Wall clock time and date at job start Tue Mar 31 2020 21:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47405 * 2 1 4 4 C 1.50697 * 109.47320 * 239.99732 * 2 1 3 5 5 O 1.21281 * 120.00556 * 240.00026 * 4 2 1 6 6 N 1.34774 * 119.99861 * 60.00510 * 4 2 1 7 7 C 1.46501 * 120.00199 * 179.72597 * 6 4 2 8 8 C 1.53003 * 109.47233 * 60.27111 * 7 6 4 9 9 C 1.52999 * 109.47336 * 180.27283 * 7 6 4 10 10 C 1.53002 * 109.47014 * 300.27274 * 7 6 4 11 11 N 1.46499 * 109.47048 * 120.00119 * 2 1 3 12 12 C 1.46493 * 120.00400 * 59.99700 * 11 2 1 13 13 C 1.34778 * 119.99759 * 240.00267 * 11 2 1 14 14 O 1.21752 * 120.00500 * 5.28542 * 13 11 2 15 15 C 1.46246 * 119.99842 * 185.28681 * 13 11 2 16 16 S 1.75667 * 125.22684 * 9.09729 * 15 13 11 17 17 C 1.75469 * 92.09018 * 180.02562 * 16 15 13 18 18 C 1.32761 * 111.36767 * 359.97438 * 17 16 15 19 19 C 1.39539 * 125.22644 * 188.79034 * 15 13 11 20 20 C 1.40541 * 123.71923 * 0.02562 * 19 15 13 21 21 H 1.07998 * 119.99825 * 24.47707 * 20 19 15 22 22 C 1.40309 * 120.00157 * 204.48836 * 20 19 15 23 23 N 1.30645 * 119.99620 * 10.01163 * 22 20 19 24 24 Si 1.86799 * 119.99940 * 190.01051 * 22 20 19 25 25 H 1.48493 * 109.47043 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46746 * 119.99878 * 24 22 20 27 27 H 1.48503 * 109.47013 * 239.99715 * 24 22 20 28 28 H 1.09000 * 109.47102 * 60.00275 * 1 2 3 29 29 H 1.08996 * 109.47405 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47414 * 300.00355 * 1 2 3 31 31 H 0.97001 * 120.00530 * 359.97438 * 6 4 2 32 32 H 1.09000 * 109.46644 * 59.99889 * 8 7 6 33 33 H 1.09000 * 109.47120 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47169 * 300.00081 * 8 7 6 35 35 H 1.09005 * 109.47282 * 59.99635 * 9 7 6 36 36 H 1.09002 * 109.47081 * 180.02562 * 9 7 6 37 37 H 1.09005 * 109.47443 * 299.99818 * 9 7 6 38 38 H 1.08996 * 109.47220 * 60.00022 * 10 7 6 39 39 H 1.08994 * 109.47178 * 180.02562 * 10 7 6 40 40 H 1.09005 * 109.46806 * 299.99875 * 10 7 6 41 41 H 1.09008 * 109.47368 * 95.97477 * 12 11 2 42 42 H 1.08997 * 109.47781 * 215.98452 * 12 11 2 43 43 H 1.09004 * 109.47136 * 335.98276 * 12 11 2 44 44 H 1.08003 * 124.32224 * 179.97438 * 17 16 15 45 45 H 1.07997 * 122.79072 * 180.02562 * 18 17 16 46 46 H 0.97005 * 119.99459 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.2001 -0.9371 -3.6507 8 6 1.6908 -2.3798 -3.6567 9 6 1.6948 -0.2126 -4.8999 10 6 3.7301 -0.9364 -3.6447 11 7 2.0183 -0.6906 1.1961 12 6 1.6644 -2.0931 1.4281 13 6 2.7931 -0.0356 2.0833 14 8 3.0081 1.1544 1.9419 15 6 3.3756 -0.7542 3.2160 16 16 3.3477 -2.4973 3.4327 17 6 4.2206 -2.3870 4.9509 18 6 4.5038 -1.1262 5.2556 19 6 4.0441 -0.1612 4.2877 20 6 4.2429 1.2245 4.4127 21 1 3.5742 1.9128 3.9174 22 6 5.3103 1.7136 5.1809 23 7 6.2302 0.8948 5.6171 24 14 5.4161 3.5354 5.5798 25 1 4.2598 4.2428 4.9736 26 1 5.3928 3.7216 7.0529 27 1 6.6796 4.0898 5.0306 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.1489 0.5385 -2.5436 32 1 0.6008 -2.3802 -3.6609 33 1 2.0582 -2.8911 -4.5464 34 1 2.0508 -2.8959 -2.7667 35 1 2.0576 0.8153 -4.8956 36 1 2.0614 -0.7241 -5.7899 37 1 0.6047 -0.2130 -4.9043 38 1 4.0902 -1.4526 -2.7547 39 1 4.0972 -1.4472 -4.5348 40 1 4.0930 0.0914 -3.6404 41 1 2.4672 -2.7352 1.0656 42 1 1.5196 -2.2597 2.4955 43 1 0.7428 -2.3282 0.8955 44 1 4.4929 -3.2364 5.5599 45 1 5.0381 -0.8469 6.1516 46 1 6.9679 1.2329 6.1485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875573527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:32 Heat of formation + Delta-G solvation = -68.593215 kcal Electronic energy + Delta-G solvation = -28035.872225 eV Core-core repulsion = 24244.166796 eV Total energy + Delta-G solvation = -3791.705429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55508 -40.10444 -38.08729 -37.43731 -36.21045 -34.89060 -33.81962 -31.76714 -30.55672 -28.24894 -28.19781 -28.07292 -27.79258 -25.41467 -23.94565 -22.37893 -20.92670 -20.53326 -20.39819 -18.82538 -18.07708 -18.04062 -17.17786 -16.95004 -16.50622 -16.06747 -15.99790 -15.65226 -15.41426 -15.05526 -14.73820 -14.51865 -14.21181 -14.19687 -13.93114 -13.76084 -13.54445 -13.36612 -13.21317 -13.15950 -13.11986 -13.01596 -12.93106 -12.78354 -12.63436 -12.56371 -12.34843 -12.08496 -12.01934 -11.96217 -11.92072 -11.26541 -10.87711 -10.70325 -10.40350 -10.05943 -9.54873 -9.27556 -8.84724 -8.82339 -6.42866 0.32457 1.32450 1.33818 1.45779 1.50164 1.63612 1.80362 1.90998 2.01844 2.17578 2.39521 2.57662 3.32342 3.63100 3.90553 3.99872 4.07406 4.08257 4.15530 4.26429 4.37343 4.60578 4.67864 4.69232 4.70852 4.72611 4.78113 4.86044 4.88729 4.94860 4.99401 5.00727 5.01429 5.19320 5.22270 5.27516 5.35098 5.41247 5.42000 5.58961 5.65471 5.73504 5.87058 6.36044 6.54094 6.62175 6.68189 6.84870 7.30455 7.64422 8.09879 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003452 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.859809 B = 8110.010137 C = 9014.495268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.117 3.883 3 H 0.103 0.897 4 C 0.508 3.492 5 O -0.555 6.555 6 N -0.710 5.710 7 C 0.164 3.836 8 C -0.157 4.157 9 C -0.146 4.146 10 C -0.164 4.164 11 N -0.607 5.607 12 C 0.088 3.912 13 C 0.593 3.407 14 O -0.600 6.600 15 C -0.468 4.468 16 S 0.045 5.955 17 C -0.223 4.223 18 C -0.131 4.131 19 C 0.116 3.884 20 C -0.417 4.417 21 H 0.082 0.918 22 C 0.033 3.967 23 N -0.798 5.798 24 Si 0.992 3.008 25 H -0.266 1.266 26 H -0.247 1.247 27 H -0.261 1.261 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.413 0.587 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.168 0.832 45 H 0.134 0.866 46 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.605 -2.438 -14.589 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.009 3.991 3 H 0.121 0.879 4 C 0.293 3.707 5 O -0.433 6.433 6 N -0.364 5.364 7 C 0.079 3.921 8 C -0.215 4.215 9 C -0.203 4.203 10 C -0.222 4.222 11 N -0.340 5.340 12 C -0.056 4.056 13 C 0.392 3.608 14 O -0.486 6.486 15 C -0.586 4.586 16 S 0.302 5.698 17 C -0.356 4.356 18 C -0.163 4.163 19 C 0.104 3.896 20 C -0.448 4.448 21 H 0.100 0.900 22 C -0.186 4.186 23 N -0.423 5.423 24 Si 0.811 3.189 25 H -0.190 1.190 26 H -0.171 1.171 27 H -0.186 1.186 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.250 0.750 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.186 0.814 45 H 0.151 0.849 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.336 -3.796 -15.272 18.828 hybrid contribution 1.053 1.962 1.292 2.574 sum -9.282 -1.835 -13.980 16.881 Atomic orbital electron populations 1.22046 0.89888 1.03752 1.04416 1.21006 0.97585 0.97496 0.83006 0.87919 1.21121 0.79693 0.84405 0.85494 1.90638 1.38113 1.27527 1.87010 1.46096 1.53558 1.32409 1.04355 1.20487 0.93268 0.93225 0.85090 1.22151 1.01406 0.95406 1.02580 1.22034 1.02484 1.00664 0.95120 1.22215 0.95897 1.01681 1.02451 1.47196 1.52277 1.12958 1.21569 1.21734 1.01014 0.80915 1.01980 1.17099 0.77006 0.85474 0.81261 1.90596 1.64227 1.16745 1.77064 1.23079 1.34483 0.95105 1.05954 1.82921 1.60555 1.04977 1.21330 1.25938 1.06092 1.00347 1.03216 1.21505 1.01799 0.92093 1.00922 1.18350 0.88168 0.94240 0.88797 1.19929 1.09526 0.92511 1.22800 0.90045 1.27087 0.93459 1.05999 0.92063 1.69693 1.08410 1.39561 1.24617 0.85018 0.79376 0.74988 0.79533 1.19038 1.17080 1.18592 0.87776 0.91053 0.91749 0.75049 0.91541 0.90559 0.93626 0.91451 0.89650 0.90321 0.94155 0.90191 0.93101 0.93290 0.90463 0.88786 0.81411 0.84888 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.08 71.98 0.65 -2.52 16 2 C 0.12 3.80 3.05 44.24 0.13 3.94 16 3 H 0.10 3.74 6.91 -2.39 -0.02 3.72 16 4 C 0.51 15.54 6.47 87.66 0.57 16.11 16 5 O -0.56 -21.22 11.09 -3.03 -0.03 -21.26 16 6 N -0.71 -14.98 5.00 -422.92 -2.11 -17.09 16 7 C 0.16 3.13 1.06 3.60 0.00 3.13 16 8 C -0.16 -3.08 8.41 71.98 0.61 -2.47 16 9 C -0.15 -1.61 8.59 71.98 0.62 -0.99 16 10 C -0.16 -3.91 8.40 71.98 0.60 -3.30 16 11 N -0.61 -25.12 2.54 -832.00 -2.11 -27.23 16 12 C 0.09 3.18 7.43 127.77 0.95 4.13 16 13 C 0.59 31.18 7.60 86.32 0.66 31.84 16 14 O -0.60 -34.90 13.93 -4.51 -0.06 -34.96 16 15 C -0.47 -25.29 6.24 24.67 0.15 -25.14 16 16 S 0.04 1.97 18.01 -56.49 -1.02 0.95 16 17 C -0.22 -9.95 11.07 66.64 0.74 -9.22 16 18 C -0.13 -6.74 9.03 22.61 0.20 -6.54 16 19 C 0.12 6.62 5.66 -20.89 -0.12 6.50 16 20 C -0.42 -24.13 8.41 23.34 0.20 -23.94 16 21 H 0.08 4.99 6.27 -2.91 -0.02 4.97 16 22 C 0.03 1.70 5.39 85.37 0.46 2.16 16 23 N -0.80 -40.61 10.89 21.89 0.24 -40.37 16 24 Si 0.99 39.42 29.57 68.60 2.03 41.45 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 27 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 28 H 0.10 1.48 7.56 -2.39 -0.02 1.46 16 29 H 0.07 1.46 6.67 -2.39 -0.02 1.44 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.41 6.05 7.89 -92.71 -0.73 5.31 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 1.24 6.18 -2.39 -0.01 1.22 16 35 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.04 1.30 6.16 -2.39 -0.01 1.29 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.05 1.93 6.82 -2.38 -0.02 1.92 16 42 H 0.08 2.91 5.15 -17.73 -0.09 2.82 16 43 H 0.09 2.70 6.44 -2.38 -0.02 2.68 16 44 H 0.17 6.15 8.06 -2.91 -0.02 6.12 16 45 H 0.13 6.85 6.49 -2.91 -0.02 6.83 16 46 H 0.30 13.38 8.29 -92.70 -0.77 12.61 16 Total: -1.00 -75.06 372.27 3.56 -71.51 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.20 Total: 33.31 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 6.43 Total: -6.30 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.98 Total: -84.70 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.10 Total: -56.22 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.02 Total: 0.95 kcal Total: -75.06 3.56 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875573527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.913 kcal (2) G-P(sol) polarization free energy of solvation -75.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds