Wall clock time and date at job start Tue Mar 31 2020 20:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47245 * 2 1 4 4 C 1.52999 * 109.46893 * 239.99615 * 2 1 3 5 5 C 1.53006 * 109.46961 * 175.00359 * 4 2 1 6 6 N 1.46492 * 109.46860 * 180.02562 * 5 4 2 7 7 C 1.34781 * 119.99634 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00091 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99719 * 180.02562 * 7 6 5 10 10 C 1.39951 * 119.99837 * 175.38212 * 9 7 6 11 11 C 1.38858 * 120.06710 * 214.81127 * 10 9 7 12 12 C 1.38116 * 119.92925 * 179.76560 * 11 10 9 13 13 C 1.38282 * 120.06597 * 0.51318 * 12 11 10 14 14 C 1.50706 * 119.92724 * 179.72489 * 13 12 11 15 15 C 1.50699 * 109.46724 * 270.01249 * 14 13 12 16 16 H 1.08002 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00082 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46962 * 60.00265 * 19 17 15 21 21 H 1.48499 * 109.47128 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47369 * 300.00510 * 19 17 15 23 23 C 1.38280 * 120.14121 * 359.73899 * 13 12 11 24 24 C 1.38112 * 120.07050 * 0.02562 * 23 13 12 25 25 S 1.81400 * 109.46849 * 119.99953 * 2 1 3 26 26 C 1.81401 * 103.00134 * 304.99916 * 25 2 1 27 27 O 1.42097 * 109.47095 * 188.61076 * 25 2 1 28 28 H 1.08998 * 109.46761 * 59.99985 * 1 2 3 29 29 H 1.08994 * 109.47620 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47159 * 300.00557 * 1 2 3 31 31 H 1.09004 * 109.47314 * 294.99925 * 4 2 1 32 32 H 1.08997 * 109.47214 * 55.00338 * 4 2 1 33 33 H 1.09004 * 109.46752 * 299.99911 * 5 4 2 34 34 H 1.08997 * 109.47174 * 59.99954 * 5 4 2 35 35 H 0.97001 * 120.00663 * 0.02562 * 6 5 4 36 36 H 0.96997 * 120.00177 * 355.37795 * 9 7 6 37 37 H 1.08000 * 120.03849 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.96966 * 180.24712 * 12 11 10 39 39 H 1.08990 * 109.47405 * 30.01019 * 14 13 12 40 40 H 1.09000 * 109.46852 * 150.01979 * 14 13 12 41 41 H 0.96998 * 120.00255 * 179.97438 * 18 17 15 42 42 H 1.08004 * 119.96282 * 180.02562 * 23 13 12 43 43 H 1.07998 * 120.03717 * 179.97438 * 24 23 13 44 44 H 1.08997 * 109.47584 * 59.99698 * 26 25 2 45 45 H 1.08993 * 109.47197 * 180.02562 * 26 25 2 46 46 H 1.09008 * 109.46657 * 300.00217 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0530 -1.3036 -2.5100 7 6 5.3739 -1.3389 -2.7758 8 8 6.1602 -0.7984 -2.0223 9 7 5.8230 -1.9734 -3.8768 10 6 7.1828 -1.9283 -4.2047 11 6 7.5767 -1.8937 -5.5358 12 6 8.9193 -1.8442 -5.8560 13 6 9.8712 -1.8399 -4.8529 14 6 11.3355 -1.7922 -5.2061 15 6 11.8623 -3.1962 -5.3549 16 1 11.2026 -4.0388 -5.2088 17 6 13.1861 -3.4052 -5.6786 18 7 13.9893 -2.3792 -5.8570 19 14 13.8389 -5.1456 -5.8637 20 1 13.0918 -5.8425 -6.9415 21 1 15.2815 -5.0986 -6.2128 22 1 13.6622 -5.8793 -4.5848 23 6 9.4822 -1.8796 -3.5266 24 6 8.1411 -1.9242 -3.1997 25 16 2.1346 -0.8551 1.4812 26 6 1.3148 0.0375 2.8309 27 8 3.5413 -0.6840 1.5859 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7516 -1.7716 -1.2055 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4368 -1.3573 34 1 3.9994 -1.0729 -0.4259 35 1 3.4257 -1.7345 -3.1114 36 1 5.2038 -2.4614 -4.4418 37 1 6.8339 -1.9011 -6.3197 38 1 9.2263 -1.8132 -6.8911 39 1 11.4655 -1.2540 -6.1449 40 1 11.8835 -1.2805 -4.4150 41 1 14.9207 -2.5261 -6.0844 42 1 10.2281 -1.8757 -2.7454 43 1 7.8380 -1.9556 -2.1636 44 1 0.2339 -0.0403 2.7142 45 1 1.6097 -0.3974 3.7859 46 1 1.6086 1.0868 2.8037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932573056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:20 Heat of formation + Delta-G solvation = -49.062005 kcal Electronic energy + Delta-G solvation = -25679.110311 eV Core-core repulsion = 21888.251819 eV Total energy + Delta-G solvation = -3790.858492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40610 -38.36679 -36.70731 -36.10647 -34.73339 -34.09857 -32.90552 -30.66385 -30.18560 -29.82619 -28.56486 -26.46019 -24.20469 -22.98569 -22.27723 -22.17808 -21.02333 -20.07527 -18.42325 -17.75890 -17.28905 -16.94588 -16.23969 -15.71257 -15.54429 -15.28008 -14.94035 -14.69551 -14.45149 -14.31309 -14.14452 -14.08350 -13.61865 -13.17884 -13.06654 -12.95414 -12.86826 -12.69765 -12.51930 -12.16839 -12.14287 -11.89506 -11.67086 -11.64528 -11.31169 -11.20532 -10.76065 -10.57544 -10.34088 -10.30418 -10.03896 -9.78895 -9.37148 -9.24081 -9.12383 -8.68283 -8.35789 -8.17665 -7.26976 -5.97189 -4.01076 1.03873 2.04747 2.11095 2.18075 2.60572 3.26745 3.34722 3.36510 3.40257 3.43840 4.00780 4.18475 4.34627 4.45250 4.56688 4.63213 4.66121 4.72524 4.80518 4.86746 5.06014 5.23413 5.30050 5.36502 5.41456 5.51258 5.54470 5.63371 5.68813 5.77568 6.04957 6.16277 6.18696 6.30186 6.32624 6.65774 6.77774 7.05374 7.14468 7.26705 7.32341 7.59625 7.82660 7.95171 7.97853 7.98643 8.39903 8.61241 9.04024 9.62135 11.12320 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.001740 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.000561 B =16085.761075 C =16613.340022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.413 4.413 3 H 0.093 0.907 4 C -0.104 4.104 5 C 0.115 3.885 6 N -0.746 5.746 7 C 0.699 3.301 8 O -0.567 6.567 9 N -0.682 5.682 10 C 0.121 3.879 11 C -0.145 4.145 12 C -0.109 4.109 13 C -0.045 4.045 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.109 4.109 24 C -0.116 4.116 25 S 1.239 4.761 26 C -0.491 4.491 27 O -0.834 6.834 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.394 0.606 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.983 1.394 11.304 37.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.531 4.531 3 H 0.112 0.888 4 C -0.143 4.143 5 C -0.009 4.009 6 N -0.403 5.403 7 C 0.399 3.601 8 O -0.442 6.442 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.166 4.166 12 C -0.128 4.128 13 C -0.045 4.045 14 C 0.011 3.989 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.127 4.127 24 C -0.137 4.137 25 S 1.436 4.564 26 C -0.649 4.649 27 O -0.829 6.829 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.132 0.868 45 H 0.124 0.876 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -34.463 1.238 12.066 36.535 hybrid contribution 0.285 0.983 -0.696 1.238 sum -34.178 2.221 11.371 36.088 Atomic orbital electron populations 1.21513 0.90851 1.03200 1.02944 1.27394 1.03669 1.09479 1.12537 0.88814 1.21470 0.94549 1.01320 0.96949 1.21604 0.92900 0.98170 0.88256 1.45014 1.05791 1.61076 1.28408 1.15944 0.82501 0.79719 0.81916 1.90975 1.54305 1.50121 1.48800 1.42434 1.08216 1.54952 1.27309 1.17302 0.81182 1.05396 0.93341 1.20703 0.96572 1.05746 0.93584 1.20848 0.91349 1.01020 0.99565 1.20702 0.98538 0.93029 0.92277 1.18341 0.85330 0.97641 0.97565 1.21045 0.94618 0.91664 1.47516 0.92502 1.25019 0.96935 0.97037 0.95413 1.69952 1.05506 1.29876 1.48051 0.86597 0.77677 0.84748 0.78643 1.20228 1.21292 1.20180 1.21019 0.94695 1.00393 0.96629 1.21178 0.92228 1.01078 0.99172 1.70658 0.89997 1.09720 0.86048 1.27686 1.10878 1.10855 1.15436 1.93235 1.24972 1.81486 1.83243 0.91725 0.90846 0.91938 0.89927 0.90167 0.91787 0.89226 0.77224 0.76553 0.86947 0.86082 0.95358 0.95322 0.92855 0.86157 0.85227 0.86836 0.87559 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.17 8.94 37.16 0.33 0.16 16 2 C -0.41 -1.76 2.89 -26.73 -0.08 -1.84 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.10 -0.50 4.80 -26.73 -0.13 -0.63 16 5 C 0.12 1.18 5.34 -4.04 -0.02 1.16 16 6 N -0.75 -7.60 5.56 -65.23 -0.36 -7.97 16 7 C 0.70 10.61 8.41 -86.91 -0.73 9.87 16 8 O -0.57 -11.51 13.78 5.29 0.07 -11.44 16 9 N -0.68 -9.39 5.34 -14.22 -0.08 -9.47 16 10 C 0.12 2.15 6.30 -83.69 -0.53 1.62 16 11 C -0.15 -2.51 9.97 -39.40 -0.39 -2.91 16 12 C -0.11 -2.21 9.69 -39.61 -0.38 -2.59 16 13 C -0.04 -1.04 5.07 -104.59 -0.53 -1.57 16 14 C 0.05 1.29 5.10 -29.03 -0.15 1.14 16 15 C -0.51 -14.69 9.09 -34.44 -0.31 -15.01 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 19 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.11 -2.39 9.69 -39.61 -0.38 -2.77 16 24 C -0.12 -2.37 8.70 -39.40 -0.34 -2.71 16 25 S 1.24 6.20 12.99 -107.50 -1.40 4.80 16 26 C -0.49 -1.81 10.14 101.05 1.02 -0.78 16 27 O -0.83 -10.77 15.80 -35.23 -0.56 -11.33 16 28 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.06 0.04 6.51 -51.93 -0.34 -0.30 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.17 5.58 -51.93 -0.29 0.88 16 35 H 0.39 2.38 8.49 -40.82 -0.35 2.03 16 36 H 0.40 3.79 8.84 -40.82 -0.36 3.43 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 42 H 0.12 2.60 8.06 -52.48 -0.42 2.18 16 43 H 0.13 2.71 6.22 -52.49 -0.33 2.38 16 44 H 0.11 0.08 6.90 -51.93 -0.36 -0.28 16 45 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 391.27 15.07 5.90 5.90 Total: -1.00 -40.94 391.27 -10.48 -51.42 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.05 Total: 2.70 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.72 Total: -15.29 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.30 Total: -43.76 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.48 Total: -22.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.40 Total: 4.80 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -40.94 -10.48 -51.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932573056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.359 kcal (2) G-P(sol) polarization free energy of solvation -40.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds