Wall clock time and date at job start Tue Mar 31 2020 20:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47142 * 2 1 4 4 N 1.46902 * 109.47257 * 240.00155 * 2 1 3 5 5 C 1.53003 * 109.47269 * 119.99730 * 2 1 3 6 6 H 1.08997 * 110.64479 * 303.31349 * 5 2 1 7 7 C 1.55163 * 110.71431 * 66.45551 * 5 2 1 8 8 C 1.54913 * 101.57946 * 154.04541 * 7 5 2 9 9 N 1.47427 * 104.82921 * 322.98287 * 8 7 5 10 10 S 1.65599 * 125.65116 * 204.08861 * 9 8 7 11 11 O 1.42105 * 106.40122 * 336.49641 * 10 9 8 12 12 O 1.42093 * 106.40801 * 203.56925 * 10 9 8 13 13 C 1.76206 * 107.21597 * 90.03005 * 10 9 8 14 14 C 1.38231 * 119.99843 * 90.00013 * 13 10 9 15 15 C 1.38236 * 120.00242 * 180.02562 * 14 13 10 16 16 C 1.38233 * 119.99565 * 359.95900 * 15 14 13 17 17 C 1.50700 * 119.99980 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.46869 * 90.00014 * 17 16 15 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.38233 * 120.00375 * 0.27512 * 16 15 14 27 27 C 1.38234 * 119.99990 * 270.02508 * 13 10 9 28 28 C 1.47019 * 108.70399 * 24.36297 * 9 8 7 29 29 H 1.09001 * 109.46863 * 300.00131 * 1 2 3 30 30 H 1.09002 * 109.47186 * 59.99565 * 1 2 3 31 31 H 1.08994 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.00897 * 111.00183 * 176.04516 * 4 2 1 33 33 H 1.00903 * 110.99563 * 300.00068 * 4 2 1 34 34 H 1.08991 * 111.00469 * 35.96942 * 7 5 2 35 35 H 1.08997 * 111.00044 * 272.11653 * 7 5 2 36 36 H 1.09004 * 110.36277 * 204.15536 * 8 7 5 37 37 H 1.08987 * 110.46263 * 81.87119 * 8 7 5 38 38 H 1.08004 * 120.00009 * 0.02562 * 14 13 10 39 39 H 1.08000 * 120.00222 * 179.97438 * 15 14 13 40 40 H 1.09004 * 109.47210 * 330.00307 * 17 16 15 41 41 H 1.08994 * 109.47551 * 209.99960 * 17 16 15 42 42 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 43 43 H 1.08005 * 120.00620 * 179.72269 * 26 16 15 44 44 H 1.08000 * 120.00297 * 0.02562 * 27 13 10 45 45 H 1.09001 * 109.88566 * 118.12269 * 28 9 8 46 46 H 1.09003 * 109.88388 * 239.29179 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7212 1.2493 6 1 1.6400 -0.2575 2.1509 7 6 1.6764 -2.2288 1.1996 8 6 2.7848 -2.8455 2.0889 9 7 3.9936 -2.0577 1.7859 10 16 5.5553 -2.5725 1.9812 11 8 5.5186 -3.6038 2.9582 12 8 6.3499 -1.4022 2.1159 13 6 6.0457 -3.3356 0.4706 14 6 6.6361 -2.5805 -0.5254 15 6 7.0203 -3.1789 -1.7108 16 6 6.8149 -4.5328 -1.8998 17 6 7.2332 -5.1852 -3.1922 18 6 8.6536 -5.6740 -3.0714 19 1 9.1987 -5.5274 -2.1506 20 6 9.2551 -6.3141 -4.1342 21 7 8.5912 -6.4931 -5.2552 22 14 11.0131 -6.9269 -3.9817 23 1 11.5342 -6.6044 -2.6291 24 1 11.0443 -8.3975 -4.1861 25 1 11.8584 -6.2664 -5.0087 26 6 6.2200 -5.2871 -0.9057 27 6 5.8395 -4.6893 0.2813 28 6 3.5828 -0.7368 1.2879 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.0262 -0.6500 -1.2559 33 1 1.6961 -1.6479 -1.2227 34 1 1.7349 -2.6114 0.1807 35 1 0.6892 -2.4068 1.6260 36 1 2.9400 -3.8929 1.8299 37 1 2.5245 -2.7506 3.1429 38 1 6.7972 -1.5228 -0.3775 39 1 7.4812 -2.5888 -2.4891 40 1 7.1662 -4.4603 -4.0035 41 1 6.5755 -6.0284 -3.4032 42 1 9.0145 -6.9431 -6.0031 43 1 6.0554 -6.3440 -1.0551 44 1 5.3774 -5.2792 1.0591 45 1 3.9466 0.0418 1.9584 46 1 3.9785 -0.5795 0.2845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886885033.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:36 Heat of formation + Delta-G solvation = -79.122341 kcal Electronic energy + Delta-G solvation = -27526.795215 eV Core-core repulsion = 23734.633210 eV Total energy + Delta-G solvation = -3792.162006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.29234 -40.24833 -38.44032 -37.05371 -36.25733 -35.61624 -33.34426 -31.99935 -31.23641 -29.96210 -29.54459 -29.26391 -25.61758 -23.89089 -23.74128 -23.47884 -22.42744 -20.37893 -20.13781 -19.12521 -18.62150 -18.45874 -17.31673 -16.90158 -16.80944 -16.69219 -16.01296 -15.94796 -15.68177 -15.31394 -15.07075 -14.76110 -14.62863 -14.49786 -14.11741 -13.94163 -13.69508 -13.44864 -13.42470 -13.40132 -13.30813 -13.24504 -12.78574 -12.70459 -12.70314 -12.67187 -12.39907 -12.17411 -12.07571 -11.86868 -11.67071 -11.62575 -11.46607 -11.39812 -10.67240 -10.11158 -9.99894 -9.92649 -9.57574 -8.28762 -6.41427 -0.76675 -0.09944 0.36267 1.35976 1.37608 1.50118 1.91034 2.33412 2.53889 2.75533 3.03976 3.05784 3.51285 3.63314 3.71406 3.85028 3.91726 3.93994 4.13222 4.28908 4.37349 4.39422 4.42723 4.44531 4.52101 4.57502 4.71471 4.78098 4.85667 4.87880 4.92787 5.00051 5.06688 5.06758 5.11481 5.21473 5.24559 5.26867 5.30370 5.32038 5.42932 5.47599 5.65665 5.83744 5.89201 6.07949 6.34609 6.58999 6.70512 7.27791 8.81485 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.002952 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.875937 B = 9482.402946 C =10477.280871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.097 3.903 3 H 0.084 0.916 4 N -0.854 5.854 5 C -0.122 4.122 6 H 0.105 0.895 7 C -0.124 4.124 8 C 0.110 3.890 9 N -1.007 6.007 10 S 2.734 3.266 11 O -0.979 6.979 12 O -0.981 6.981 13 C -0.701 4.701 14 C -0.019 4.019 15 C -0.152 4.152 16 C -0.001 4.001 17 C 0.049 3.951 18 C -0.534 4.534 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.153 4.153 27 C -0.019 4.019 28 C 0.111 3.889 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.340 0.660 33 H 0.342 0.658 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.130 0.870 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.268 0.732 43 H 0.130 0.870 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.151 12.222 14.486 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.016 4.016 3 H 0.102 0.898 4 N -0.387 5.387 5 C -0.144 4.144 6 H 0.123 0.877 7 C -0.163 4.163 8 C -0.014 4.014 9 N -0.847 5.847 10 S 2.827 3.173 11 O -0.970 6.970 12 O -0.971 6.971 13 C -0.788 4.788 14 C -0.038 4.038 15 C -0.171 4.171 16 C -0.001 4.001 17 C 0.012 3.988 18 C -0.572 4.572 19 H 0.071 0.929 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.172 4.172 27 C -0.038 4.038 28 C -0.014 4.014 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.094 0.906 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.148 0.852 44 H 0.171 0.829 45 H 0.095 0.905 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.955 12.759 14.659 26.459 hybrid contribution 1.733 -1.536 -0.609 2.394 sum -16.222 11.223 14.049 24.218 Atomic orbital electron populations 1.21757 0.93301 1.02456 1.02250 1.21407 0.96258 0.97749 0.86160 0.89804 1.59105 1.16572 1.22068 1.40910 1.23084 0.92463 0.97081 1.01759 0.87685 1.22916 0.98932 0.94108 1.00363 1.22289 0.83150 0.95340 1.00649 1.58419 1.21299 1.24021 1.80938 1.00483 0.71503 0.72234 0.73110 1.93528 1.86465 1.59336 1.57663 1.93521 1.68061 1.49253 1.86291 1.30840 1.19501 1.05343 1.23144 1.20982 0.91776 1.00067 0.90970 1.21295 1.02353 0.94699 0.98773 1.20811 0.88895 0.94110 0.96312 1.18263 0.95787 0.94981 0.89800 1.21313 0.98240 1.38080 0.99528 0.92914 1.25853 1.02480 0.95790 0.94764 1.70059 1.38962 1.43094 1.04248 0.85417 0.79157 0.78223 0.78397 1.19284 1.20005 1.20005 1.21300 1.01335 1.00630 0.93942 1.20992 0.93856 0.92643 0.96336 1.22024 0.96878 0.83076 0.99460 0.90882 0.92799 0.92232 0.84586 0.84222 0.90627 0.87485 0.90310 0.89876 0.82958 0.85205 0.96785 0.96793 0.92349 0.85201 0.82909 0.90547 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.34 71.98 0.67 -0.56 16 2 C 0.10 1.01 3.27 44.92 0.15 1.16 16 3 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 4 N -0.85 -12.01 9.09 -168.67 -1.53 -13.54 16 5 C -0.12 -1.18 2.81 -9.60 -0.03 -1.21 16 6 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 7 C -0.12 -1.16 5.59 31.99 0.18 -0.98 16 8 C 0.11 1.52 6.98 86.86 0.61 2.13 16 9 N -1.01 -18.58 3.70 -506.40 -1.87 -20.45 16 10 S 2.73 72.12 5.94 -56.49 -0.34 71.79 16 11 O -0.98 -30.07 16.87 -128.00 -2.16 -32.23 16 12 O -0.98 -30.29 16.86 -128.00 -2.16 -32.45 16 13 C -0.70 -20.91 5.97 22.27 0.13 -20.77 16 14 C -0.02 -0.59 9.52 22.27 0.21 -0.37 16 15 C -0.15 -5.64 9.70 22.27 0.22 -5.42 16 16 C 0.00 -0.04 5.07 -19.87 -0.10 -0.14 16 17 C 0.05 2.48 5.11 29.10 0.15 2.63 16 18 C -0.53 -29.72 9.09 25.60 0.23 -29.49 16 19 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.92 -54.02 13.29 21.45 0.28 -53.73 16 22 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.15 -5.66 9.70 22.27 0.22 -5.44 16 27 C -0.02 -0.59 9.52 22.27 0.21 -0.38 16 28 C 0.11 1.64 6.49 86.73 0.56 2.20 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.49 7.48 -2.39 -0.02 0.47 16 32 H 0.34 5.07 7.15 -89.70 -0.64 4.43 16 33 H 0.34 4.56 6.71 -89.69 -0.60 3.96 16 34 H 0.08 0.78 5.85 -2.39 -0.01 0.77 16 35 H 0.11 0.59 8.12 -2.39 -0.02 0.57 16 36 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.15 3.96 7.62 -2.91 -0.02 3.93 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.01 0.75 8.09 -2.38 -0.02 0.73 16 41 H 0.01 0.74 8.08 -2.39 -0.02 0.72 16 42 H 0.27 14.63 8.31 -92.70 -0.77 13.85 16 43 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 44 H 0.15 3.94 7.62 -2.91 -0.02 3.91 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 0.98 6.05 -2.39 -0.01 0.96 16 Total: -1.00 -70.15 382.16 -2.12 -72.27 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -0.25 Total: 18.30 kcal Atomic # 6 Polarization: -59.51 SS G_CDS: 3.87 Total: -55.63 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.12 Total: -87.73 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -4.32 Total: -64.68 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 72.12 SS G_CDS: -0.34 Total: 71.79 kcal Total: -70.15 -2.12 -72.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886885033.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.850 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds