Wall clock time and date at job start Tue Mar 31 2020 21:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46495 * 2 1 4 4 C 1.52995 * 109.47045 * 120.00165 * 2 1 3 5 5 S 1.81401 * 109.46764 * 185.00279 * 4 2 1 6 6 C 1.81409 * 102.99940 * 180.02562 * 5 4 2 7 7 O 1.42092 * 109.47220 * 63.61409 * 5 4 2 8 8 N 1.46493 * 109.46942 * 240.00298 * 2 1 3 9 9 C 1.46506 * 120.00242 * 299.99777 * 8 2 1 10 10 C 1.34775 * 120.00166 * 119.99955 * 8 2 1 11 11 O 1.21596 * 119.99782 * 359.97438 * 10 8 2 12 12 N 1.34771 * 120.00378 * 179.97438 * 10 8 2 13 13 C 1.39942 * 120.00332 * 175.41195 * 12 10 8 14 14 C 1.38867 * 120.07135 * 214.81191 * 13 12 10 15 15 C 1.38116 * 119.92926 * 179.76802 * 14 13 12 16 16 C 1.38279 * 120.06956 * 0.50541 * 15 14 13 17 17 C 1.50702 * 119.92853 * 179.72749 * 16 15 14 18 18 C 1.50701 * 109.47058 * 270.02031 * 17 16 15 19 19 H 1.08010 * 119.99660 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00421 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99675 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00248 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47010 * 60.00263 * 22 20 18 24 24 H 1.48495 * 109.46849 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46867 * 300.00155 * 22 20 18 26 26 C 1.38280 * 120.13944 * 359.74734 * 16 15 14 27 27 C 1.38107 * 120.07201 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47299 * 299.99495 * 1 2 3 30 30 H 1.08994 * 109.47664 * 60.00051 * 1 2 3 31 31 H 1.08999 * 109.47446 * 305.00112 * 4 2 1 32 32 H 1.09000 * 109.47247 * 65.00224 * 4 2 1 33 33 H 1.08999 * 109.46990 * 59.99887 * 6 5 4 34 34 H 1.09001 * 109.47091 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.46954 * 299.99791 * 6 5 4 36 36 H 1.08997 * 109.47307 * 90.00207 * 9 8 2 37 37 H 1.09001 * 109.46664 * 330.00005 * 9 8 2 38 38 H 1.08994 * 109.46936 * 210.00383 * 9 8 2 39 39 H 0.97004 * 119.99974 * 355.40983 * 12 10 8 40 40 H 1.07997 * 120.03181 * 359.97438 * 14 13 12 41 41 H 1.08000 * 119.96806 * 180.25742 * 15 14 13 42 42 H 1.08999 * 109.47463 * 30.01836 * 17 16 15 43 43 H 1.09004 * 109.47339 * 150.02542 * 17 16 15 44 44 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 45 45 H 1.08002 * 119.96294 * 179.97438 * 26 16 15 46 46 H 1.08001 * 120.03731 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 3.8479 -0.5931 1.3256 6 6 4.2568 -1.4930 2.8468 7 8 4.2205 0.7707 1.4668 8 7 2.0183 -0.6905 -1.1962 9 6 1.6644 -2.0932 -1.4281 10 6 2.7931 -0.0355 -2.0833 11 8 3.0865 1.1287 -1.8911 12 7 3.2428 -0.6709 -3.1835 13 6 3.9663 0.0339 -4.1521 14 6 3.8274 -0.2883 -5.4957 15 6 4.5393 0.4125 -6.4495 16 6 5.3976 1.4269 -6.0670 17 6 6.1774 2.1854 -7.1099 18 6 7.4978 1.4990 -7.3476 19 1 7.7471 0.6028 -6.7986 20 6 8.3876 2.0148 -8.2658 21 7 8.0842 3.1063 -8.9339 22 14 10.0240 1.1635 -8.5609 23 1 9.7823 -0.2227 -9.0353 24 1 10.7924 1.9109 -9.5885 25 1 10.7976 1.1254 -7.2939 26 6 5.5420 1.7467 -4.7294 27 6 4.8287 1.0536 -3.7712 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9131 -2.5239 2.7626 34 1 5.3363 -1.4806 2.9971 35 1 3.7668 -1.0146 3.6947 36 1 0.7376 -2.1444 -1.9994 37 1 1.5296 -2.5968 -0.4709 38 1 2.4629 -2.5817 -1.9864 39 1 3.0649 -1.6169 -3.3041 40 1 3.1609 -1.0837 -5.7947 41 1 4.4286 0.1652 -7.4950 42 1 5.6095 2.2125 -8.0399 43 1 6.3545 3.2032 -6.7624 44 1 8.7104 3.4694 -9.5797 45 1 6.2135 2.5393 -4.4338 46 1 4.9423 1.3035 -2.7267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932570832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:40 Heat of formation + Delta-G solvation = -30.468237 kcal Electronic energy + Delta-G solvation = -26844.123612 eV Core-core repulsion = 23054.071407 eV Total energy + Delta-G solvation = -3790.052206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77980 -38.59511 -36.76169 -35.90683 -34.93521 -33.20672 -32.30783 -30.23048 -30.09796 -29.36872 -27.77591 -27.35399 -26.45409 -23.54933 -22.33180 -21.95368 -20.26599 -19.56821 -18.66876 -17.77616 -17.07519 -16.31818 -16.21576 -16.07020 -15.73337 -15.01841 -14.87584 -14.58652 -14.30540 -14.15133 -13.98317 -13.60522 -13.50915 -13.32093 -13.13199 -12.87339 -12.82539 -12.74342 -12.67532 -12.47985 -12.26660 -11.95595 -11.90713 -11.35404 -11.30007 -11.20692 -10.76872 -10.57676 -10.40694 -10.33945 -10.06569 -9.80351 -9.38041 -9.22904 -9.04307 -8.49391 -8.36435 -8.19233 -7.29750 -5.97904 -4.01814 1.17880 2.00747 2.15879 2.31682 2.37854 3.12965 3.35973 3.39996 3.43156 3.51220 3.72743 4.31922 4.44007 4.55471 4.62738 4.64420 4.72777 4.77271 4.85617 5.02777 5.05093 5.18149 5.26753 5.33730 5.35925 5.48658 5.51954 5.59588 5.69623 5.75316 5.99466 6.08183 6.14589 6.28807 6.29851 6.56993 6.76054 7.02143 7.04048 7.25431 7.31225 7.58756 7.79238 7.81783 7.95027 7.97915 8.38928 8.49050 9.03354 9.61518 11.11670 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.002415 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.627449 B =11592.679199 C =12381.363246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.175 3.825 3 H 0.110 0.890 4 C -0.465 4.465 5 S 1.246 4.754 6 C -0.499 4.499 7 O -0.831 6.831 8 N -0.634 5.634 9 C 0.071 3.929 10 C 0.698 3.302 11 O -0.560 6.560 12 N -0.678 5.678 13 C 0.118 3.882 14 C -0.144 4.144 15 C -0.110 4.110 16 C -0.043 4.043 17 C 0.048 3.952 18 C -0.510 4.510 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.109 4.109 27 C -0.116 4.116 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.120 0.880 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 -17.225 20.338 31.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.070 3.930 3 H 0.128 0.872 4 C -0.603 4.603 5 S 1.443 4.557 6 C -0.656 4.656 7 O -0.826 6.826 8 N -0.373 5.373 9 C -0.072 4.072 10 C 0.399 3.601 11 O -0.435 6.435 12 N -0.327 5.327 13 C 0.025 3.975 14 C -0.164 4.164 15 C -0.128 4.128 16 C -0.044 4.044 17 C 0.011 3.989 18 C -0.548 4.548 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.127 4.127 27 C -0.136 4.136 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.238 0.762 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.504 -15.786 19.775 29.675 hybrid contribution -0.272 -0.234 1.633 1.672 sum -15.777 -16.019 21.408 31.045 Atomic orbital electron populations 1.22111 0.94123 1.02404 1.02735 1.20427 0.94504 0.97520 0.80588 0.87215 1.28116 1.21947 1.07285 1.02916 1.71077 0.87698 0.96152 1.00798 1.27751 1.08559 1.11129 1.18114 1.93212 1.75315 1.32237 1.81881 1.47200 1.53982 1.12576 1.23528 1.21799 1.01140 0.81630 1.02667 1.15947 0.79061 0.84842 0.80207 1.91010 1.61517 1.15007 1.75949 1.42583 1.57197 1.12507 1.20404 1.17301 0.95760 0.97383 0.87026 1.20694 1.02469 1.02370 0.90889 1.20848 0.97027 0.96153 0.98790 1.20699 0.93511 0.94715 0.95440 1.18343 0.93879 0.94933 0.91745 1.21041 1.00707 1.10912 1.22159 0.92481 1.25019 0.98466 0.95049 0.95870 1.69955 1.36414 1.21082 1.25957 0.86602 0.83634 0.79533 0.77932 1.20212 1.21320 1.20164 1.21023 0.99126 1.00133 0.92455 1.21192 0.95326 0.96560 1.00523 0.92063 0.91553 0.91705 0.88364 0.86199 0.87141 0.87654 0.90337 0.92292 0.90308 0.90897 0.76196 0.86947 0.86111 0.95384 0.95339 0.92844 0.86173 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 2 C 0.17 1.52 2.64 -67.93 -0.18 1.34 16 3 H 0.11 1.41 6.90 -51.93 -0.36 1.05 16 4 C -0.47 -2.79 5.33 37.16 0.20 -2.60 16 5 S 1.25 10.36 13.53 -107.50 -1.45 8.91 16 6 C -0.50 -2.90 10.74 101.05 1.09 -1.81 16 7 O -0.83 -13.41 18.14 -35.23 -0.64 -14.05 16 8 N -0.63 -5.32 2.47 -179.67 -0.44 -5.76 16 9 C 0.07 0.26 9.30 59.85 0.56 0.81 16 10 C 0.70 9.10 8.13 -86.92 -0.71 8.39 16 11 O -0.56 -10.11 13.10 5.28 0.07 -10.04 16 12 N -0.68 -8.14 5.22 -14.22 -0.07 -8.21 16 13 C 0.12 1.92 6.30 -83.69 -0.53 1.39 16 14 C -0.14 -2.30 9.97 -39.39 -0.39 -2.69 16 15 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 16 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 17 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 18 C -0.51 -14.38 9.09 -34.44 -0.31 -14.69 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 22 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 26 C -0.11 -2.28 9.69 -39.61 -0.38 -2.67 16 27 C -0.12 -2.20 8.70 -39.40 -0.34 -2.55 16 28 H 0.06 0.28 7.67 -51.92 -0.40 -0.12 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.12 0.28 6.47 -51.92 -0.34 -0.06 16 33 H 0.11 0.29 8.14 -51.92 -0.42 -0.13 16 34 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.08 6.34 -51.93 -0.33 -0.25 16 38 H 0.07 0.16 6.30 -51.93 -0.33 -0.17 16 39 H 0.40 3.15 6.52 -40.82 -0.27 2.89 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 46 H 0.13 2.55 6.22 -52.49 -0.33 2.22 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -39.22 390.81 -9.71 -48.93 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.95 Total: 0.79 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.82 Total: -17.09 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.22 Total: -39.98 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.57 Total: -24.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 10.36 SS G_CDS: -1.45 Total: 8.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.22 -9.71 -48.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932570832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.466 kcal (2) G-P(sol) polarization free energy of solvation -39.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds