Wall clock time and date at job start Tue Mar 31 2020 21:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47128 * 2 1 4 4 C 1.47482 * 110.99773 * 294.32690 * 3 2 1 5 5 C 1.53514 * 87.93328 * 221.29622 * 4 3 2 6 6 C 1.47479 * 111.00140 * 198.35435 * 3 2 1 7 7 H 1.09000 * 113.47422 * 23.94013 * 6 3 2 8 8 C 1.52996 * 113.47863 * 253.46606 * 6 3 2 9 9 N 1.46507 * 109.46901 * 54.99996 * 8 6 3 10 10 S 1.65596 * 120.00054 * 164.99741 * 9 8 6 11 11 O 1.42096 * 106.40311 * 178.54276 * 10 9 8 12 12 O 1.42107 * 106.40189 * 311.46319 * 10 9 8 13 13 C 1.76202 * 107.21647 * 65.00014 * 10 9 8 14 14 C 1.38231 * 120.00208 * 269.72586 * 13 10 9 15 15 C 1.38234 * 119.99790 * 179.76496 * 14 13 10 16 16 C 1.38236 * 120.00039 * 0.48923 * 15 14 13 17 17 C 1.50704 * 119.99787 * 179.76623 * 16 15 14 18 18 C 1.50694 * 109.47223 * 270.01969 * 17 16 15 19 19 H 1.08000 * 119.99773 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99926 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99980 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99597 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47332 * 59.99869 * 22 20 18 24 24 H 1.48508 * 109.46793 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47136 * 299.99200 * 22 20 18 26 26 C 1.38233 * 120.00309 * 359.78743 * 16 15 14 27 27 C 1.38238 * 119.99530 * 359.95726 * 26 16 15 28 28 H 1.09000 * 109.47368 * 305.08502 * 1 2 3 29 29 H 1.08997 * 109.46799 * 65.08778 * 1 2 3 30 30 H 1.09003 * 109.46981 * 185.08276 * 1 2 3 31 31 H 1.08997 * 109.47755 * 239.99935 * 2 1 3 32 32 H 1.09005 * 109.47222 * 119.99328 * 2 1 3 33 33 H 1.09002 * 113.47435 * 336.06302 * 4 3 2 34 34 H 1.08998 * 113.47525 * 106.52698 * 4 3 2 35 35 H 1.08988 * 114.17240 * 139.67226 * 5 4 3 36 36 H 1.08998 * 114.16913 * 272.18800 * 5 4 3 37 37 H 1.08998 * 109.46835 * 174.99710 * 8 6 3 38 38 H 1.09000 * 109.47477 * 295.00437 * 8 6 3 39 39 H 0.97002 * 120.00073 * 345.00777 * 9 8 6 40 40 H 1.07999 * 119.99916 * 0.02562 * 14 13 10 41 41 H 1.08004 * 120.00045 * 180.25320 * 15 14 13 42 42 H 1.08997 * 109.47413 * 30.02582 * 17 16 15 43 43 H 1.09007 * 109.46673 * 150.01795 * 17 16 15 44 44 H 0.97006 * 119.99903 * 180.02562 * 21 20 18 45 45 H 1.07993 * 120.00310 * 179.97438 * 26 16 15 46 46 H 1.08002 * 120.00040 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6611 2.0724 -1.2546 5 6 3.0634 2.6969 -1.2483 6 6 3.4279 1.4478 -0.4336 7 1 3.7307 0.6009 -1.0494 8 6 4.4055 1.7293 0.7092 9 7 4.2185 0.7342 1.7680 10 16 5.3663 0.5553 2.9483 11 8 4.8820 -0.4481 3.8302 12 8 6.6176 0.4655 2.2808 13 6 5.4021 2.0551 3.8725 14 6 6.2514 3.0787 3.4963 15 6 6.2759 4.2571 4.2186 16 6 5.4583 4.4080 5.3230 17 6 5.4889 5.6907 6.1134 18 6 6.5211 5.5830 7.2061 19 1 7.0976 4.6765 7.3168 20 6 6.7294 6.6417 8.0645 21 7 6.0270 7.7453 7.9300 22 14 8.0094 6.5083 9.4184 23 1 9.3447 6.2674 8.8153 24 1 8.0394 7.7723 10.1975 25 1 7.6618 5.3797 10.3188 26 6 4.6131 3.3822 5.7026 27 6 4.5848 2.2058 4.9772 28 1 -0.3634 0.5907 0.8409 29 1 -0.3633 0.4329 -0.9320 30 1 -0.3633 -1.0237 0.0910 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.4924 1.3921 -2.0895 34 1 0.8602 2.8022 -1.1363 35 1 3.5357 2.7433 -2.2294 36 1 3.1331 3.6319 -0.6924 37 1 5.4277 1.6737 0.3347 38 1 4.2189 2.7256 1.1099 39 1 3.4225 0.1800 1.7777 40 1 6.8928 2.9594 2.6357 41 1 6.9366 5.0585 3.9223 42 1 5.7445 6.5189 5.4525 43 1 4.5086 5.8683 6.5558 44 1 6.1738 8.4903 8.5337 45 1 3.9747 3.4999 6.5656 46 1 3.9241 1.4044 5.2735 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885356634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:45 Heat of formation + Delta-G solvation = -47.887684 kcal Electronic energy + Delta-G solvation = -26980.033171 eV Core-core repulsion = 23189.225601 eV Total energy + Delta-G solvation = -3790.807569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27406 -40.22040 -38.35109 -36.97834 -35.91809 -35.58453 -33.67030 -33.31117 -31.95050 -29.23964 -28.76258 -28.19597 -25.58775 -24.19348 -23.69421 -22.73360 -22.46760 -20.76052 -20.44638 -19.05199 -18.60238 -18.44731 -17.48319 -17.15636 -16.85207 -16.53073 -15.98793 -15.97452 -15.65146 -15.25894 -15.16670 -14.91319 -14.61751 -14.44789 -14.34381 -13.92837 -13.50238 -13.41156 -13.39825 -13.28041 -13.20278 -13.15487 -13.06187 -12.71146 -12.66405 -12.65325 -12.26490 -12.14618 -12.02955 -11.98750 -11.69545 -11.60701 -11.45586 -11.23031 -10.64966 -10.49057 -9.95034 -9.94156 -9.77456 -8.26856 -6.39698 -0.61428 -0.05019 0.41106 1.38480 1.40196 1.48644 2.00454 2.34970 2.56554 2.81706 3.03542 3.05672 3.30927 3.54224 3.82030 3.91235 3.98388 4.03317 4.06748 4.16833 4.26324 4.34360 4.41515 4.47750 4.48886 4.52495 4.66481 4.74700 4.82790 4.83550 4.91936 4.92361 4.99837 5.05162 5.10925 5.13354 5.23296 5.25483 5.26292 5.31179 5.34409 5.47578 5.67135 5.87053 5.93419 6.05186 6.10340 6.18275 6.71856 7.29260 8.83080 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.002624 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.935027 B =10666.637194 C =11303.562043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.008 3.992 3 N -0.486 5.486 4 C 0.000 4.000 5 C -0.133 4.133 6 C 0.020 3.980 7 H 0.099 0.901 8 C 0.124 3.876 9 N -1.100 6.100 10 S 2.725 3.275 11 O -0.989 6.989 12 O -0.980 6.980 13 C -0.699 4.699 14 C -0.018 4.018 15 C -0.153 4.153 16 C -0.003 4.003 17 C 0.049 3.951 18 C -0.535 4.535 19 H 0.054 0.946 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.156 4.156 27 C -0.020 4.020 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.421 0.579 40 H 0.159 0.841 41 H 0.132 0.868 42 H 0.014 0.986 43 H 0.012 0.988 44 H 0.268 0.732 45 H 0.127 0.873 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 -14.386 -22.049 27.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 N -0.209 5.209 4 C -0.128 4.128 5 C -0.171 4.171 6 C -0.091 4.091 7 H 0.116 0.884 8 C -0.002 4.002 9 N -0.863 5.863 10 S 2.815 3.185 11 O -0.979 6.979 12 O -0.970 6.970 13 C -0.786 4.786 14 C -0.037 4.037 15 C -0.172 4.172 16 C -0.003 4.003 17 C 0.012 3.988 18 C -0.573 4.573 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.194 1.194 26 C -0.175 4.175 27 C -0.039 4.039 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.076 0.924 45 H 0.145 0.855 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.490 -14.605 -21.170 27.084 hybrid contribution 0.082 0.499 0.709 0.871 sum -8.408 -14.105 -20.461 26.235 Atomic orbital electron populations 1.21728 0.94164 1.02385 1.02188 1.22765 0.97130 0.90631 1.01555 1.69012 1.04672 1.14087 1.33171 1.23713 0.98624 0.98596 0.91904 1.23216 0.95886 0.96929 1.01096 1.23714 0.90123 1.00221 0.95009 0.88357 1.21550 1.00357 0.91309 0.86958 1.55188 1.39325 1.51115 1.40691 1.00761 0.72836 0.72540 0.72330 1.93530 1.81333 1.57011 1.66058 1.93535 1.42554 1.86289 1.74644 1.30764 1.10932 1.22670 1.14254 1.21052 0.93850 0.90720 0.98090 1.21310 1.00510 0.99065 0.96339 1.20815 0.91008 0.96218 0.92303 1.18252 0.96693 0.89947 0.93889 1.21263 1.20893 1.00659 1.14448 0.92820 1.25864 0.98284 0.94744 1.00026 1.70048 1.41865 1.05200 1.39346 0.85520 0.79266 0.77704 0.78722 1.19293 1.20342 1.19446 1.21283 1.01166 0.93895 1.01172 1.20988 0.94672 0.96629 0.91581 0.92925 0.92208 0.91264 0.92800 0.90975 0.90026 0.89852 0.88408 0.88881 0.88869 0.90990 0.74107 0.82345 0.85034 0.96729 0.97021 0.92356 0.85484 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.82 71.98 0.71 -0.95 16 2 C 0.01 0.09 5.34 86.30 0.46 0.55 16 3 N -0.49 -6.78 5.94 -902.06 -5.36 -12.14 16 4 C 0.00 0.00 6.68 83.58 0.56 0.56 16 5 C -0.13 -1.29 8.00 30.94 0.25 -1.04 16 6 C 0.02 0.25 3.30 42.19 0.14 0.39 16 7 H 0.10 0.96 7.63 -2.39 -0.02 0.94 16 8 C 0.12 1.97 6.36 86.38 0.55 2.52 16 9 N -1.10 -20.79 5.95 -187.48 -1.12 -21.91 16 10 S 2.73 70.97 5.74 -56.49 -0.32 70.64 16 11 O -0.99 -30.70 17.28 -128.00 -2.21 -32.91 16 12 O -0.98 -29.09 16.75 -128.00 -2.14 -31.24 16 13 C -0.70 -21.23 5.95 22.27 0.13 -21.10 16 14 C -0.02 -0.56 9.52 22.27 0.21 -0.35 16 15 C -0.15 -5.71 9.70 22.27 0.22 -5.50 16 16 C 0.00 -0.13 5.07 -19.86 -0.10 -0.23 16 17 C 0.05 2.54 5.10 29.10 0.15 2.69 16 18 C -0.53 -30.04 9.09 25.60 0.23 -29.80 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 20 C 0.01 0.55 5.46 84.66 0.46 1.02 16 21 N -0.93 -54.55 13.29 21.45 0.28 -54.26 16 22 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C -0.16 -6.02 9.70 22.27 0.22 -5.80 16 27 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 28 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.59 7.54 -2.39 -0.02 0.57 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.52 7.56 -2.39 -0.02 0.51 16 32 H 0.07 0.92 6.54 -2.38 -0.02 0.90 16 33 H 0.08 0.62 7.84 -2.39 -0.02 0.60 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 1.06 7.94 -2.39 -0.02 1.04 16 37 H 0.09 1.32 7.75 -2.39 -0.02 1.31 16 38 H 0.07 1.20 7.88 -2.39 -0.02 1.18 16 39 H 0.42 7.06 6.34 -96.75 -0.61 6.44 16 40 H 0.16 3.94 7.61 -2.91 -0.02 3.92 16 41 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 42 H 0.01 0.79 8.09 -2.39 -0.02 0.77 16 43 H 0.01 0.63 8.09 -2.38 -0.02 0.61 16 44 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 45 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 46 H 0.15 4.20 7.62 -2.91 -0.02 4.18 16 Total: -1.00 -70.99 387.59 -4.09 -75.08 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.36 Total: 18.33 kcal Atomic # 6 Polarization: -61.87 SS G_CDS: 4.39 Total: -57.47 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -6.19 Total: -88.31 kcal Atomic # 8 Polarization: -59.79 SS G_CDS: -4.36 Total: -64.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 70.97 SS G_CDS: -0.32 Total: 70.64 kcal Total: -70.99 -4.09 -75.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885356634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.191 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds