Wall clock time and date at job start Tue Mar 31 2020 21:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47005 * 2 1 4 4 C 1.46900 * 110.99935 * 189.99922 * 3 2 1 5 5 C 1.53244 * 109.33826 * 187.25516 * 4 3 2 6 6 N 1.47083 * 108.52198 * 306.17082 * 5 4 3 7 7 S 1.65595 * 120.87879 * 231.18952 * 6 5 4 8 8 O 1.42105 * 106.40149 * 203.53792 * 7 6 5 9 9 O 1.42098 * 106.40317 * 336.45665 * 7 6 5 10 10 C 1.76204 * 107.21987 * 90.00027 * 7 6 5 11 11 C 1.38233 * 119.99533 * 269.72685 * 10 7 6 12 12 C 1.38242 * 119.99838 * 179.79085 * 11 10 7 13 13 C 1.38234 * 119.99530 * 0.45506 * 12 11 10 14 14 C 1.50697 * 119.99617 * 179.79279 * 13 12 11 15 15 C 1.50704 * 109.47527 * 269.98291 * 14 13 12 16 16 H 1.07997 * 119.99601 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00282 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47030 * 59.99983 * 19 17 15 21 21 H 1.48508 * 109.46974 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47213 * 299.99880 * 19 17 15 23 23 C 1.38230 * 120.00331 * 359.77609 * 13 12 11 24 24 C 1.38226 * 120.00179 * 89.99674 * 10 7 6 25 25 C 1.47081 * 118.23823 * 51.45385 * 6 5 4 26 26 C 1.46903 * 111.00061 * 314.30228 * 3 2 1 27 27 H 1.09002 * 109.47133 * 299.99946 * 1 2 3 28 28 H 1.09008 * 109.47179 * 60.00160 * 1 2 3 29 29 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47565 * 240.00298 * 2 1 3 31 31 H 1.09001 * 109.46936 * 119.99542 * 2 1 3 32 32 H 1.08997 * 109.49456 * 67.29492 * 4 3 2 33 33 H 1.08998 * 109.49332 * 307.21038 * 4 3 2 34 34 H 1.08993 * 109.63010 * 186.45771 * 5 4 3 35 35 H 1.09002 * 109.63125 * 65.87683 * 5 4 3 36 36 H 1.08007 * 120.00465 * 359.97438 * 11 10 7 37 37 H 1.07996 * 119.99669 * 180.25053 * 12 11 10 38 38 H 1.09005 * 109.47265 * 29.98115 * 14 13 12 39 39 H 1.09001 * 109.47502 * 149.98090 * 14 13 12 40 40 H 0.97009 * 119.99930 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.00248 * 179.97438 * 23 13 12 42 42 H 1.07994 * 120.00174 * 359.97438 * 24 10 7 43 43 H 1.09008 * 109.62529 * 68.25521 * 25 6 5 44 44 H 1.08997 * 109.62521 * 188.83241 * 25 6 5 45 45 H 1.08995 * 109.49228 * 292.70276 * 26 3 2 46 46 H 1.08997 * 109.49494 * 52.78315 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4685 1.4312 -0.2381 5 6 3.9679 2.8678 -0.0513 6 7 3.1681 3.7558 -0.9087 7 16 3.8987 4.8249 -1.9409 8 8 2.9541 5.8587 -2.1824 9 8 5.1972 5.0656 -1.4163 10 6 4.1290 3.9927 -3.4768 11 6 5.2961 3.2910 -3.7145 12 6 5.4750 2.6344 -4.9178 13 6 4.4907 2.6874 -5.8870 14 6 4.6877 1.9756 -7.2005 15 6 5.3512 2.9069 -8.1822 16 1 5.6044 3.9138 -7.8847 17 6 5.6338 2.4740 -9.4603 18 7 5.3250 1.2481 -9.8226 19 14 6.4555 3.6287 -10.6772 20 1 7.7740 4.0545 -10.1428 21 1 6.6498 2.9271 -11.9716 22 1 5.5966 4.8223 -10.8845 23 6 3.3257 3.3930 -5.6512 24 6 3.1450 4.0460 -4.4462 25 6 1.7023 3.6731 -0.8208 26 6 1.2920 2.2007 -0.9815 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6806 1.1017 -1.2552 33 1 3.9746 0.7752 0.4701 34 1 5.0178 2.9306 -0.3374 35 1 3.8514 3.1634 0.9914 36 1 6.0669 3.2533 -2.9589 37 1 6.3851 2.0829 -5.1019 38 1 5.3181 1.0994 -7.0481 39 1 3.7201 1.6631 -7.5932 40 1 5.5236 0.9436 -10.7221 41 1 2.5569 3.4348 -6.4085 42 1 2.2349 4.5974 -4.2620 43 1 1.3722 4.0445 0.1495 44 1 1.2536 4.2686 -1.6159 45 1 1.5344 1.8605 -1.9882 46 1 0.2197 2.1027 -0.8124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884870535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:26 Heat of formation + Delta-G solvation = -43.582840 kcal Electronic energy + Delta-G solvation = -27717.973121 eV Core-core repulsion = 23927.352224 eV Total energy + Delta-G solvation = -3790.620897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.33043 -38.82175 -37.22859 -35.79753 -35.41631 -33.70219 -31.63636 -31.58024 -30.61548 -30.53685 -27.45255 -26.42039 -24.16520 -23.74844 -22.37613 -22.23438 -20.99169 -20.54938 -18.90407 -18.03584 -17.35497 -16.46813 -16.17274 -15.79792 -15.44946 -15.19183 -15.05846 -14.99426 -14.66678 -14.39729 -14.29556 -13.86935 -13.46595 -13.15782 -13.02046 -12.85862 -12.57565 -12.30113 -12.24986 -12.08340 -11.99170 -11.94337 -11.73339 -11.54223 -11.51285 -11.51095 -11.14812 -11.03228 -10.92466 -10.86281 -10.52734 -10.50637 -9.79050 -9.69693 -9.31096 -8.62043 -8.56082 -8.55821 -8.39718 -6.19319 -4.24588 0.43625 1.30758 1.76342 2.93162 3.24544 3.28691 3.32231 3.56806 3.78086 4.06438 4.30100 4.34978 4.44606 4.63060 4.78632 4.84116 5.01359 5.05647 5.11025 5.13355 5.14004 5.18743 5.19629 5.21635 5.36095 5.42956 5.55806 5.64168 5.67115 5.69150 5.76958 5.81215 5.85075 5.86781 5.88289 6.22151 6.29682 6.34548 6.50766 6.75323 6.75904 6.80849 6.87614 7.26050 7.40118 7.55844 7.75481 8.10693 8.79919 9.40517 10.90656 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003101 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.514100 B = 9027.025468 C =10085.611783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.039 3.961 5 C 0.128 3.872 6 N -1.002 6.002 7 S 2.694 3.306 8 O -0.962 6.962 9 O -0.962 6.962 10 C -0.704 4.704 11 C -0.024 4.024 12 C -0.145 4.145 13 C 0.026 3.974 14 C 0.040 3.960 15 C -0.519 4.519 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.145 4.145 24 C -0.024 4.024 25 C 0.128 3.872 26 C 0.031 3.969 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.043 0.957 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 -1.670 21.205 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.091 4.091 5 C 0.003 3.997 6 N -0.840 5.840 7 S 2.788 3.212 8 O -0.952 6.952 9 O -0.953 6.953 10 C -0.793 4.793 11 C -0.043 4.043 12 C -0.164 4.164 13 C 0.026 3.974 14 C 0.003 3.997 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.164 4.164 24 C -0.043 4.043 25 C 0.002 3.998 26 C -0.098 4.098 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.061 0.939 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.173 -0.730 21.730 23.228 hybrid contribution 0.624 -0.468 -2.191 2.326 sum -7.549 -1.199 19.539 20.981 Atomic orbital electron populations 1.21953 0.94962 1.02031 1.02545 1.22095 0.95826 0.88906 1.00944 1.61986 1.03738 1.10679 1.49706 1.22501 0.88527 0.97273 1.00768 1.21497 0.94570 0.88228 0.95412 1.57886 1.14530 1.56892 1.54661 1.01763 0.73002 0.73243 0.73154 1.93548 1.63132 1.52728 1.85838 1.93547 1.39207 1.83736 1.78763 1.30422 1.04396 1.22296 1.22176 1.20757 0.94067 0.92104 0.97398 1.21243 1.00021 1.01751 0.93407 1.21109 0.90766 0.89814 0.95757 1.18527 0.98547 0.95485 0.87103 1.20931 1.40117 0.98678 0.95950 0.92335 1.25000 0.95551 0.95308 0.98237 1.69939 1.47026 1.16379 1.19652 0.86532 0.80062 0.80730 0.80030 1.20021 1.21080 1.20012 1.21239 0.98939 0.99369 0.96877 1.20749 0.96420 0.94405 0.92738 1.21617 0.78525 0.96138 1.03484 1.22736 0.99487 0.93403 0.94212 0.91722 0.92167 0.92138 0.94716 0.90594 0.93801 0.89572 0.88824 0.90191 0.85391 0.85389 0.94771 0.94773 0.92556 0.85391 0.85405 0.90195 0.88856 0.93850 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.02 9.16 37.16 0.34 -0.67 16 2 C 0.05 0.38 5.99 -3.82 -0.02 0.35 16 3 N -0.54 -4.65 4.78 -234.02 -1.12 -5.77 16 4 C 0.04 0.34 5.58 -3.70 -0.02 0.32 16 5 C 0.13 1.20 6.53 -3.60 -0.02 1.18 16 6 N -1.00 -11.01 3.32 -112.97 -0.38 -11.38 16 7 S 2.69 38.34 5.70 -107.50 -0.61 37.73 16 8 O -0.96 -15.59 16.05 -57.17 -0.92 -16.50 16 9 O -0.96 -15.59 16.05 -57.17 -0.92 -16.50 16 10 C -0.70 -11.13 5.97 -39.59 -0.24 -11.36 16 11 C -0.02 -0.39 9.52 -39.58 -0.38 -0.76 16 12 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 13 C 0.03 0.53 5.07 -104.63 -0.53 0.00 16 14 C 0.04 0.98 5.10 -29.03 -0.15 0.83 16 15 C -0.52 -14.08 9.09 -34.44 -0.31 -14.39 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 19 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.15 -2.69 9.70 -39.58 -0.38 -3.08 16 24 C -0.02 -0.38 9.52 -39.59 -0.38 -0.76 16 25 C 0.13 1.20 6.56 -3.36 -0.02 1.18 16 26 C 0.03 0.27 5.06 -3.46 -0.02 0.25 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.40 6.18 -51.92 -0.32 0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.09 0.85 7.22 -51.93 -0.37 0.48 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 1.78 7.61 -52.48 -0.40 1.38 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.13 1.78 7.62 -52.49 -0.40 1.38 16 43 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.09 0.85 7.21 -51.93 -0.37 0.48 16 45 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.67 5.73 -51.93 -0.30 0.37 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -32.32 381.16 -12.29 -44.61 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.19 Total: -0.86 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -2.61 Total: -28.40 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: -0.76 Total: -41.91 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.84 Total: -33.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 38.34 SS G_CDS: -0.61 Total: 37.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.32 -12.29 -44.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884870535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.026 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds