Wall clock time and date at job start Tue Mar 31 2020 21:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46495 * 2 1 4 4 C 1.52995 * 109.47045 * 120.00165 * 2 1 3 5 5 S 1.81401 * 109.46764 * 185.00279 * 4 2 1 6 6 C 1.81409 * 102.99940 * 180.02562 * 5 4 2 7 7 O 1.42092 * 109.47220 * 63.61409 * 5 4 2 8 8 N 1.46493 * 109.46942 * 240.00298 * 2 1 3 9 9 C 1.46506 * 120.00242 * 299.99777 * 8 2 1 10 10 C 1.34775 * 120.00166 * 119.99955 * 8 2 1 11 11 O 1.21596 * 119.99782 * 359.97438 * 10 8 2 12 12 N 1.34771 * 120.00378 * 179.97438 * 10 8 2 13 13 C 1.39942 * 120.00332 * 175.41195 * 12 10 8 14 14 C 1.38867 * 120.07135 * 214.81191 * 13 12 10 15 15 C 1.38116 * 119.92926 * 179.76802 * 14 13 12 16 16 C 1.38279 * 120.06956 * 0.50541 * 15 14 13 17 17 C 1.50702 * 119.92853 * 179.72749 * 16 15 14 18 18 C 1.50701 * 109.47058 * 270.02031 * 17 16 15 19 19 H 1.08010 * 119.99660 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00421 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99675 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00248 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47010 * 60.00263 * 22 20 18 24 24 H 1.48495 * 109.46849 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46867 * 300.00155 * 22 20 18 26 26 C 1.38280 * 120.13944 * 359.74734 * 16 15 14 27 27 C 1.38107 * 120.07201 * 359.97438 * 26 16 15 28 28 H 1.09008 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47299 * 299.99495 * 1 2 3 30 30 H 1.08994 * 109.47664 * 60.00051 * 1 2 3 31 31 H 1.08999 * 109.47446 * 305.00112 * 4 2 1 32 32 H 1.09000 * 109.47247 * 65.00224 * 4 2 1 33 33 H 1.08999 * 109.46990 * 59.99887 * 6 5 4 34 34 H 1.09001 * 109.47091 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.46954 * 299.99791 * 6 5 4 36 36 H 1.08997 * 109.47307 * 90.00207 * 9 8 2 37 37 H 1.09001 * 109.46664 * 330.00005 * 9 8 2 38 38 H 1.08994 * 109.46936 * 210.00383 * 9 8 2 39 39 H 0.97004 * 119.99974 * 355.40983 * 12 10 8 40 40 H 1.07997 * 120.03181 * 359.97438 * 14 13 12 41 41 H 1.08000 * 119.96806 * 180.25742 * 15 14 13 42 42 H 1.08999 * 109.47463 * 30.01836 * 17 16 15 43 43 H 1.09004 * 109.47339 * 150.02542 * 17 16 15 44 44 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 45 45 H 1.08002 * 119.96294 * 179.97438 * 26 16 15 46 46 H 1.08001 * 120.03731 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 3.8479 -0.5931 1.3256 6 6 4.2568 -1.4930 2.8468 7 8 4.2205 0.7707 1.4668 8 7 2.0183 -0.6905 -1.1962 9 6 1.6644 -2.0932 -1.4281 10 6 2.7931 -0.0355 -2.0833 11 8 3.0865 1.1287 -1.8911 12 7 3.2428 -0.6709 -3.1835 13 6 3.9663 0.0339 -4.1521 14 6 3.8274 -0.2883 -5.4957 15 6 4.5393 0.4125 -6.4495 16 6 5.3976 1.4269 -6.0670 17 6 6.1774 2.1854 -7.1099 18 6 7.4978 1.4990 -7.3476 19 1 7.7471 0.6028 -6.7986 20 6 8.3876 2.0148 -8.2658 21 7 8.0842 3.1063 -8.9339 22 14 10.0240 1.1635 -8.5609 23 1 9.7823 -0.2227 -9.0353 24 1 10.7924 1.9109 -9.5885 25 1 10.7976 1.1254 -7.2939 26 6 5.5420 1.7467 -4.7294 27 6 4.8287 1.0536 -3.7712 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9131 -2.5239 2.7626 34 1 5.3363 -1.4806 2.9971 35 1 3.7668 -1.0146 3.6947 36 1 0.7376 -2.1444 -1.9994 37 1 1.5296 -2.5968 -0.4709 38 1 2.4629 -2.5817 -1.9864 39 1 3.0649 -1.6169 -3.3041 40 1 3.1609 -1.0837 -5.7947 41 1 4.4286 0.1652 -7.4950 42 1 5.6095 2.2125 -8.0399 43 1 6.3545 3.2032 -6.7624 44 1 8.7104 3.4694 -9.5797 45 1 6.2135 2.5393 -4.4338 46 1 4.9423 1.3035 -2.7267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932570832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:39 Heat of formation + Delta-G solvation = -58.961028 kcal Electronic energy + Delta-G solvation = -26845.359153 eV Core-core repulsion = 23054.071407 eV Total energy + Delta-G solvation = -3791.287746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80368 -39.92008 -37.70598 -36.83389 -36.25360 -35.03802 -33.35768 -31.73898 -31.67656 -29.88196 -28.38936 -28.30171 -27.66925 -25.25481 -23.80974 -23.14361 -21.69405 -20.51620 -19.55376 -18.54016 -18.46667 -18.14640 -17.13071 -17.00394 -16.66550 -16.44841 -15.95422 -15.86490 -15.53446 -15.27754 -14.70317 -14.61474 -14.51234 -14.40197 -14.19050 -14.06752 -13.79000 -13.62914 -13.41970 -13.32081 -13.26113 -13.12874 -13.07574 -12.79912 -12.61133 -12.56730 -12.41522 -12.01721 -11.90635 -11.64869 -11.47859 -11.14701 -11.13861 -10.81521 -10.56690 -9.76393 -9.69707 -9.19251 -8.77239 -8.14577 -6.29825 0.54817 0.56686 0.64102 1.41970 1.45777 1.49772 1.53716 1.76007 2.08868 2.43401 2.85500 2.92750 3.07931 3.14112 3.69780 4.02363 4.11972 4.19825 4.23462 4.25055 4.34858 4.44928 4.45898 4.52703 4.63949 4.69142 4.73037 4.74578 4.81743 4.88446 5.03807 5.08936 5.11210 5.19614 5.24443 5.34994 5.37242 5.46954 5.56395 5.59131 5.68455 5.79694 5.93334 6.14172 6.17778 6.32094 6.82890 6.92548 7.38466 7.52135 8.93025 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017533 B = 0.002415 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.627449 B =11592.679199 C =12381.363246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.169 3.831 3 H 0.054 0.946 4 C -0.444 4.444 5 S 1.239 4.761 6 C -0.482 4.482 7 O -0.928 6.928 8 N -0.619 5.619 9 C 0.053 3.947 10 C 0.691 3.309 11 O -0.618 6.618 12 N -0.661 5.661 13 C 0.139 3.861 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.075 4.075 17 C 0.057 3.943 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.262 1.262 24 H -0.282 1.282 25 H -0.270 1.270 26 C -0.124 4.124 27 C -0.126 4.126 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.426 0.574 40 H 0.165 0.835 41 H 0.128 0.872 42 H 0.007 0.993 43 H -0.006 1.006 44 H 0.265 0.735 45 H 0.101 0.899 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.505 -22.890 21.704 36.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.064 3.936 3 H 0.073 0.927 4 C -0.584 4.584 5 S 1.442 4.558 6 C -0.641 4.641 7 O -0.923 6.923 8 N -0.356 5.356 9 C -0.087 4.087 10 C 0.393 3.607 11 O -0.498 6.498 12 N -0.313 5.313 13 C 0.044 3.956 14 C -0.143 4.143 15 C -0.131 4.131 16 C -0.076 4.076 17 C 0.020 3.980 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.197 4.197 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.186 1.186 24 H -0.207 1.207 25 H -0.195 1.195 26 C -0.143 4.143 27 C -0.146 4.146 28 H 0.115 0.885 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.193 0.807 33 H 0.174 0.826 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.110 0.890 39 H 0.268 0.732 40 H 0.182 0.818 41 H 0.146 0.854 42 H 0.026 0.974 43 H 0.012 0.988 44 H 0.074 0.926 45 H 0.119 0.881 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.661 -21.519 21.157 34.966 hybrid contribution 0.197 1.410 1.380 1.983 sum -17.464 -20.109 22.537 34.890 Atomic orbital electron populations 1.22069 0.91962 1.04461 1.02154 1.20418 0.95988 0.95433 0.81808 0.92721 1.27916 1.18601 1.10254 1.01584 1.69778 0.89474 0.93879 1.02700 1.27593 1.08570 1.12678 1.15284 1.93110 1.78480 1.36128 1.84613 1.47191 1.52137 1.14316 1.21994 1.22324 1.02489 0.78379 1.05556 1.16203 0.79399 0.84331 0.80745 1.90997 1.63579 1.18010 1.77183 1.42320 1.56246 1.13428 1.19264 1.17324 0.94063 0.95871 0.88325 1.21014 1.01444 1.02278 0.89546 1.20971 0.96563 0.95472 1.00090 1.20367 0.95840 0.96860 0.94553 1.18083 0.94051 0.93790 0.92050 1.21380 1.01782 1.11054 1.22211 0.92404 1.25986 1.02562 0.95685 0.95454 1.70096 1.37952 1.22647 1.26633 0.85459 0.78509 0.78863 0.77986 1.18634 1.20750 1.19544 1.20885 1.00040 1.00639 0.92762 1.21127 0.96288 0.97839 0.99395 0.88503 0.91110 0.93501 0.87934 0.80725 0.82570 0.87937 0.90976 0.90883 0.86536 0.88985 0.73190 0.81758 0.85368 0.97423 0.98789 0.92648 0.88061 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.19 71.98 0.66 -0.88 16 2 C 0.17 2.68 2.64 44.99 0.12 2.79 16 3 H 0.05 1.52 6.90 -2.39 -0.02 1.50 16 4 C -0.44 -3.91 5.33 71.98 0.38 -3.53 16 5 S 1.24 19.76 13.53 -56.49 -0.76 19.00 16 6 C -0.48 -4.23 10.74 113.37 1.22 -3.01 16 7 O -0.93 -32.53 18.14 -148.98 -2.70 -35.24 16 8 N -0.62 -8.72 2.47 -840.62 -2.07 -10.79 16 9 C 0.05 0.08 9.30 127.77 1.19 1.26 16 10 C 0.69 17.39 8.13 179.06 1.45 18.85 16 11 O -0.62 -23.54 13.10 -4.02 -0.05 -23.59 16 12 N -0.66 -14.11 5.22 -317.17 -1.65 -15.77 16 13 C 0.14 4.32 6.30 38.15 0.24 4.57 16 14 C -0.12 -3.58 9.97 22.39 0.22 -3.36 16 15 C -0.11 -4.28 9.69 22.25 0.22 -4.06 16 16 C -0.08 -3.53 5.07 -19.84 -0.10 -3.63 16 17 C 0.06 3.21 5.10 29.10 0.15 3.36 16 18 C -0.53 -30.90 9.09 25.60 0.23 -30.67 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 22 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 C -0.12 -5.62 9.69 22.25 0.22 -5.40 16 27 C -0.13 -5.00 8.70 22.39 0.19 -4.81 16 28 H 0.10 0.34 7.67 -2.38 -0.02 0.32 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.18 -0.41 6.47 -2.39 -0.02 -0.43 16 33 H 0.16 -0.07 8.14 -2.39 -0.02 -0.08 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 37 H 0.12 -0.66 6.34 -2.39 -0.02 -0.68 16 38 H 0.09 -0.17 6.30 -2.39 -0.02 -0.19 16 39 H 0.43 4.64 6.52 -92.71 -0.60 4.04 16 40 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 41 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 42 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 43 H -0.01 -0.38 8.08 -2.38 -0.02 -0.40 16 44 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 46 H 0.12 5.03 6.22 -2.91 -0.02 5.01 16 Total: -1.00 -97.68 390.81 2.30 -95.38 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.38 Total: 9.51 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 6.86 Total: -28.00 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -3.44 Total: -84.15 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -2.75 Total: -58.83 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 19.76 SS G_CDS: -0.76 Total: 19.00 kcal Total: -97.68 2.30 -95.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932570832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.420 kcal (2) G-P(sol) polarization free energy of solvation -97.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds