Wall clock time and date at job start Tue Mar 31 2020 21:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46635 * 2 1 4 4 C 1.52990 * 109.47358 * 120.00324 * 2 1 3 5 5 S 1.81404 * 109.47489 * 185.00213 * 4 2 1 6 6 C 1.81395 * 103.00360 * 179.97438 * 5 4 2 7 7 O 1.42103 * 109.46591 * 296.39130 * 5 4 2 8 8 N 1.46500 * 109.47206 * 240.00371 * 2 1 3 9 9 C 1.46499 * 120.00227 * 299.99846 * 8 2 1 10 10 C 1.34780 * 120.00090 * 119.99476 * 8 2 1 11 11 O 1.21589 * 119.99669 * 0.02562 * 10 8 2 12 12 N 1.34771 * 119.99982 * 180.02562 * 10 8 2 13 13 C 1.39942 * 120.00098 * 174.71206 * 12 10 8 14 14 C 1.38868 * 120.06820 * 326.56034 * 13 12 10 15 15 C 1.38120 * 119.93092 * 179.76808 * 14 13 12 16 16 C 1.38280 * 120.06891 * 0.51218 * 15 14 13 17 17 C 1.50700 * 119.93254 * 179.72151 * 16 15 14 18 18 C 1.50698 * 109.47013 * 270.02163 * 17 16 15 19 19 H 1.08001 * 119.99765 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99743 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99542 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00262 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47110 * 89.99784 * 22 20 18 24 24 H 1.48500 * 109.47005 * 210.00072 * 22 20 18 25 25 H 1.48501 * 109.46977 * 329.99919 * 22 20 18 26 26 C 1.38286 * 120.13967 * 359.73784 * 16 15 14 27 27 C 1.38119 * 120.07052 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.47104 * 60.00003 * 1 2 3 29 29 H 1.09006 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47143 * 299.99597 * 1 2 3 31 31 H 1.08997 * 109.47191 * 305.00122 * 4 2 1 32 32 H 1.09007 * 109.47224 * 64.99971 * 4 2 1 33 33 H 1.09004 * 109.46805 * 59.99573 * 6 5 4 34 34 H 1.08994 * 109.47526 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47253 * 300.00409 * 6 5 4 36 36 H 1.09009 * 109.46885 * 89.99830 * 9 8 2 37 37 H 1.09001 * 109.46887 * 330.00588 * 9 8 2 38 38 H 1.08995 * 109.47450 * 210.00001 * 9 8 2 39 39 H 0.97003 * 120.00129 * 354.70939 * 12 10 8 40 40 H 1.07999 * 120.03327 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.96852 * 180.25021 * 15 14 13 42 42 H 1.08994 * 109.46566 * 30.01766 * 17 16 15 43 43 H 1.09003 * 109.47236 * 150.01770 * 17 16 15 44 44 H 0.96996 * 119.99437 * 179.97438 * 21 20 18 45 45 H 1.07999 * 119.96619 * 179.97438 * 26 16 15 46 46 H 1.07999 * 120.03200 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 3.8479 -0.5932 1.3256 6 6 4.2567 -1.4917 2.8475 7 8 4.4178 -1.2651 0.2106 8 7 2.0184 -0.6905 -1.1962 9 6 1.6645 -2.0931 -1.4282 10 6 2.7932 -0.0354 -2.0834 11 8 3.0872 1.1285 -1.8907 12 7 3.2420 -0.6706 -3.1841 13 6 3.9528 0.0376 -4.1596 14 6 3.6474 1.3681 -4.4144 15 6 4.3540 2.0657 -5.3745 16 6 5.3575 1.4376 -6.0891 17 6 6.1223 2.1999 -7.1403 18 6 5.4289 2.0544 -8.4704 19 1 4.5250 1.4682 -8.5468 20 6 5.9484 2.6697 -9.5895 21 7 5.3434 2.5423 -10.7504 22 14 7.5113 3.6842 -9.4571 23 1 8.6892 2.8118 -9.6947 24 1 7.4852 4.7682 -10.4717 25 1 7.6017 4.2790 -8.0994 26 6 5.6605 0.1113 -5.8414 27 6 4.9609 -0.5904 -4.8792 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 2.1368 32 1 1.7517 -1.7716 1.2054 33 1 3.9128 -2.5227 2.7642 34 1 5.3362 -1.4801 2.9975 35 1 3.7665 -1.0126 3.6951 36 1 0.7376 -2.1442 -1.9995 37 1 1.5295 -2.5968 -0.4710 38 1 2.4629 -2.5817 -1.9865 39 1 3.0723 -1.6186 -3.3001 40 1 2.8610 1.8580 -3.8595 41 1 4.1198 3.1016 -5.5703 42 1 6.1645 3.2539 -6.8660 43 1 7.1347 1.8024 -7.2129 44 1 5.7087 2.9755 -11.5377 45 1 6.4445 -0.3767 -6.4014 46 1 5.1978 -1.6264 -4.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932570830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:37 Heat of formation + Delta-G solvation = -26.072978 kcal Electronic energy + Delta-G solvation = -27035.191771 eV Core-core repulsion = 23245.330158 eV Total energy + Delta-G solvation = -3789.861613 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68386 -38.60029 -36.72417 -35.84174 -34.87327 -33.13536 -32.24795 -30.42990 -30.21171 -29.37445 -27.76642 -27.33098 -26.75125 -23.37260 -22.27407 -21.80078 -20.16485 -19.51199 -18.59998 -17.76650 -17.04310 -16.69260 -16.26412 -15.97230 -15.64052 -14.91499 -14.85076 -14.62549 -14.32468 -14.04561 -13.96050 -13.55255 -13.45028 -13.31704 -13.18059 -12.96649 -12.84756 -12.70099 -12.50062 -12.35841 -12.32743 -12.15466 -11.93056 -11.55480 -11.45135 -11.35115 -10.75538 -10.38836 -10.38146 -10.19284 -10.03047 -9.83993 -9.45424 -9.23016 -8.90329 -8.51579 -8.50374 -8.20470 -7.24211 -6.00881 -3.99110 1.19728 2.02609 2.14421 2.31762 2.50164 3.25954 3.34386 3.41804 3.46193 3.53708 3.83640 4.28855 4.48103 4.57988 4.59423 4.70160 4.73187 4.77668 4.87039 5.02847 5.13919 5.21345 5.27766 5.31379 5.37379 5.49690 5.50701 5.59005 5.66560 5.76858 5.97806 6.07195 6.12409 6.25025 6.30651 6.62617 6.71097 6.97525 7.05152 7.08143 7.14796 7.21456 7.70815 7.72681 7.81724 7.88362 8.57130 8.58633 9.05194 9.59982 11.12166 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.002343 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.271094 B =11946.674796 C =12385.921874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 H 0.115 0.885 4 C -0.468 4.468 5 S 1.251 4.749 6 C -0.498 4.498 7 O -0.827 6.827 8 N -0.628 5.628 9 C 0.083 3.917 10 C 0.717 3.283 11 O -0.575 6.575 12 N -0.677 5.677 13 C 0.132 3.868 14 C -0.117 4.117 15 C -0.104 4.104 16 C -0.043 4.043 17 C 0.015 3.985 18 C -0.509 4.509 19 H 0.074 0.926 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.878 3.122 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.104 4.104 27 C -0.146 4.146 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.400 0.600 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.263 0.737 45 H 0.121 0.879 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.201 -8.435 30.788 33.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.069 3.931 3 H 0.133 0.867 4 C -0.605 4.605 5 S 1.447 4.553 6 C -0.655 4.655 7 O -0.822 6.822 8 N -0.366 5.366 9 C -0.061 4.061 10 C 0.420 3.580 11 O -0.452 6.452 12 N -0.324 5.324 13 C 0.039 3.961 14 C -0.138 4.138 15 C -0.122 4.122 16 C -0.044 4.044 17 C -0.022 4.022 18 C -0.547 4.547 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.541 5.541 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.123 4.123 27 C -0.166 4.166 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.237 0.763 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.139 0.861 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.390 -7.139 30.143 32.093 hybrid contribution -0.071 -2.515 -0.081 2.517 sum -8.461 -9.653 30.062 32.688 Atomic orbital electron populations 1.22122 0.94138 1.02306 1.02880 1.20468 0.94496 0.97428 0.80726 0.86720 1.28225 1.22151 1.06202 1.03957 1.71090 0.84945 1.14104 0.85129 1.27756 1.08591 1.10594 1.18566 1.93186 1.69525 1.75567 1.43940 1.47033 1.53674 1.12240 1.23696 1.21623 1.00495 0.82089 1.01907 1.15658 0.78270 0.84623 0.79467 1.90904 1.62168 1.15229 1.76904 1.42572 1.57611 1.12501 1.19738 1.17329 0.94459 0.92768 0.91584 1.20981 1.01040 0.93322 0.98411 1.20933 0.95907 1.00072 0.95323 1.20250 0.95504 0.93972 0.94664 1.18789 0.95058 0.95088 0.93271 1.20965 1.11549 1.32142 0.90084 0.90833 1.25010 0.97117 0.96079 0.95189 1.69910 1.40152 1.44530 0.99488 0.86798 0.83970 0.80436 0.78291 1.20240 1.21344 1.18835 1.20814 1.00033 0.94254 0.97173 1.20700 0.96282 0.99887 0.99743 0.91692 0.92550 0.91050 0.85466 0.89389 0.90570 0.87847 0.87241 0.92507 0.91485 0.91376 0.76332 0.85614 0.86083 0.95410 0.95922 0.92708 0.86058 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 9.19 37.16 0.34 -0.62 16 2 C 0.17 1.40 2.64 -67.93 -0.18 1.22 16 3 H 0.11 1.02 6.90 -51.93 -0.36 0.67 16 4 C -0.47 -2.48 5.33 37.15 0.20 -2.29 16 5 S 1.25 8.83 13.73 -107.50 -1.48 7.36 16 6 C -0.50 -2.53 10.74 101.05 1.09 -1.44 16 7 O -0.83 -11.44 16.70 -35.23 -0.59 -12.03 16 8 N -0.63 -6.86 1.81 -179.67 -0.33 -7.19 16 9 C 0.08 0.69 9.31 59.85 0.56 1.25 16 10 C 0.72 10.86 7.41 -86.92 -0.64 10.22 16 11 O -0.57 -10.27 13.36 5.29 0.07 -10.20 16 12 N -0.68 -10.32 5.22 -14.22 -0.07 -10.39 16 13 C 0.13 2.40 6.28 -83.69 -0.53 1.88 16 14 C -0.12 -2.30 8.66 -39.39 -0.34 -2.64 16 15 C -0.10 -2.18 9.69 -39.61 -0.38 -2.56 16 16 C -0.04 -0.97 5.07 -104.59 -0.53 -1.50 16 17 C 0.02 0.38 4.17 -29.04 -0.12 0.25 16 18 C -0.51 -14.81 9.65 -34.44 -0.33 -15.14 16 19 H 0.07 2.33 7.98 -52.49 -0.42 1.92 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 22 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 26 C -0.10 -2.11 9.69 -39.61 -0.38 -2.49 16 27 C -0.15 -2.63 9.96 -39.39 -0.39 -3.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.13 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.49 6.48 -51.92 -0.34 0.15 16 33 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 34 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.07 0.46 6.34 -51.93 -0.33 0.13 16 38 H 0.07 0.60 6.29 -51.93 -0.33 0.27 16 39 H 0.40 4.97 6.51 -40.82 -0.27 4.70 16 40 H 0.13 2.42 6.42 -52.49 -0.34 2.08 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 43 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -39.00 384.98 -9.16 -48.17 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.93 Total: 3.58 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -1.75 Total: -14.99 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.37 Total: -44.90 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.52 Total: -22.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Atomic # 16 Polarization: 8.83 SS G_CDS: -1.48 Total: 7.36 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.00 -9.16 -48.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932570830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.094 kcal (2) G-P(sol) polarization free energy of solvation -39.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds