Wall clock time and date at job start Tue Mar 31 2020 21:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47005 * 2 1 4 4 C 1.46900 * 110.99935 * 189.99922 * 3 2 1 5 5 C 1.53244 * 109.33826 * 187.25516 * 4 3 2 6 6 N 1.47083 * 108.52198 * 306.17082 * 5 4 3 7 7 S 1.65595 * 120.87879 * 231.18952 * 6 5 4 8 8 O 1.42105 * 106.40149 * 203.53792 * 7 6 5 9 9 O 1.42098 * 106.40317 * 336.45665 * 7 6 5 10 10 C 1.76204 * 107.21987 * 90.00027 * 7 6 5 11 11 C 1.38233 * 119.99533 * 269.72685 * 10 7 6 12 12 C 1.38242 * 119.99838 * 179.79085 * 11 10 7 13 13 C 1.38234 * 119.99530 * 0.45506 * 12 11 10 14 14 C 1.50697 * 119.99617 * 179.79279 * 13 12 11 15 15 C 1.50704 * 109.47527 * 269.98291 * 14 13 12 16 16 H 1.07997 * 119.99601 * 359.97438 * 15 14 13 17 17 C 1.37869 * 120.00282 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99966 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99959 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47030 * 59.99983 * 19 17 15 21 21 H 1.48508 * 109.46974 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47213 * 299.99880 * 19 17 15 23 23 C 1.38230 * 120.00331 * 359.77609 * 13 12 11 24 24 C 1.38226 * 120.00179 * 89.99674 * 10 7 6 25 25 C 1.47081 * 118.23823 * 51.45385 * 6 5 4 26 26 C 1.46903 * 111.00061 * 314.30228 * 3 2 1 27 27 H 1.09002 * 109.47133 * 299.99946 * 1 2 3 28 28 H 1.09008 * 109.47179 * 60.00160 * 1 2 3 29 29 H 1.09001 * 109.47068 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47565 * 240.00298 * 2 1 3 31 31 H 1.09001 * 109.46936 * 119.99542 * 2 1 3 32 32 H 1.08997 * 109.49456 * 67.29492 * 4 3 2 33 33 H 1.08998 * 109.49332 * 307.21038 * 4 3 2 34 34 H 1.08993 * 109.63010 * 186.45771 * 5 4 3 35 35 H 1.09002 * 109.63125 * 65.87683 * 5 4 3 36 36 H 1.08007 * 120.00465 * 359.97438 * 11 10 7 37 37 H 1.07996 * 119.99669 * 180.25053 * 12 11 10 38 38 H 1.09005 * 109.47265 * 29.98115 * 14 13 12 39 39 H 1.09001 * 109.47502 * 149.98090 * 14 13 12 40 40 H 0.97009 * 119.99930 * 179.97438 * 18 17 15 41 41 H 1.07994 * 120.00248 * 179.97438 * 23 13 12 42 42 H 1.07994 * 120.00174 * 359.97438 * 24 10 7 43 43 H 1.09008 * 109.62529 * 68.25521 * 25 6 5 44 44 H 1.08997 * 109.62521 * 188.83241 * 25 6 5 45 45 H 1.08995 * 109.49228 * 292.70276 * 26 3 2 46 46 H 1.08997 * 109.49494 * 52.78315 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4685 1.4312 -0.2381 5 6 3.9679 2.8678 -0.0513 6 7 3.1681 3.7558 -0.9087 7 16 3.8987 4.8249 -1.9409 8 8 2.9541 5.8587 -2.1824 9 8 5.1972 5.0656 -1.4163 10 6 4.1290 3.9927 -3.4768 11 6 5.2961 3.2910 -3.7145 12 6 5.4750 2.6344 -4.9178 13 6 4.4907 2.6874 -5.8870 14 6 4.6877 1.9756 -7.2005 15 6 5.3512 2.9069 -8.1822 16 1 5.6044 3.9138 -7.8847 17 6 5.6338 2.4740 -9.4603 18 7 5.3250 1.2481 -9.8226 19 14 6.4555 3.6287 -10.6772 20 1 7.7740 4.0545 -10.1428 21 1 6.6498 2.9271 -11.9716 22 1 5.5966 4.8223 -10.8845 23 6 3.3257 3.3930 -5.6512 24 6 3.1450 4.0460 -4.4462 25 6 1.7023 3.6731 -0.8208 26 6 1.2920 2.2007 -0.9815 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6806 1.1017 -1.2552 33 1 3.9746 0.7752 0.4701 34 1 5.0178 2.9306 -0.3374 35 1 3.8514 3.1634 0.9914 36 1 6.0669 3.2533 -2.9589 37 1 6.3851 2.0829 -5.1019 38 1 5.3181 1.0994 -7.0481 39 1 3.7201 1.6631 -7.5932 40 1 5.5236 0.9436 -10.7221 41 1 2.5569 3.4348 -6.4085 42 1 2.2349 4.5974 -4.2620 43 1 1.3722 4.0445 0.1495 44 1 1.2536 4.2686 -1.6159 45 1 1.5344 1.8605 -1.9882 46 1 0.2197 2.1027 -0.8124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884870535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:26 Heat of formation + Delta-G solvation = -64.748841 kcal Electronic energy + Delta-G solvation = -27718.890948 eV Core-core repulsion = 23927.352224 eV Total energy + Delta-G solvation = -3791.538724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.27204 -40.02319 -38.44533 -37.01422 -36.16744 -35.62322 -33.34651 -32.33872 -31.98997 -31.20055 -29.27211 -27.13162 -25.61919 -24.88129 -23.75453 -22.95234 -22.44306 -21.42234 -19.93233 -19.13504 -18.62932 -18.44766 -17.23472 -16.88016 -16.52230 -16.24184 -16.07374 -16.02496 -15.75816 -15.53078 -15.44856 -15.13508 -14.65130 -14.49954 -14.18167 -14.00003 -13.76433 -13.53251 -13.43831 -13.41869 -13.23911 -13.06456 -12.90493 -12.70369 -12.67809 -12.64185 -12.24291 -12.22516 -12.13254 -12.07477 -11.81169 -11.70967 -11.59494 -11.42441 -10.67373 -10.20229 -9.99975 -9.94741 -9.24997 -8.29335 -6.42495 -0.70792 -0.09209 0.36028 1.37057 1.38648 1.47190 1.88385 2.32968 2.55233 2.74603 2.94107 3.03238 3.18774 3.64751 3.81784 3.93149 4.00640 4.09986 4.12265 4.19471 4.32930 4.35870 4.42325 4.43766 4.49719 4.51722 4.62699 4.71000 4.76896 4.78088 4.87071 4.94539 4.96058 5.06764 5.07881 5.14055 5.18877 5.20708 5.22486 5.29789 5.34007 5.54162 5.64256 5.82600 5.89081 6.06965 6.08728 6.11484 6.68946 7.26771 8.80550 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014546 B = 0.003101 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.514100 B = 9027.025468 C =10085.611783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 N -0.537 5.537 4 C 0.039 3.961 5 C 0.122 3.878 6 N -0.994 5.994 7 S 2.717 3.283 8 O -0.978 6.978 9 O -0.979 6.979 10 C -0.701 4.701 11 C -0.020 4.020 12 C -0.155 4.155 13 C -0.004 4.004 14 C 0.049 3.951 15 C -0.536 4.536 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.268 1.268 23 C -0.155 4.155 24 C -0.019 4.019 25 C 0.121 3.879 26 C 0.032 3.968 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.028 0.972 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.155 0.845 37 H 0.129 0.871 38 H 0.012 0.988 39 H 0.013 0.987 40 H 0.268 0.732 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.027 0.973 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -0.679 23.233 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 N -0.263 5.263 4 C -0.090 4.090 5 C -0.003 4.003 6 N -0.834 5.834 7 S 2.808 3.192 8 O -0.969 6.969 9 O -0.969 6.969 10 C -0.788 4.788 11 C -0.039 4.039 12 C -0.173 4.173 13 C -0.004 4.004 14 C 0.013 3.987 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.193 1.193 23 C -0.173 4.173 24 C -0.039 4.039 25 C -0.004 4.004 26 C -0.098 4.098 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.172 0.828 37 H 0.147 0.853 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.077 0.923 41 H 0.147 0.853 42 H 0.172 0.828 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.045 0.955 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.561 0.251 23.743 25.241 hybrid contribution 0.683 -0.808 -2.656 2.859 sum -7.878 -0.557 21.087 22.518 Atomic orbital electron populations 1.21925 0.94068 1.02597 1.02553 1.22153 0.96608 0.88292 1.00843 1.62043 1.03653 1.11216 1.49346 1.22525 0.88895 0.97196 1.00427 1.21735 0.94554 0.88148 0.95839 1.57688 1.15449 1.56746 1.53544 1.01125 0.72420 0.73092 0.72516 1.93525 1.63446 1.53838 1.86072 1.93523 1.40455 1.84215 1.78692 1.30907 1.03764 1.20892 1.23207 1.21009 0.94880 0.91104 0.96882 1.21298 0.99677 1.02388 0.93976 1.20812 0.92873 0.91856 0.94859 1.18248 0.96576 0.94832 0.89085 1.21260 1.40285 0.98866 0.96970 0.92819 1.25864 0.96079 0.96825 1.00101 1.70050 1.48091 1.18052 1.20234 0.85515 0.79147 0.78761 0.77761 1.19368 1.20307 1.19341 1.21295 0.98340 0.99643 0.98063 1.21002 0.97505 0.93680 0.91669 1.21857 0.77264 0.96692 1.04547 1.22757 1.00573 0.92994 0.93443 0.91327 0.92424 0.91398 0.95861 0.89645 0.95401 0.87719 0.88537 0.88536 0.82781 0.85289 0.96925 0.96921 0.92331 0.85283 0.82787 0.88540 0.88575 0.95474 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.16 71.98 0.66 -1.03 16 2 C 0.05 0.65 5.99 86.30 0.52 1.16 16 3 N -0.54 -8.16 4.78 -894.31 -4.27 -12.43 16 4 C 0.04 0.60 5.58 86.38 0.48 1.08 16 5 C 0.12 1.97 6.53 86.35 0.56 2.54 16 6 N -0.99 -19.50 3.32 -511.32 -1.70 -21.20 16 7 S 2.72 71.57 5.70 -56.49 -0.32 71.25 16 8 O -0.98 -29.53 16.05 -128.00 -2.05 -31.58 16 9 O -0.98 -29.52 16.05 -128.00 -2.06 -31.58 16 10 C -0.70 -21.16 5.97 22.27 0.13 -21.03 16 11 C -0.02 -0.62 9.52 22.27 0.21 -0.41 16 12 C -0.15 -5.80 9.70 22.27 0.22 -5.59 16 13 C 0.00 -0.16 5.07 -19.87 -0.10 -0.26 16 14 C 0.05 2.55 5.10 29.10 0.15 2.70 16 15 C -0.54 -29.99 9.09 25.60 0.23 -29.75 16 16 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 17 C 0.01 0.58 5.46 84.65 0.46 1.05 16 18 N -0.93 -54.27 13.29 21.44 0.28 -53.99 16 19 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C -0.15 -5.80 9.70 22.27 0.22 -5.59 16 24 C -0.02 -0.61 9.52 22.27 0.21 -0.40 16 25 C 0.12 1.97 6.56 86.50 0.57 2.54 16 26 C 0.03 0.49 5.06 86.54 0.44 0.93 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.66 6.18 -2.38 -0.01 0.64 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.02 0.37 8.08 -2.39 -0.02 0.35 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 34 H 0.10 1.52 7.22 -2.39 -0.02 1.50 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.15 4.00 7.61 -2.91 -0.02 3.97 16 37 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.01 0.68 8.09 -2.38 -0.02 0.66 16 39 H 0.01 0.68 8.09 -2.39 -0.02 0.66 16 40 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 41 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 42 H 0.15 3.99 7.62 -2.91 -0.02 3.97 16 43 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.10 1.52 7.21 -2.39 -0.02 1.51 16 45 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.11 1.32 5.73 -2.39 -0.01 1.31 16 Total: -1.00 -69.55 381.16 -2.17 -71.72 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.96 Total: 14.20 kcal Atomic # 6 Polarization: -57.01 SS G_CDS: 4.96 Total: -52.06 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -5.69 Total: -87.61 kcal Atomic # 8 Polarization: -59.05 SS G_CDS: -4.11 Total: -63.16 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 71.57 SS G_CDS: -0.32 Total: 71.25 kcal Total: -69.55 -2.17 -71.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884870535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.971 kcal (2) G-P(sol) polarization free energy of solvation -69.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds