 * 293.50234 * 15 12 3 41 41 H 1.08997 * 109.47111 * 53.50446 * 15 12 3 42 42 H 0.97003 * 119.99289 * 185.03435 * 20 19 17 43 43 H 1.09003 * 117.49517 * 0.02562 * 25 16 15 44 44 H 1.08993 * 117.50025 * 145.01984 * 25 16 15 45 45 H 1.08994 * 117.50059 * 214.98149 * 26 16 15 46 46 H 1.09005 * 117.49362 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1087 1.2639 5 6 3.5152 1.7839 1.8918 6 6 3.6589 2.5317 3.1922 7 6 3.9457 1.8365 4.3519 8 6 4.0811 2.5344 5.5420 9 6 3.9124 3.9107 5.5227 10 6 3.6272 4.5374 4.3247 11 7 3.5100 3.8416 3.2104 12 16 2.4123 2.1201 -1.4287 13 8 1.6208 1.4496 -2.3999 14 8 2.2335 3.5055 -1.1676 15 6 4.1698 1.7388 -1.6661 16 6 4.6176 2.2339 -3.0427 17 6 4.5836 3.7277 -3.2389 18 1 3.7226 4.1930 -3.6957 19 6 5.6516 4.5006 -2.8351 20 7 6.6308 3.9592 -2.1438 21 14 5.7080 6.3164 -3.2699 22 1 5.0517 7.1033 -2.1951 23 1 7.1219 6.7489 -3.4071 24 1 4.9950 6.5404 -4.5532 25 6 4.2884 1.3551 -4.2511 26 6 5.7301 1.4542 -3.7464 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8097 1.9453 33 1 2.0922 3.1802 1.0756 34 1 4.3117 2.0828 1.2103 35 1 3.5812 0.7122 2.0801 36 1 4.0662 0.7634 4.3306 37 1 4.3087 2.0182 6.4629 38 1 4.0071 4.4860 6.4318 39 1 3.4984 5.6095 4.3005 40 1 4.7568 2.2345 -0.8929 41 1 4.3197 0.6611 -1.6012 42 1 7.3453 4.5162 -1.7971 43 1 3.7524 0.4243 -4.0654 44 1 4.0476 1.8573 -5.1880 45 1 6.4372 2.0215 -4.3515 46 1 6.1432 0.5886 -3.2284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830156200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:09 Heat of formation + Delta-G solvation = -37.671599 kcal Electronic energy + Delta-G solvation = -28209.077014 eV Core-core repulsion = 24418.712447 eV Total energy + Delta-G solvation = -3790.364567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.08995 -38.57885 -38.10815 -38.01046 -36.73987 -34.33478 -34.09854 -33.20395 -31.52214 -29.85921 -29.11294 -27.51178 -25.32855 -24.29944 -23.54202 -22.99025 -22.32715 -21.27803 -19.65241 -18.58225 -18.39636 -17.73027 -17.30058 -17.07586 -16.81603 -16.68349 -16.29970 -15.85842 -15.57040 -15.35011 -14.98419 -14.75153 -14.42025 -14.31739 -14.07939 -13.77135 -13.76632 -13.62620 -13.16045 -13.13065 -13.04412 -12.92107 -12.89757 -12.84030 -12.56878 -12.44992 -12.43039 -12.22313 -11.93585 -11.89557 -11.71521 -11.47467 -10.88685 -10.75827 -10.56662 -10.38111 -10.15003 -9.87697 -9.68128 -8.21348 -6.35121 -0.52282 0.22301 0.44883 1.34154 1.38153 1.45645 1.92565 2.37673 2.90039 3.01061 3.06342 3.33584 3.39437 3.43976 3.71978 3.86371 4.03163 4.07567 4.20109 4.21636 4.25066 4.30811 4.36850 4.45496 4.49505 4.53652 4.55243 4.61495 4.71743 4.75618 4.83052 4.87612 4.97105 4.98134 5.03322 5.13324 5.22171 5.28438 5.31494 5.34208 5.42677 5.48373 5.58489 5.69692 5.77479 5.88561 6.21249 6.70008 7.17263 7.36768 8.85454 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.004846 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.105568 B = 5776.674431 C = 7657.442655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.109 3.891 3 N -1.000 6.000 4 C 0.129 3.871 5 C -0.094 4.094 6 C 0.111 3.889 7 C -0.166 4.166 8 C -0.075 4.075 9 C -0.175 4.175 10 C 0.078 3.922 11 N -0.525 5.525 12 S 2.613 3.387 13 O -0.987 6.987 14 O -0.995 6.995 15 C -0.549 4.549 16 C 0.009 3.991 17 C -0.534 4.534 18 H 0.045 0.955 19 C 0.044 3.956 20 N -0.890 5.890 21 Si 0.931 3.069 22 H -0.280 1.280 23 H -0.270 1.270 24 H -0.267 1.267 25 C -0.195 4.195 26 C -0.137 4.137 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.264 0.736 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 -10.623 17.667 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 N -0.837 5.837 4 C 0.003 3.997 5 C -0.133 4.133 6 C -0.027 4.027 7 C -0.186 4.186 8 C -0.100 4.100 9 C -0.194 4.194 10 C -0.078 4.078 11 N -0.235 5.235 12 S 2.711 3.289 13 O -0.978 6.978 14 O -0.985 6.985 15 C -0.682 4.682 16 C 0.006 3.994 17 C -0.572 4.572 18 H 0.063 0.937 19 C -0.159 4.159 20 N -0.526 5.526 21 Si 0.756 3.244 22 H -0.206 1.206 23 H -0.195 1.195 24 H -0.191 1.191 25 C -0.232 4.232 26 C -0.176 4.176 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.139 0.861 36 H 0.181 0.819 37 H 0.187 0.813 38 H 0.181 0.819 39 H 0.179 0.821 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.073 0.927 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.021 -9.669 16.396 19.964 hybrid contribution 1.047 0.952 0.450 1.484 sum -4.974 -8.717 16.846 19.609 Atomic orbital electron populations 1.22227 0.95948 1.03433 1.01592 1.21566 0.94990 0.80139 1.04808 1.57619 1.80175 1.24705 1.21215 1.21212 0.97357 0.96593 0.84533 1.21105 0.98026 1.01365 0.92828 1.21287 0.95792 0.89733 0.95855 1.22288 1.01110 1.02777 0.92429 1.22037 0.94567 0.94234 0.99202 1.22472 1.00843 0.96302 0.99827 1.23120 0.95482 1.01023 0.88222 1.67471 1.14571 1.09382 1.32071 1.04735 0.77920 0.73207 0.73049 1.93448 1.67543 1.76060 1.60720 1.93470 1.86352 1.34514 1.84165 1.29929 1.22264 1.09173 1.06825 1.18407 1.02417 0.92040 0.86497 1.20676 1.02896 0.91070 1.42516 0.93673 1.25494 0.94707 1.01677 0.94044 1.70019 1.11848 1.36469 1.34305 0.85964 0.77790 0.81508 0.79143 1.20638 1.19480 1.19107 1.23237 0.99429 1.01517 0.98993 1.22512 0.90569 1.00977 1.03519 0.91888 0.94709 0.88980 0.90040 0.86611 0.88018 0.91451 0.92046 0.86061 0.81905 0.81338 0.81932 0.82110 0.86476 0.84803 0.92670 0.88086 0.90056 0.91586 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 10.24 71.98 0.74 -3.01 16 2 C 0.11 2.41 5.98 86.38 0.52 2.93 16 3 N -1.00 -30.73 2.72 -515.78 -1.40 -32.13 16 4 C 0.13 3.77 5.52 86.38 0.48 4.25 16 5 C -0.09 -2.44 5.94 29.85 0.18 -2.26 16 6 C 0.11 2.91 6.18 42.55 0.26 3.17 16 7 C -0.17 -3.00 9.71 22.36 0.22 -2.78 16 8 C -0.07 -1.10 10.18 22.47 0.23 -0.88 16 9 C -0.17 -2.94 10.11 22.36 0.23 -2.71 16 10 C 0.08 1.89 11.18 84.67 0.95 2.84 16 11 N -0.52 -16.45 9.88 -183.89 -1.82 -18.27 16 12 S 2.61 111.77 5.10 -56.49 -0.29 111.48 16 13 O -0.99 -44.16 16.75 -127.65 -2.14 -46.30 16 14 O -0.99 -52.13 16.21 -127.65 -2.07 -54.20 16 15 C -0.55 -23.57 6.03 71.98 0.43 -23.14 16 16 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 17 C -0.53 -30.85 8.20 25.60 0.21 -30.64 16 18 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 19 C 0.04 2.50 5.38 84.66 0.46 2.95 16 20 N -0.89 -50.84 12.98 21.45 0.28 -50.56 16 21 Si 0.93 45.91 29.55 68.60 2.03 47.94 16 22 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 25 C -0.19 -8.53 9.96 30.62 0.30 -8.22 16 26 C -0.14 -6.23 9.49 30.62 0.29 -5.94 16 27 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.03 0.96 7.90 -2.39 -0.02 0.94 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.79 7.61 -2.39 -0.02 1.77 16 31 H 0.12 1.60 8.11 -2.39 -0.02 1.58 16 32 H 0.10 2.36 8.11 -2.39 -0.02 2.34 16 33 H 0.07 2.54 6.62 -2.39 -0.02 2.52 16 34 H 0.06 1.97 7.22 -2.39 -0.02 1.95 16 35 H 0.12 2.09 7.87 -2.38 -0.02 2.07 16 36 H 0.16 1.85 7.95 -2.91 -0.02 1.82 16 37 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.16 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.12 5.43 7.22 -2.39 -0.02 5.41 16 41 H 0.13 4.54 8.09 -2.39 -0.02 4.52 16 42 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 43 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 44 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.09 3.61 8.14 -2.38 -0.02 3.59 16 Total: -1.00 -79.23 395.78 0.96 -78.27 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.95 Total: 26.84 kcal Atomic # 6 Polarization: -68.49 SS G_CDS: 5.41 Total: -63.07 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -2.94 Total: -100.96 kcal Atomic # 8 Polarization: -96.29 SS G_CDS: -4.21 Total: -100.50 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 111.77 SS G_CDS: -0.29 Total: 111.48 kcal Total: -79.23 0.96 -78.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830156200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.602 kcal (2) G-P(sol) polarization free energy of solvation -79.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds