Wall clock time and date at job start Tue Mar 31 2020 20:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 N 1.46902 * 109.47257 * 240.00155 * 2 1 3 5 5 C 1.53003 * 109.47269 * 119.99730 * 2 1 3 6 6 H 1.08997 * 110.64479 * 303.31349 * 5 2 1 7 7 C 1.55163 * 110.71431 * 66.45551 * 5 2 1 8 8 C 1.54913 * 101.57946 * 154.04541 * 7 5 2 9 9 N 1.47427 * 104.82921 * 322.98287 * 8 7 5 10 10 S 1.65599 * 125.65116 * 204.08861 * 9 8 7 11 11 O 1.42105 * 106.40122 * 336.49641 * 10 9 8 12 12 O 1.42093 * 106.40801 * 203.56925 * 10 9 8 13 13 C 1.76206 * 107.21597 * 90.03005 * 10 9 8 14 14 C 1.38231 * 119.99843 * 90.00013 * 13 10 9 15 15 C 1.38236 * 120.00242 * 180.02562 * 14 13 10 16 16 C 1.38233 * 119.99565 * 359.95900 * 15 14 13 17 17 C 1.50700 * 119.99980 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46869 * 90.00014 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.38233 * 120.00375 * 0.27512 * 16 15 14 27 27 C 1.38234 * 119.99990 * 270.02508 * 13 10 9 28 28 C 1.47019 * 108.70399 * 24.36297 * 9 8 7 29 29 H 1.09001 * 109.46863 * 300.00131 * 1 2 3 30 30 H 1.09002 * 109.47186 * 59.99565 * 1 2 3 31 31 H 1.08994 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.00897 * 111.00183 * 176.04516 * 4 2 1 33 33 H 1.00903 * 110.99563 * 300.00068 * 4 2 1 34 34 H 1.08991 * 111.00469 * 35.96942 * 7 5 2 35 35 H 1.08997 * 111.00044 * 272.11653 * 7 5 2 36 36 H 1.09004 * 110.36277 * 204.15536 * 8 7 5 37 37 H 1.08987 * 110.46263 * 81.87119 * 8 7 5 38 38 H 1.08004 * 120.00009 * 0.02562 * 14 13 10 39 39 H 1.08000 * 120.00222 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.47210 * 330.00307 * 17 16 15 41 41 H 1.08994 * 109.47551 * 209.99960 * 17 16 15 42 42 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.00620 * 179.72269 * 26 16 15 44 44 H 1.08000 * 120.00297 * 0.02562 * 27 13 10 45 45 H 1.09001 * 109.88566 * 118.12269 * 28 9 8 46 46 H 1.09003 * 109.88388 * 239.29179 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7212 1.2493 6 1 1.6400 -0.2575 2.1509 7 6 1.6764 -2.2288 1.1996 8 6 2.7848 -2.8455 2.0889 9 7 3.9936 -2.0577 1.7859 10 16 5.5553 -2.5725 1.9812 11 8 5.5186 -3.6038 2.9582 12 8 6.3499 -1.4022 2.1159 13 6 6.0457 -3.3356 0.4706 14 6 6.6361 -2.5805 -0.5254 15 6 7.0203 -3.1789 -1.7108 16 6 6.8149 -4.5328 -1.8998 17 6 7.2332 -5.1852 -3.1922 18 6 8.6536 -5.6740 -3.0714 19 1 9.1987 -5.5274 -2.1506 20 6 9.2551 -6.3141 -4.1342 21 7 8.5912 -6.4931 -5.2552 22 14 11.0131 -6.9269 -3.9817 23 1 11.5342 -6.6044 -2.6291 24 1 11.0443 -8.3975 -4.1861 25 1 11.8584 -6.2664 -5.0087 26 6 6.2200 -5.2871 -0.9057 27 6 5.8395 -4.6893 0.2813 28 6 3.5828 -0.7368 1.2879 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.0262 -0.6500 -1.2559 33 1 1.6961 -1.6479 -1.2227 34 1 1.7349 -2.6114 0.1807 35 1 0.6892 -2.4068 1.6260 36 1 2.9400 -3.8929 1.8299 37 1 2.5245 -2.7506 3.1429 38 1 6.7972 -1.5228 -0.3775 39 1 7.4812 -2.5888 -2.4891 40 1 7.1662 -4.4603 -4.0035 41 1 6.5755 -6.0284 -3.4032 42 1 9.0145 -6.9431 -6.0031 43 1 6.0554 -6.3440 -1.0551 44 1 5.3774 -5.2792 1.0591 45 1 3.9466 0.0418 1.9584 46 1 3.9785 -0.5795 0.2845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886885033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:37 Heat of formation + Delta-G solvation = -57.159669 kcal Electronic energy + Delta-G solvation = -27525.842843 eV Core-core repulsion = 23734.633210 eV Total energy + Delta-G solvation = -3791.209633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.67596 -38.83948 -37.21931 -35.82805 -35.62793 -33.70470 -31.58815 -30.63295 -30.58123 -29.38182 -28.99891 -27.45680 -23.77235 -23.25585 -22.82735 -22.36906 -20.86813 -19.82786 -19.10807 -18.03041 -17.42047 -16.53827 -16.44940 -16.22967 -15.67524 -15.12251 -15.08078 -14.65115 -14.46535 -14.39645 -14.03021 -13.83756 -13.40911 -13.16455 -13.02041 -12.88813 -12.72757 -12.30110 -12.26941 -12.19768 -12.11554 -12.01213 -11.73912 -11.65475 -11.51613 -11.30527 -11.13260 -10.97918 -10.95398 -10.89934 -10.54677 -10.52268 -9.77791 -9.68120 -9.23891 -9.01952 -8.63378 -8.56297 -8.41443 -6.19233 -4.24248 0.36232 1.28805 1.75162 2.94838 3.21808 3.29958 3.35191 3.73274 3.90266 4.03233 4.18324 4.23131 4.35886 4.44526 4.46584 4.85070 4.90240 4.92728 5.02339 5.12936 5.16798 5.18874 5.19653 5.21349 5.40248 5.45083 5.51414 5.53712 5.68495 5.70744 5.73510 5.80019 5.86553 5.87390 5.90988 6.15638 6.20766 6.28705 6.48365 6.79969 6.87231 6.88005 7.16237 7.26297 7.39680 7.55977 7.76001 8.10893 8.80760 9.40917 10.90812 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.002952 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.875937 B = 9482.402946 C =10477.280871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.095 3.905 3 H 0.084 0.916 4 N -0.843 5.843 5 C -0.133 4.133 6 H 0.089 0.911 7 C -0.130 4.130 8 C 0.122 3.878 9 N -1.013 6.013 10 S 2.710 3.290 11 O -0.960 6.960 12 O -0.960 6.960 13 C -0.705 4.705 14 C -0.024 4.024 15 C -0.144 4.144 16 C 0.028 3.972 17 C 0.039 3.961 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.145 4.145 27 C -0.023 4.023 28 C 0.122 3.878 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.343 0.657 33 H 0.341 0.659 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.074 0.926 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.152 11.395 12.574 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 H 0.102 0.898 4 N -0.376 5.376 5 C -0.155 4.155 6 H 0.108 0.892 7 C -0.169 4.169 8 C -0.003 4.003 9 N -0.851 5.851 10 S 2.805 3.195 11 O -0.950 6.950 12 O -0.951 6.951 13 C -0.794 4.794 14 C -0.043 4.043 15 C -0.163 4.163 16 C 0.028 3.972 17 C 0.002 3.998 18 C -0.556 4.556 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.164 4.164 27 C -0.043 4.043 28 C -0.004 4.004 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.092 0.908 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.961 11.942 12.761 24.354 hybrid contribution 1.547 -1.364 -0.085 2.065 sum -15.413 10.578 12.675 22.586 Atomic orbital electron populations 1.21780 0.94073 1.02173 1.02054 1.21378 0.95752 0.97951 0.86675 0.89766 1.59074 1.16763 1.21810 1.39918 1.23134 0.94331 0.96864 1.01197 0.89236 1.22905 0.98642 0.94621 1.00752 1.21973 0.83628 0.95304 0.99376 1.58719 1.22092 1.23041 1.81208 1.01261 0.70968 0.73147 0.74132 1.93556 1.85726 1.58471 1.57275 1.93550 1.66450 1.48790 1.86273 1.30383 1.20977 1.05381 1.22680 1.20758 0.92749 0.98864 0.91937 1.21248 1.01988 0.95442 0.97630 1.21119 0.85981 0.92942 0.97194 1.18545 0.97084 0.96103 0.88031 1.21006 0.96816 1.37978 0.99757 0.92256 1.25006 0.98355 0.95658 0.95128 1.69957 1.37165 1.42281 1.03509 0.86427 0.84113 0.78558 0.78344 1.19576 1.20785 1.20764 1.21248 1.01186 1.00485 0.93475 1.20755 0.94595 0.92178 0.96767 1.21763 0.95081 0.84182 0.99352 0.92261 0.91779 0.92575 0.84197 0.84350 0.90369 0.89695 0.90418 0.91084 0.85385 0.85300 0.94673 0.94715 0.92661 0.85352 0.85428 0.90784 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.34 37.16 0.35 -0.46 16 2 C 0.09 0.60 3.27 -67.71 -0.22 0.38 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 N -0.84 -6.52 9.09 -4.66 -0.04 -6.56 16 5 C -0.13 -0.84 2.81 -88.77 -0.25 -1.09 16 6 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 7 C -0.13 -0.81 5.59 -24.58 -0.14 -0.94 16 8 C 0.12 1.02 6.98 -2.53 -0.02 1.00 16 9 N -1.01 -10.52 3.70 -111.41 -0.41 -10.93 16 10 S 2.71 38.33 5.94 -107.50 -0.64 37.69 16 11 O -0.96 -15.69 16.87 -57.17 -0.96 -16.65 16 12 O -0.96 -15.70 16.86 -57.17 -0.96 -16.66 16 13 C -0.70 -11.01 5.97 -39.59 -0.24 -11.25 16 14 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 15 C -0.14 -2.64 9.70 -39.58 -0.38 -3.02 16 16 C 0.03 0.57 5.07 -104.63 -0.53 0.04 16 17 C 0.04 0.95 5.11 -29.03 -0.15 0.80 16 18 C -0.52 -13.99 9.09 -34.44 -0.31 -14.30 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 C -0.15 -2.66 9.70 -39.58 -0.38 -3.04 16 27 C -0.02 -0.38 9.52 -39.58 -0.38 -0.75 16 28 C 0.12 1.04 6.49 -3.06 -0.02 1.02 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 7.48 -51.93 -0.39 -0.08 16 32 H 0.34 2.75 7.15 -39.29 -0.28 2.47 16 33 H 0.34 2.52 6.71 -39.29 -0.26 2.26 16 34 H 0.08 0.50 5.85 -51.93 -0.30 0.20 16 35 H 0.08 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.54 8.14 -51.94 -0.42 0.11 16 38 H 0.13 1.77 7.62 -52.48 -0.40 1.37 16 39 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 41 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.13 2.23 8.06 -52.48 -0.42 1.81 16 44 H 0.13 1.77 7.62 -52.49 -0.40 1.37 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.54 6.05 -51.93 -0.31 0.23 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -32.46 382.16 -11.65 -44.11 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.96 Total: 2.65 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: -3.15 Total: -30.79 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.28 Total: -42.17 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.93 Total: -33.31 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 38.33 SS G_CDS: -0.64 Total: 37.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.46 -11.65 -44.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.049 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds