Wall clock time and date at job start Tue Mar 31 2020 21:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.47094 * 2 1 4 4 C 1.47479 * 110.99763 * 74.03345 * 3 2 1 5 5 C 1.53505 * 87.93474 * 138.70263 * 4 3 2 6 6 C 1.47490 * 111.00052 * 170.00011 * 3 2 1 7 7 H 1.09000 * 113.47331 * 336.12459 * 6 3 2 8 8 C 1.52997 * 113.47305 * 106.53386 * 6 3 2 9 9 N 1.46499 * 109.47276 * 305.00057 * 8 6 3 10 10 S 1.65593 * 120.00092 * 165.00366 * 9 8 6 11 11 O 1.42100 * 106.40505 * 178.53888 * 10 9 8 12 12 O 1.42105 * 106.40244 * 311.45841 * 10 9 8 13 13 C 1.76202 * 107.21874 * 64.99766 * 10 9 8 14 14 C 1.38234 * 120.00170 * 269.72861 * 13 10 9 15 15 C 1.38236 * 120.00142 * 179.78953 * 14 13 10 16 16 C 1.38236 * 119.99790 * 0.43743 * 15 14 13 17 17 C 1.50695 * 120.00206 * 179.83307 * 16 15 14 18 18 C 1.50697 * 109.47345 * 269.98358 * 17 16 15 19 19 H 1.07999 * 120.00416 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00280 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00464 * 179.97438 * 20 18 17 22 22 Si 1.86809 * 119.99727 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46951 * 89.99914 * 22 20 18 24 24 H 1.48496 * 109.46989 * 210.00146 * 22 20 18 25 25 H 1.48507 * 109.46790 * 330.00239 * 22 20 18 26 26 C 1.38237 * 120.00223 * 359.81783 * 16 15 14 27 27 C 1.38238 * 119.99612 * 90.00356 * 13 10 9 28 28 H 1.09002 * 109.47153 * 299.99508 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99681 * 1 2 3 31 31 H 1.08996 * 109.47853 * 120.00463 * 2 1 3 32 32 H 1.09002 * 109.47153 * 240.00492 * 2 1 3 33 33 H 1.09006 * 113.47568 * 253.47084 * 4 3 2 34 34 H 1.09008 * 113.47840 * 23.93221 * 4 3 2 35 35 H 1.09005 * 114.17014 * 220.32592 * 5 4 3 36 36 H 1.09005 * 114.17385 * 87.62060 * 5 4 3 37 37 H 1.08997 * 109.47081 * 65.00014 * 8 6 3 38 38 H 1.09001 * 109.46700 * 185.00293 * 8 6 3 39 39 H 0.97006 * 120.00074 * 345.00079 * 9 8 6 40 40 H 1.07995 * 119.99905 * 359.97438 * 14 13 10 41 41 H 1.07995 * 120.00279 * 180.27273 * 15 14 13 42 42 H 1.09001 * 109.46618 * 29.98063 * 17 16 15 43 43 H 1.08994 * 109.47316 * 149.97668 * 17 16 15 44 44 H 0.97003 * 120.00152 * 179.97438 * 21 20 18 45 45 H 1.07994 * 120.00365 * 180.02562 * 26 16 15 46 46 H 1.08000 * 120.00289 * 359.97438 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8387 2.0095 1.3237 5 6 3.2290 2.6382 1.1555 6 6 3.4743 1.4313 0.2391 7 1 3.8560 0.5562 0.7649 8 6 4.2870 1.7711 -1.0119 9 7 3.9534 0.8280 -2.0821 10 16 4.3858 1.1625 -3.6451 11 8 3.9571 0.0553 -4.4259 12 8 3.9729 2.4985 -3.8985 13 6 6.1466 1.1652 -3.7100 14 6 6.8447 2.3375 -3.4885 15 6 8.2263 2.3387 -3.5351 16 6 8.9094 1.1693 -3.8123 17 6 10.4154 1.1713 -3.8668 18 6 10.8667 1.4709 -5.2731 19 1 10.1362 1.6423 -6.0498 20 6 12.2125 1.5262 -5.5682 21 7 12.6064 1.7871 -6.7955 22 14 13.4762 1.2304 -4.2246 23 1 13.8029 -0.2169 -4.1623 24 1 14.7080 2.0035 -4.5249 25 1 12.9221 1.6695 -2.9186 26 6 8.2112 -0.0020 -4.0390 27 6 6.8297 -0.0040 -3.9882 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.0316 2.7416 1.3518 34 1 1.7838 1.2890 2.1400 35 1 3.8315 2.6386 2.0639 36 1 3.2253 3.5978 0.6384 37 1 4.0505 2.7851 -1.3344 38 1 5.3506 1.7009 -0.7842 39 1 3.4792 0.0074 -1.8751 40 1 6.3108 3.2519 -3.2760 41 1 8.7718 3.2537 -3.3577 42 1 10.8024 1.9338 -3.1908 43 1 10.7912 0.1937 -3.5651 44 1 13.5532 1.8264 -7.0030 45 1 8.7449 -0.9156 -4.2551 46 1 6.2841 -0.9192 -4.1652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885356635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:48 Heat of formation + Delta-G solvation = -45.886201 kcal Electronic energy + Delta-G solvation = -26901.969839 eV Core-core repulsion = 23111.249061 eV Total energy + Delta-G solvation = -3790.720779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24074 -40.25235 -38.34451 -36.96520 -35.92119 -35.53022 -33.66364 -33.54453 -31.96707 -29.70414 -28.78363 -28.15770 -25.28022 -24.15342 -23.71502 -22.76540 -22.31144 -20.89158 -20.35061 -19.02743 -18.98118 -18.46371 -17.43538 -17.21265 -16.75060 -16.52374 -16.07816 -15.98618 -15.65284 -15.36547 -15.05684 -14.92637 -14.60731 -14.46293 -14.43022 -14.15207 -13.62145 -13.47483 -13.44723 -13.29086 -13.20673 -13.15346 -12.97417 -12.75730 -12.56111 -12.50819 -12.22566 -12.06980 -11.94021 -11.92684 -11.71852 -11.61620 -11.53348 -11.39046 -10.82581 -10.38804 -9.96221 -9.93840 -9.76843 -8.33262 -6.40642 -0.62462 -0.08119 0.39388 1.36520 1.38346 1.49826 2.03007 2.32867 2.54874 2.78825 3.01061 3.04916 3.32336 3.55360 3.81686 3.88939 3.97897 4.03647 4.08400 4.11396 4.27504 4.32623 4.43349 4.46382 4.47006 4.55861 4.67478 4.71289 4.78614 4.84618 4.85797 4.91288 5.00178 5.01598 5.05405 5.09871 5.12168 5.17871 5.24267 5.28985 5.32523 5.48067 5.49620 5.77820 5.93830 6.07838 6.19075 6.19280 6.66015 7.23185 8.83130 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002499 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.366342 B =11202.212308 C =11837.274814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.009 3.991 3 N -0.486 5.486 4 C -0.002 4.002 5 C -0.132 4.132 6 C 0.020 3.980 7 H 0.100 0.900 8 C 0.126 3.874 9 N -1.097 6.097 10 S 2.723 3.277 11 O -0.991 6.991 12 O -0.984 6.984 13 C -0.698 4.698 14 C -0.021 4.021 15 C -0.152 4.152 16 C -0.002 4.002 17 C 0.012 3.988 18 C -0.526 4.526 19 H 0.025 0.975 20 C 0.008 3.992 21 N -0.947 5.947 22 Si 0.955 3.045 23 H -0.265 1.265 24 H -0.284 1.284 25 H -0.240 1.240 26 C -0.154 4.154 27 C -0.022 4.022 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.422 0.578 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.269 0.731 45 H 0.134 0.866 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 -2.827 22.658 31.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.120 4.120 3 N -0.209 5.209 4 C -0.130 4.130 5 C -0.171 4.171 6 C -0.091 4.091 7 H 0.117 0.883 8 C 0.000 4.000 9 N -0.860 5.860 10 S 2.814 3.186 11 O -0.981 6.981 12 O -0.974 6.974 13 C -0.785 4.785 14 C -0.040 4.040 15 C -0.171 4.171 16 C -0.002 4.002 17 C -0.025 4.025 18 C -0.564 4.564 19 H 0.044 0.956 20 C -0.190 4.190 21 N -0.587 5.587 22 Si 0.777 3.223 23 H -0.190 1.190 24 H -0.210 1.210 25 H -0.163 1.163 26 C -0.173 4.173 27 C -0.041 4.041 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.259 0.741 40 H 0.174 0.826 41 H 0.154 0.846 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.152 0.848 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.947 -2.216 21.189 30.587 hybrid contribution 1.698 -0.979 0.482 2.018 sum -20.249 -3.195 21.671 29.831 Atomic orbital electron populations 1.21693 0.94373 1.02211 1.02051 1.22747 0.97149 0.90578 1.01510 1.69005 1.06770 1.16014 1.29153 1.23759 0.98845 0.99203 0.91203 1.23219 0.96538 0.97418 0.99888 1.23694 0.90078 1.00418 0.94913 0.88253 1.21550 0.99596 0.92635 0.86263 1.55084 1.72882 1.33395 1.24643 1.00782 0.72917 0.72435 0.72493 1.93527 1.81452 1.54600 1.68517 1.93534 1.80879 1.38740 1.84223 1.30771 1.26460 1.00560 1.20694 1.21057 0.94065 0.96691 0.92219 1.21362 0.94617 0.98360 1.02733 1.20598 0.96974 0.93703 0.88976 1.18824 0.89194 0.98467 0.96016 1.21063 0.92288 1.49030 0.93996 0.95627 1.26033 1.00914 0.93944 0.98104 1.70059 1.16754 1.50397 1.21509 0.85599 0.77650 0.79050 0.80007 1.18955 1.21014 1.16317 1.21354 0.94502 0.98861 1.02598 1.21025 0.94208 0.97055 0.91850 0.92329 0.91283 0.93169 0.92709 0.91053 0.89794 0.90111 0.88447 0.88724 0.90192 0.89703 0.74138 0.82623 0.84606 0.93932 0.94236 0.92238 0.84829 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.02 71.98 0.72 -0.94 16 2 C 0.01 0.10 5.37 86.30 0.46 0.56 16 3 N -0.49 -6.58 6.06 -902.13 -5.47 -12.05 16 4 C 0.00 -0.01 7.00 83.57 0.58 0.57 16 5 C -0.13 -1.15 8.00 30.94 0.25 -0.90 16 6 C 0.02 0.22 3.21 42.18 0.14 0.36 16 7 H 0.10 0.84 7.77 -2.39 -0.02 0.82 16 8 C 0.13 1.87 6.36 86.38 0.55 2.42 16 9 N -1.10 -19.81 5.86 -187.50 -1.10 -20.91 16 10 S 2.72 71.92 5.74 -56.49 -0.32 71.59 16 11 O -0.99 -31.21 17.28 -128.00 -2.21 -33.42 16 12 O -0.98 -31.13 16.75 -128.00 -2.14 -33.27 16 13 C -0.70 -20.48 5.95 22.27 0.13 -20.35 16 14 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 15 C -0.15 -5.32 9.70 22.27 0.22 -5.10 16 16 C 0.00 -0.09 5.07 -19.87 -0.10 -0.19 16 17 C 0.01 0.54 4.17 29.10 0.12 0.66 16 18 C -0.53 -29.70 9.65 25.60 0.25 -29.46 16 19 H 0.03 1.64 7.98 -2.91 -0.02 1.62 16 20 C 0.01 0.43 5.47 84.66 0.46 0.89 16 21 N -0.95 -58.64 13.96 21.45 0.30 -58.35 16 22 Si 0.95 42.14 27.47 68.60 1.88 44.02 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 26 C -0.15 -5.49 9.70 22.27 0.22 -5.28 16 27 C -0.02 -0.69 9.52 22.27 0.21 -0.47 16 28 H 0.06 0.60 7.67 -2.39 -0.02 0.58 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 0.49 7.56 -2.39 -0.02 0.47 16 32 H 0.07 0.87 6.51 -2.39 -0.02 0.86 16 33 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.08 0.56 7.70 -2.38 -0.02 0.54 16 35 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.09 0.94 7.94 -2.38 -0.02 0.92 16 37 H 0.08 1.32 7.48 -2.39 -0.02 1.30 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.42 6.27 6.81 -96.74 -0.66 5.61 16 40 H 0.16 3.86 7.61 -2.91 -0.02 3.83 16 41 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 42 H 0.04 1.81 7.14 -2.39 -0.02 1.79 16 43 H 0.04 1.67 7.51 -2.39 -0.02 1.65 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 46 H 0.15 3.95 7.62 -2.91 -0.02 3.92 16 Total: -1.00 -75.62 385.03 -4.38 -80.00 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.26 Total: 20.01 kcal Atomic # 6 Polarization: -62.06 SS G_CDS: 4.42 Total: -57.64 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -6.27 Total: -91.30 kcal Atomic # 8 Polarization: -62.34 SS G_CDS: -4.36 Total: -66.69 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Atomic # 16 Polarization: 71.92 SS G_CDS: -0.32 Total: 71.59 kcal Total: -75.62 -4.38 -80.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885356635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.116 kcal (2) G-P(sol) polarization free energy of solvation -75.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds