Wall clock time and date at job start Tue Mar 31 2020 21:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47405 * 2 1 4 4 C 1.50697 * 109.47320 * 239.99732 * 2 1 3 5 5 O 1.21281 * 120.00556 * 240.00026 * 4 2 1 6 6 N 1.34774 * 119.99861 * 60.00510 * 4 2 1 7 7 C 1.46501 * 120.00199 * 179.72597 * 6 4 2 8 8 C 1.53003 * 109.47233 * 60.27111 * 7 6 4 9 9 C 1.52999 * 109.47336 * 180.27283 * 7 6 4 10 10 C 1.53002 * 109.47014 * 300.27274 * 7 6 4 11 11 N 1.46499 * 109.47048 * 120.00119 * 2 1 3 12 12 C 1.46493 * 120.00400 * 59.99700 * 11 2 1 13 13 C 1.34778 * 119.99759 * 240.00267 * 11 2 1 14 14 O 1.21752 * 120.00500 * 5.28542 * 13 11 2 15 15 C 1.46246 * 119.99842 * 185.28681 * 13 11 2 16 16 S 1.75667 * 125.22684 * 9.09729 * 15 13 11 17 17 C 1.75469 * 92.09018 * 180.02562 * 16 15 13 18 18 C 1.32761 * 111.36767 * 359.97438 * 17 16 15 19 19 C 1.39539 * 125.22644 * 188.79034 * 15 13 11 20 20 C 1.40541 * 123.71923 * 0.02562 * 19 15 13 21 21 H 1.07998 * 119.99825 * 24.47707 * 20 19 15 22 22 C 1.40309 * 120.00157 * 204.48836 * 20 19 15 23 23 N 1.30645 * 119.99620 * 10.01163 * 22 20 19 24 24 Si 1.86799 * 119.99940 * 190.01051 * 22 20 19 25 25 H 1.48493 * 109.47043 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46746 * 119.99878 * 24 22 20 27 27 H 1.48503 * 109.47013 * 239.99715 * 24 22 20 28 28 H 1.09000 * 109.47102 * 60.00275 * 1 2 3 29 29 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47414 * 300.00355 * 1 2 3 31 31 H 0.97001 * 120.00530 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.46644 * 59.99889 * 8 7 6 33 33 H 1.09000 * 109.47120 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47169 * 300.00081 * 8 7 6 35 35 H 1.09005 * 109.47282 * 59.99635 * 9 7 6 36 36 H 1.09002 * 109.47081 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47443 * 299.99818 * 9 7 6 38 38 H 1.08996 * 109.47220 * 60.00022 * 10 7 6 39 39 H 1.08994 * 109.47178 * 180.02562 * 10 7 6 40 40 H 1.09005 * 109.46806 * 299.99875 * 10 7 6 41 41 H 1.09008 * 109.47368 * 95.97477 * 12 11 2 42 42 H 1.08997 * 109.47781 * 215.98452 * 12 11 2 43 43 H 1.09004 * 109.47136 * 335.98276 * 12 11 2 44 44 H 1.08003 * 124.32224 * 179.97438 * 17 16 15 45 45 H 1.07997 * 122.79072 * 180.02562 * 18 17 16 46 46 H 0.97005 * 119.99459 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.2001 -0.9371 -3.6507 8 6 1.6908 -2.3798 -3.6567 9 6 1.6948 -0.2126 -4.8999 10 6 3.7301 -0.9364 -3.6447 11 7 2.0183 -0.6906 1.1961 12 6 1.6644 -2.0931 1.4281 13 6 2.7931 -0.0356 2.0833 14 8 3.0081 1.1544 1.9419 15 6 3.3756 -0.7542 3.2160 16 16 3.3477 -2.4973 3.4327 17 6 4.2206 -2.3870 4.9509 18 6 4.5038 -1.1262 5.2556 19 6 4.0441 -0.1612 4.2877 20 6 4.2429 1.2245 4.4127 21 1 3.5742 1.9128 3.9174 22 6 5.3103 1.7136 5.1809 23 7 6.2302 0.8948 5.6171 24 14 5.4161 3.5354 5.5798 25 1 4.2598 4.2428 4.9736 26 1 5.3928 3.7216 7.0529 27 1 6.6796 4.0898 5.0306 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.1489 0.5385 -2.5436 32 1 0.6008 -2.3802 -3.6609 33 1 2.0582 -2.8911 -4.5464 34 1 2.0508 -2.8959 -2.7667 35 1 2.0576 0.8153 -4.8956 36 1 2.0614 -0.7241 -5.7899 37 1 0.6047 -0.2130 -4.9043 38 1 4.0902 -1.4526 -2.7547 39 1 4.0972 -1.4472 -4.5348 40 1 4.0930 0.0914 -3.6404 41 1 2.4672 -2.7352 1.0656 42 1 1.5196 -2.2597 2.4955 43 1 0.7428 -2.3282 0.8955 44 1 4.4929 -3.2364 5.5599 45 1 5.0381 -0.8469 6.1516 46 1 6.9679 1.2329 6.1485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875573527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:33 Heat of formation + Delta-G solvation = -47.934234 kcal Electronic energy + Delta-G solvation = -28034.976384 eV Core-core repulsion = 24244.166796 eV Total energy + Delta-G solvation = -3790.809588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29228 -38.47378 -36.59766 -35.90236 -34.57629 -32.99020 -32.57607 -30.51967 -28.73760 -27.53342 -27.28773 -26.33909 -26.15185 -24.07960 -22.22697 -20.89724 -19.54279 -19.29975 -18.55055 -17.26988 -16.68901 -16.20720 -15.79367 -15.34360 -15.00366 -14.80422 -14.49463 -14.30521 -13.90111 -13.69535 -13.58516 -13.41852 -12.59416 -12.58132 -12.41007 -12.35858 -12.32542 -12.14358 -12.11422 -11.93895 -11.84515 -11.65605 -11.47231 -11.42563 -11.29404 -11.12379 -10.99740 -10.97439 -10.83304 -10.23840 -10.07126 -9.47505 -9.41601 -9.03817 -9.00194 -8.45899 -7.86468 -7.40731 -6.98739 -6.96533 -4.45829 2.22487 2.86212 2.97734 3.01901 3.10522 3.11764 3.30441 3.70061 3.83275 3.88673 3.91380 4.40910 4.60118 4.78988 4.90677 4.97059 5.21101 5.31488 5.34702 5.36245 5.48614 5.54168 5.64413 5.68355 5.70478 5.79214 5.85833 5.88137 5.91047 6.10139 6.15696 6.26134 6.29953 6.35769 6.50104 6.54837 6.64814 6.89147 7.17678 7.25516 7.32356 7.55495 7.64946 7.77207 8.32252 8.43217 8.44752 8.64348 8.78254 9.53580 9.92848 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003452 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.859809 B = 8110.010137 C = 9014.495268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.121 0.879 4 C 0.506 3.494 5 O -0.518 6.518 6 N -0.729 5.729 7 C 0.169 3.831 8 C -0.162 4.162 9 C -0.154 4.154 10 C -0.165 4.165 11 N -0.611 5.611 12 C 0.083 3.917 13 C 0.605 3.395 14 O -0.564 6.564 15 C -0.429 4.429 16 S -0.013 6.013 17 C -0.232 4.232 18 C -0.102 4.102 19 C 0.145 3.855 20 C -0.378 4.378 21 H 0.107 0.893 22 C 0.068 3.932 23 N -0.778 5.778 24 Si 0.923 3.077 25 H -0.254 1.254 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.397 0.603 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 -2.156 -12.886 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.139 0.861 4 C 0.292 3.708 5 O -0.393 6.393 6 N -0.383 5.383 7 C 0.083 3.917 8 C -0.220 4.220 9 C -0.211 4.211 10 C -0.223 4.223 11 N -0.345 5.345 12 C -0.062 4.062 13 C 0.404 3.596 14 O -0.447 6.447 15 C -0.547 4.547 16 S 0.244 5.756 17 C -0.365 4.365 18 C -0.134 4.134 19 C 0.133 3.867 20 C -0.409 4.409 21 H 0.124 0.876 22 C -0.154 4.154 23 N -0.402 5.402 24 Si 0.747 3.253 25 H -0.177 1.177 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.231 0.769 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.849 -3.486 -13.517 16.527 hybrid contribution 0.631 1.994 0.910 2.281 sum -8.218 -1.491 -12.606 15.122 Atomic orbital electron populations 1.22082 0.93654 1.02647 1.02826 1.20688 0.94733 0.98874 0.83983 0.86092 1.21350 0.79976 0.84880 0.84620 1.90633 1.36453 1.25788 1.86405 1.46233 1.54447 1.32350 1.05274 1.20286 0.94403 0.92645 0.84334 1.22208 1.00627 0.95695 1.03459 1.22081 1.01408 1.00786 0.96863 1.22233 0.94319 1.02275 1.03484 1.47247 1.53724 1.12312 1.21253 1.21731 0.99970 0.82354 1.02151 1.16927 0.76508 0.85666 0.80474 1.90642 1.62782 1.15272 1.75964 1.22548 1.34293 0.92261 1.05643 1.83274 1.61640 1.08454 1.22264 1.25438 1.08170 1.00103 1.02800 1.21607 0.99542 0.91440 1.00819 1.17908 0.87487 0.93451 0.87837 1.19928 1.08042 0.92342 1.20559 0.87559 1.26339 0.94604 1.01586 0.92850 1.69703 1.08127 1.37734 1.24677 0.85991 0.79838 0.80840 0.78679 1.17695 1.19540 1.19559 0.91762 0.92051 0.90887 0.76921 0.92926 0.92223 0.90198 0.91979 0.91068 0.92075 0.90085 0.92222 0.92778 0.91845 0.89742 0.92378 0.84997 0.84379 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.08 37.16 0.34 -1.52 16 2 C 0.13 2.06 3.05 -69.09 -0.21 1.85 16 3 H 0.12 2.13 6.91 -51.93 -0.36 1.77 16 4 C 0.51 7.85 6.47 -10.99 -0.07 7.78 16 5 O -0.52 -9.73 11.09 5.56 0.06 -9.67 16 6 N -0.73 -8.33 5.00 -47.61 -0.24 -8.57 16 7 C 0.17 1.78 1.06 -131.82 -0.14 1.64 16 8 C -0.16 -1.75 8.41 37.16 0.31 -1.44 16 9 C -0.15 -1.14 8.59 37.16 0.32 -0.82 16 10 C -0.17 -2.01 8.40 37.16 0.31 -1.70 16 11 N -0.61 -12.38 2.54 -176.97 -0.45 -12.83 16 12 C 0.08 1.51 7.43 59.84 0.44 1.96 16 13 C 0.60 15.19 7.60 -13.04 -0.10 15.09 16 14 O -0.56 -15.43 13.93 5.14 0.07 -15.36 16 15 C -0.43 -11.16 6.24 -35.88 -0.22 -11.38 16 16 S -0.01 -0.29 18.01 -107.50 -1.94 -2.22 16 17 C -0.23 -5.24 11.07 28.86 0.32 -4.92 16 18 C -0.10 -2.56 9.03 -39.12 -0.35 -2.91 16 19 C 0.14 3.94 5.66 -106.20 -0.60 3.34 16 20 C -0.38 -10.34 8.41 -37.94 -0.32 -10.66 16 21 H 0.11 3.03 6.27 -52.49 -0.33 2.70 16 22 C 0.07 1.68 5.39 -17.28 -0.09 1.59 16 23 N -0.78 -19.36 10.89 55.57 0.61 -18.76 16 24 Si 0.92 18.80 29.57 -169.99 -5.03 13.77 16 25 H -0.25 -5.26 7.11 56.52 0.40 -4.85 16 26 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 27 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 28 H 0.06 0.57 7.56 -51.93 -0.39 0.18 16 29 H 0.06 0.72 6.67 -51.93 -0.35 0.37 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.40 3.47 7.89 -40.82 -0.32 3.14 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.11 6.18 -51.93 -0.32 0.79 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 1.27 6.16 -51.93 -0.32 0.95 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 1.25 6.82 -51.92 -0.35 0.90 16 42 H 0.08 1.61 5.15 -27.81 -0.14 1.46 16 43 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 44 H 0.13 2.56 8.06 -52.48 -0.42 2.14 16 45 H 0.14 3.45 6.49 -52.49 -0.34 3.11 16 46 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -31.72 372.27 -7.87 -39.59 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -6.50 Total: 10.55 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -0.07 Total: -2.10 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.08 Total: -40.16 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.13 Total: -25.03 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.94 Total: -2.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.72 -7.87 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875573527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.346 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds