Wall clock time and date at job start Tue Mar 31 2020 21:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.47479 * 110.99763 * 74.03345 * 3 2 1 5 5 C 1.53505 * 87.93474 * 138.70263 * 4 3 2 6 6 C 1.47490 * 111.00052 * 170.00011 * 3 2 1 7 7 H 1.09000 * 113.47331 * 336.12459 * 6 3 2 8 8 C 1.52997 * 113.47305 * 106.53386 * 6 3 2 9 9 N 1.46499 * 109.47276 * 305.00057 * 8 6 3 10 10 S 1.65593 * 120.00092 * 165.00366 * 9 8 6 11 11 O 1.42100 * 106.40505 * 178.53888 * 10 9 8 12 12 O 1.42105 * 106.40244 * 311.45841 * 10 9 8 13 13 C 1.76202 * 107.21874 * 64.99766 * 10 9 8 14 14 C 1.38234 * 120.00170 * 269.72861 * 13 10 9 15 15 C 1.38236 * 120.00142 * 179.78953 * 14 13 10 16 16 C 1.38236 * 119.99790 * 0.43743 * 15 14 13 17 17 C 1.50695 * 120.00206 * 179.83307 * 16 15 14 18 18 C 1.50697 * 109.47345 * 269.98358 * 17 16 15 19 19 H 1.07999 * 120.00416 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00280 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00464 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99727 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46951 * 89.99914 * 22 20 18 24 24 H 1.48496 * 109.46989 * 210.00146 * 22 20 18 25 25 H 1.48507 * 109.46790 * 330.00239 * 22 20 18 26 26 C 1.38237 * 120.00223 * 359.81783 * 16 15 14 27 27 C 1.38238 * 119.99612 * 90.00356 * 13 10 9 28 28 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 33 33 H 1.09006 * 113.47568 * 253.47084 * 4 3 2 34 34 H 1.09008 * 113.47840 * 23.93221 * 4 3 2 35 35 H 1.09005 * 114.17014 * 220.32592 * 5 4 3 36 36 H 1.09005 * 114.17385 * 87.62060 * 5 4 3 37 37 H 1.08997 * 109.47081 * 65.00014 * 8 6 3 38 38 H 1.09001 * 109.46700 * 185.00293 * 8 6 3 39 39 H 0.97006 * 120.00074 * 345.00079 * 9 8 6 40 40 H 1.07995 * 119.99905 * 359.97438 * 14 13 10 41 41 H 1.07995 * 120.00279 * 180.27273 * 15 14 13 42 42 H 1.09001 * 109.46618 * 29.98063 * 17 16 15 43 43 H 1.08994 * 109.47316 * 149.97668 * 17 16 15 44 44 H 0.97003 * 120.00152 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.00365 * 180.02562 * 26 16 15 46 46 H 1.08000 * 120.00289 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8387 2.0095 1.3237 5 6 3.2290 2.6382 1.1555 6 6 3.4743 1.4313 0.2391 7 1 3.8560 0.5562 0.7649 8 6 4.2870 1.7711 -1.0119 9 7 3.9534 0.8280 -2.0821 10 16 4.3858 1.1625 -3.6451 11 8 3.9571 0.0553 -4.4259 12 8 3.9729 2.4985 -3.8985 13 6 6.1466 1.1652 -3.7100 14 6 6.8447 2.3375 -3.4885 15 6 8.2263 2.3387 -3.5351 16 6 8.9094 1.1693 -3.8123 17 6 10.4154 1.1713 -3.8668 18 6 10.8667 1.4709 -5.2731 19 1 10.1362 1.6423 -6.0498 20 6 12.2125 1.5262 -5.5682 21 7 12.6064 1.7871 -6.7955 22 14 13.4762 1.2304 -4.2246 23 1 13.8029 -0.2169 -4.1623 24 1 14.7080 2.0035 -4.5249 25 1 12.9221 1.6695 -2.9186 26 6 8.2112 -0.0020 -4.0390 27 6 6.8297 -0.0040 -3.9882 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.0316 2.7416 1.3518 34 1 1.7838 1.2890 2.1400 35 1 3.8315 2.6386 2.0639 36 1 3.2253 3.5978 0.6384 37 1 4.0505 2.7851 -1.3344 38 1 5.3506 1.7009 -0.7842 39 1 3.4792 0.0074 -1.8751 40 1 6.3108 3.2519 -3.2760 41 1 8.7718 3.2537 -3.3577 42 1 10.8024 1.9338 -3.1908 43 1 10.7912 0.1937 -3.5651 44 1 13.5532 1.8264 -7.0030 45 1 8.7449 -0.9156 -4.2551 46 1 6.2841 -0.9192 -4.1652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885356635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:49 Heat of formation + Delta-G solvation = -20.135724 kcal Electronic energy + Delta-G solvation = -26900.853215 eV Core-core repulsion = 23111.249061 eV Total energy + Delta-G solvation = -3789.604154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.74645 -38.88319 -37.10724 -35.72039 -35.12186 -33.68024 -33.16801 -31.73844 -30.63722 -28.14015 -27.96589 -27.67501 -23.59920 -23.47781 -22.42533 -22.24538 -20.74846 -20.28152 -19.34522 -17.84479 -17.39952 -16.91454 -16.71728 -16.47128 -15.59941 -15.26469 -15.09950 -14.59574 -14.51906 -14.29193 -14.27071 -13.86780 -13.77928 -13.16906 -12.83503 -12.79059 -12.67499 -12.54698 -12.29967 -12.22982 -11.98812 -11.90162 -11.88045 -11.77225 -11.74462 -11.43367 -11.13533 -10.96518 -10.91902 -10.83112 -10.52960 -10.24762 -10.10560 -9.59436 -9.51110 -9.28920 -8.70890 -8.63273 -8.44622 -6.18797 -4.20343 0.52189 1.27119 1.73592 3.04935 3.19589 3.28056 3.28722 3.52493 3.78771 4.00416 4.09745 4.28909 4.30027 4.48893 4.53476 4.67202 4.77213 4.84554 4.86528 5.07646 5.08874 5.18598 5.20647 5.23093 5.25406 5.34410 5.40711 5.44540 5.57704 5.58893 5.68026 5.70616 5.80276 5.81805 5.82883 5.96983 6.16371 6.25041 6.44776 6.66000 6.69358 6.70993 6.80669 6.84113 7.29574 7.30024 7.53308 8.34288 8.85013 9.39321 10.93677 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002499 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.366342 B =11202.212308 C =11837.274814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.012 3.988 3 N -0.461 5.461 4 C -0.003 4.003 5 C -0.138 4.138 6 C 0.019 3.981 7 H 0.085 0.915 8 C 0.136 3.864 9 N -1.113 6.113 10 S 2.699 3.301 11 O -0.967 6.967 12 O -0.961 6.961 13 C -0.701 4.701 14 C -0.024 4.024 15 C -0.143 4.143 16 C 0.030 3.970 17 C 0.006 3.994 18 C -0.520 4.520 19 H 0.075 0.925 20 C 0.072 3.928 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.144 4.144 27 C -0.021 4.021 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.412 0.588 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.266 0.734 45 H 0.129 0.871 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.618 -2.266 19.505 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 N -0.184 5.184 4 C -0.132 4.132 5 C -0.176 4.176 6 C -0.092 4.092 7 H 0.103 0.897 8 C 0.009 3.991 9 N -0.872 5.872 10 S 2.791 3.209 11 O -0.957 6.957 12 O -0.951 6.951 13 C -0.790 4.790 14 C -0.043 4.043 15 C -0.162 4.162 16 C 0.030 3.970 17 C -0.031 4.031 18 C -0.558 4.558 19 H 0.093 0.907 20 C -0.131 4.131 21 N -0.532 5.532 22 Si 0.706 3.294 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.163 4.163 27 C -0.041 4.041 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.246 0.754 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.255 -1.646 18.025 27.918 hybrid contribution 1.677 -1.174 1.493 2.534 sum -19.578 -2.820 19.518 27.789 Atomic orbital electron populations 1.21709 0.94393 1.01782 1.02622 1.22702 0.97070 0.90757 1.01136 1.69010 1.06181 1.15405 1.27783 1.23732 0.98743 0.99105 0.91653 1.23225 0.96554 0.98235 0.99626 1.23639 0.90709 0.99231 0.95647 0.89696 1.21281 0.98282 0.93383 0.86169 1.55437 1.73445 1.32584 1.25759 1.01566 0.73908 0.73489 0.71925 1.93563 1.81376 1.53960 1.66833 1.93562 1.80845 1.37402 1.83245 1.30424 1.25443 1.00864 1.22297 1.20793 0.94774 0.95568 0.93178 1.21215 0.93578 0.98723 1.02650 1.20696 0.98221 0.92071 0.86027 1.18978 0.86931 0.97960 0.99206 1.20821 0.92967 1.49581 0.92385 0.90664 1.24993 0.98333 0.94319 0.95425 1.69887 1.16090 1.48433 1.18749 0.86788 0.81175 0.78726 0.82706 1.20065 1.21070 1.18945 1.21221 0.93493 0.99104 1.02439 1.20772 0.94860 0.95834 0.92606 0.92765 0.92184 0.91629 0.94009 0.90573 0.89519 0.91388 0.90180 0.88167 0.89512 0.91071 0.75366 0.85058 0.85240 0.94816 0.95287 0.92371 0.85290 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.02 37.16 0.37 -0.57 16 2 C 0.01 0.08 5.37 -3.82 -0.02 0.06 16 3 N -0.46 -3.59 6.06 -236.49 -1.43 -5.02 16 4 C 0.00 -0.02 7.00 -7.55 -0.05 -0.07 16 5 C -0.14 -0.78 8.00 -26.21 -0.21 -0.99 16 6 C 0.02 0.13 3.21 -71.43 -0.23 -0.10 16 7 H 0.09 0.50 7.77 -51.93 -0.40 0.10 16 8 C 0.14 1.17 6.36 -4.04 -0.03 1.14 16 9 N -1.11 -11.20 5.86 -10.62 -0.06 -11.26 16 10 S 2.70 37.70 5.74 -107.50 -0.62 37.09 16 11 O -0.97 -15.88 17.28 -57.17 -0.99 -16.87 16 12 O -0.96 -15.82 16.75 -57.17 -0.96 -16.78 16 13 C -0.70 -10.83 5.95 -39.58 -0.24 -11.06 16 14 C -0.02 -0.37 9.52 -39.58 -0.38 -0.75 16 15 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 16 C 0.03 0.60 5.07 -104.63 -0.53 0.07 16 17 C 0.01 0.14 4.17 -29.04 -0.12 0.02 16 18 C -0.52 -14.27 9.65 -34.44 -0.33 -14.60 16 19 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 20 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 21 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 22 Si 0.88 20.56 27.47 -169.99 -4.67 15.89 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 26 C -0.14 -2.59 9.70 -39.58 -0.38 -2.97 16 27 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 28 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.24 7.56 -51.93 -0.39 -0.15 16 32 H 0.08 0.53 6.51 -51.93 -0.34 0.20 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.34 7.70 -51.92 -0.40 -0.06 16 35 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.59 7.94 -51.93 -0.41 0.18 16 37 H 0.09 0.80 7.48 -51.93 -0.39 0.41 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.41 3.51 6.81 -34.46 -0.23 3.27 16 40 H 0.13 1.76 7.61 -52.49 -0.40 1.36 16 41 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 42 H 0.03 0.74 7.14 -51.93 -0.37 0.37 16 43 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 46 H 0.13 1.80 7.62 -52.49 -0.40 1.41 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -34.35 385.03 -12.23 -46.58 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.07 Total: 2.14 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: -3.00 Total: -31.56 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.72 Total: -42.29 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.95 Total: -33.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.67 Total: 15.89 kcal Atomic # 16 Polarization: 37.70 SS G_CDS: -0.62 Total: 37.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.35 -12.23 -46.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885356635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.444 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds