Wall clock time and date at job start Tue Mar 31 2020 21:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46635 * 2 1 4 4 C 1.52990 * 109.47358 * 120.00324 * 2 1 3 5 5 S 1.81404 * 109.47489 * 185.00213 * 4 2 1 6 6 C 1.81395 * 103.00360 * 179.97438 * 5 4 2 7 7 O 1.42103 * 109.46591 * 296.39130 * 5 4 2 8 8 N 1.46500 * 109.47206 * 240.00371 * 2 1 3 9 9 C 1.46499 * 120.00227 * 299.99846 * 8 2 1 10 10 C 1.34780 * 120.00090 * 119.99476 * 8 2 1 11 11 O 1.21589 * 119.99669 * 0.02562 * 10 8 2 12 12 N 1.34771 * 119.99982 * 180.02562 * 10 8 2 13 13 C 1.39942 * 120.00098 * 174.71206 * 12 10 8 14 14 C 1.38868 * 120.06820 * 326.56034 * 13 12 10 15 15 C 1.38120 * 119.93092 * 179.76808 * 14 13 12 16 16 C 1.38280 * 120.06891 * 0.51218 * 15 14 13 17 17 C 1.50700 * 119.93254 * 179.72151 * 16 15 14 18 18 C 1.50698 * 109.47013 * 270.02163 * 17 16 15 19 19 H 1.08001 * 119.99765 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99743 * 179.97438 * 18 17 16 21 21 N 1.31522 * 119.99542 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00262 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47110 * 89.99784 * 22 20 18 24 24 H 1.48500 * 109.47005 * 210.00072 * 22 20 18 25 25 H 1.48501 * 109.46977 * 329.99919 * 22 20 18 26 26 C 1.38286 * 120.13967 * 359.73784 * 16 15 14 27 27 C 1.38119 * 120.07052 * 0.02562 * 26 16 15 28 28 H 1.09002 * 109.47104 * 60.00003 * 1 2 3 29 29 H 1.09006 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47143 * 299.99597 * 1 2 3 31 31 H 1.08997 * 109.47191 * 305.00122 * 4 2 1 32 32 H 1.09007 * 109.47224 * 64.99971 * 4 2 1 33 33 H 1.09004 * 109.46805 * 59.99573 * 6 5 4 34 34 H 1.08994 * 109.47526 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47253 * 300.00409 * 6 5 4 36 36 H 1.09009 * 109.46885 * 89.99830 * 9 8 2 37 37 H 1.09001 * 109.46887 * 330.00588 * 9 8 2 38 38 H 1.08995 * 109.47450 * 210.00001 * 9 8 2 39 39 H 0.97003 * 120.00129 * 354.70939 * 12 10 8 40 40 H 1.07999 * 120.03327 * 0.02562 * 14 13 12 41 41 H 1.07994 * 119.96852 * 180.25021 * 15 14 13 42 42 H 1.08994 * 109.46566 * 30.01766 * 17 16 15 43 43 H 1.09003 * 109.47236 * 150.01770 * 17 16 15 44 44 H 0.96996 * 119.99437 * 179.97438 * 21 20 18 45 45 H 1.07999 * 119.96619 * 179.97438 * 26 16 15 46 46 H 1.07999 * 120.03200 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 16 3.8479 -0.5932 1.3256 6 6 4.2567 -1.4917 2.8475 7 8 4.4178 -1.2651 0.2106 8 7 2.0184 -0.6905 -1.1962 9 6 1.6645 -2.0931 -1.4282 10 6 2.7932 -0.0354 -2.0834 11 8 3.0872 1.1285 -1.8907 12 7 3.2420 -0.6706 -3.1841 13 6 3.9528 0.0376 -4.1596 14 6 3.6474 1.3681 -4.4144 15 6 4.3540 2.0657 -5.3745 16 6 5.3575 1.4376 -6.0891 17 6 6.1223 2.1999 -7.1403 18 6 5.4289 2.0544 -8.4704 19 1 4.5250 1.4682 -8.5468 20 6 5.9484 2.6697 -9.5895 21 7 5.3434 2.5423 -10.7504 22 14 7.5113 3.6842 -9.4571 23 1 8.6892 2.8118 -9.6947 24 1 7.4852 4.7682 -10.4717 25 1 7.6017 4.2790 -8.0994 26 6 5.6605 0.1113 -5.8414 27 6 4.9609 -0.5904 -4.8792 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2618 2.1368 32 1 1.7517 -1.7716 1.2054 33 1 3.9128 -2.5227 2.7642 34 1 5.3362 -1.4801 2.9975 35 1 3.7665 -1.0126 3.6951 36 1 0.7376 -2.1442 -1.9995 37 1 1.5295 -2.5968 -0.4710 38 1 2.4629 -2.5817 -1.9865 39 1 3.0723 -1.6186 -3.3001 40 1 2.8610 1.8580 -3.8595 41 1 4.1198 3.1016 -5.5703 42 1 6.1645 3.2539 -6.8660 43 1 7.1347 1.8024 -7.2129 44 1 5.7087 2.9755 -11.5377 45 1 6.4445 -0.3767 -6.4014 46 1 5.1978 -1.6264 -4.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932570830.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:36 Heat of formation + Delta-G solvation = -52.989895 kcal Electronic energy + Delta-G solvation = -27036.358976 eV Core-core repulsion = 23245.330158 eV Total energy + Delta-G solvation = -3791.028818 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82830 -39.98358 -37.71904 -36.59660 -36.27247 -34.99510 -33.43744 -32.05600 -31.77799 -29.81356 -28.71988 -28.23020 -27.90069 -24.99463 -23.85042 -23.04690 -21.65867 -20.57057 -19.64049 -18.94060 -18.46498 -18.18511 -17.23423 -16.88497 -16.63056 -16.32297 -15.91890 -15.85378 -15.54692 -15.19580 -14.94478 -14.86822 -14.43637 -14.36502 -14.27806 -14.05143 -13.90709 -13.72572 -13.52518 -13.49471 -13.35786 -13.22573 -12.99992 -12.85165 -12.52382 -12.49338 -12.13785 -11.98409 -11.90889 -11.74071 -11.59864 -11.20887 -11.01154 -10.91622 -10.76356 -9.78051 -9.75582 -9.06512 -8.76871 -8.27608 -6.32234 0.48425 0.57260 0.68279 1.38183 1.40164 1.51840 1.52749 1.86188 2.08625 2.37713 2.80770 2.98398 3.01402 3.06449 3.72799 4.01677 4.04961 4.09242 4.14010 4.27422 4.29897 4.31575 4.47428 4.51630 4.56473 4.58645 4.62434 4.66938 4.72948 4.82322 4.87436 5.01756 5.05436 5.09695 5.13864 5.24246 5.30473 5.37187 5.45407 5.55364 5.57801 5.66570 5.86783 6.00834 6.17893 6.31849 6.73534 6.78135 7.30811 7.44292 8.88854 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.002343 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.271094 B =11946.674796 C =12385.921874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.102 0.898 4 C -0.451 4.451 5 S 1.250 4.750 6 C -0.484 4.484 7 O -0.903 6.903 8 N -0.622 5.622 9 C 0.075 3.925 10 C 0.709 3.291 11 O -0.609 6.609 12 N -0.675 5.675 13 C 0.141 3.859 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.076 4.076 17 C 0.023 3.977 18 C -0.517 4.517 19 H 0.028 0.972 20 C 0.006 3.994 21 N -0.949 5.949 22 Si 0.951 3.049 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.247 1.247 26 C -0.109 4.109 27 C -0.141 4.141 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.173 0.827 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.414 0.586 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.029 0.971 43 H 0.032 0.968 44 H 0.267 0.733 45 H 0.130 0.870 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.498 -9.226 34.206 36.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.056 3.944 3 H 0.120 0.880 4 C -0.589 4.589 5 S 1.451 4.549 6 C -0.643 4.643 7 O -0.898 6.898 8 N -0.358 5.358 9 C -0.068 4.068 10 C 0.411 3.589 11 O -0.489 6.489 12 N -0.323 5.323 13 C 0.046 3.954 14 C -0.145 4.145 15 C -0.132 4.132 16 C -0.077 4.077 17 C -0.014 4.014 18 C -0.555 4.555 19 H 0.046 0.954 20 C -0.190 4.190 21 N -0.590 5.590 22 Si 0.774 3.226 23 H -0.189 1.189 24 H -0.208 1.208 25 H -0.171 1.171 26 C -0.128 4.128 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.191 0.809 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.164 0.836 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.253 0.747 40 H 0.144 0.856 41 H 0.138 0.862 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.710 -7.974 33.599 35.614 hybrid contribution -0.183 -2.380 -0.946 2.568 sum -8.894 -10.354 32.652 35.390 Atomic orbital electron populations 1.22087 0.92258 1.03092 1.03320 1.20807 0.95910 0.97048 0.80643 0.88001 1.28071 1.19784 1.06686 1.04396 1.70232 0.85916 1.14186 0.84605 1.27616 1.08821 1.10057 1.17791 1.93094 1.72180 1.77260 1.47291 1.47184 1.52117 1.13087 1.23453 1.21831 1.00926 0.80688 1.03309 1.15910 0.78641 0.84462 0.79876 1.90871 1.63508 1.16787 1.77709 1.42525 1.57347 1.13093 1.19378 1.17456 0.94020 0.92449 0.91448 1.21004 1.01104 0.94148 0.98195 1.20974 0.96059 1.00304 0.95839 1.20156 0.96887 0.95127 0.95529 1.18632 0.95325 0.95679 0.91806 1.21162 1.10376 1.31384 0.92571 0.95373 1.25988 1.01100 0.97419 0.94528 1.70064 1.42364 1.46041 1.00530 0.85641 0.79132 0.78719 0.79106 1.18865 1.20794 1.17086 1.20973 1.00520 0.93600 0.97671 1.20950 0.95401 1.01189 0.98627 0.93570 0.91514 0.88365 0.80947 0.88836 0.91295 0.88222 0.83613 0.90882 0.89509 0.91977 0.74726 0.85580 0.86230 0.95250 0.94975 0.92393 0.85204 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 2 C 0.16 2.25 2.64 44.99 0.12 2.37 16 3 H 0.10 1.73 6.90 -2.39 -0.02 1.71 16 4 C -0.45 -3.28 5.33 71.98 0.38 -2.90 16 5 S 1.25 15.87 13.73 -56.49 -0.78 15.10 16 6 C -0.48 -3.59 10.74 113.37 1.22 -2.37 16 7 O -0.90 -24.98 16.70 -148.98 -2.49 -27.47 16 8 N -0.62 -12.82 1.81 -840.62 -1.52 -14.34 16 9 C 0.08 1.12 9.31 127.77 1.19 2.31 16 10 C 0.71 21.33 7.41 179.06 1.33 22.65 16 11 O -0.61 -22.10 13.36 -4.00 -0.05 -22.15 16 12 N -0.67 -20.27 5.22 -317.18 -1.66 -21.93 16 13 C 0.14 5.13 6.28 38.15 0.24 5.37 16 14 C -0.12 -4.97 8.66 22.39 0.19 -4.77 16 15 C -0.11 -4.91 9.69 22.25 0.22 -4.70 16 16 C -0.08 -3.49 5.07 -19.84 -0.10 -3.59 16 17 C 0.02 1.15 4.17 29.10 0.12 1.27 16 18 C -0.52 -31.09 9.65 25.60 0.25 -30.84 16 19 H 0.03 1.88 7.98 -2.91 -0.02 1.86 16 20 C 0.01 0.38 5.47 84.65 0.46 0.85 16 21 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 22 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 23 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 25 H -0.25 -11.04 6.54 99.48 0.65 -10.38 16 26 C -0.11 -4.42 9.69 22.25 0.22 -4.21 16 27 C -0.14 -5.00 9.96 22.39 0.22 -4.77 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.51 7.67 -2.38 -0.02 0.49 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.09 0.67 6.48 -2.39 -0.02 0.65 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.09 0.95 6.34 -2.39 -0.02 0.93 16 38 H 0.06 1.00 6.29 -2.39 -0.02 0.99 16 39 H 0.41 9.89 6.51 -92.71 -0.60 9.28 16 40 H 0.13 5.00 6.42 -2.91 -0.02 4.98 16 41 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 42 H 0.03 1.45 7.14 -2.39 -0.02 1.43 16 43 H 0.03 1.54 7.51 -2.39 -0.02 1.52 16 44 H 0.27 15.90 8.31 -92.71 -0.77 15.12 16 45 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 46 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -88.99 384.98 2.73 -86.25 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.33 Total: 22.01 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 6.72 Total: -24.09 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -2.88 Total: -96.82 kcal Atomic # 8 Polarization: -47.08 SS G_CDS: -2.54 Total: -49.62 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Atomic # 16 Polarization: 15.87 SS G_CDS: -0.78 Total: 15.10 kcal Total: -88.99 2.73 -86.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932570830.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.265 kcal (2) G-P(sol) polarization free energy of solvation -88.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds