Wall clock time and date at job start Tue Mar 31 2020 20:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47245 * 2 1 4 4 C 1.52999 * 109.46893 * 239.99615 * 2 1 3 5 5 C 1.53006 * 109.46961 * 175.00359 * 4 2 1 6 6 N 1.46492 * 109.46860 * 180.02562 * 5 4 2 7 7 C 1.34781 * 119.99634 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00091 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99719 * 180.02562 * 7 6 5 10 10 C 1.39951 * 119.99837 * 175.38212 * 9 7 6 11 11 C 1.38858 * 120.06710 * 214.81127 * 10 9 7 12 12 C 1.38116 * 119.92925 * 179.76560 * 11 10 9 13 13 C 1.38282 * 120.06597 * 0.51318 * 12 11 10 14 14 C 1.50706 * 119.92724 * 179.72489 * 13 12 11 15 15 C 1.50699 * 109.46724 * 270.01249 * 14 13 12 16 16 H 1.08002 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00082 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46962 * 60.00265 * 19 17 15 21 21 H 1.48499 * 109.47128 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47369 * 300.00510 * 19 17 15 23 23 C 1.38280 * 120.14121 * 359.73899 * 13 12 11 24 24 C 1.38112 * 120.07050 * 0.02562 * 23 13 12 25 25 S 1.81400 * 109.46849 * 119.99953 * 2 1 3 26 26 C 1.81401 * 103.00134 * 304.99916 * 25 2 1 27 27 O 1.42097 * 109.47095 * 188.61076 * 25 2 1 28 28 H 1.08998 * 109.46761 * 59.99985 * 1 2 3 29 29 H 1.08994 * 109.47620 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47159 * 300.00557 * 1 2 3 31 31 H 1.09004 * 109.47314 * 294.99925 * 4 2 1 32 32 H 1.08997 * 109.47214 * 55.00338 * 4 2 1 33 33 H 1.09004 * 109.46752 * 299.99911 * 5 4 2 34 34 H 1.08997 * 109.47174 * 59.99954 * 5 4 2 35 35 H 0.97001 * 120.00663 * 0.02562 * 6 5 4 36 36 H 0.96997 * 120.00177 * 355.37795 * 9 7 6 37 37 H 1.08000 * 120.03849 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.96966 * 180.24712 * 12 11 10 39 39 H 1.08990 * 109.47405 * 30.01019 * 14 13 12 40 40 H 1.09000 * 109.46852 * 150.01979 * 14 13 12 41 41 H 0.96998 * 120.00255 * 179.97438 * 18 17 15 42 42 H 1.08004 * 119.96282 * 180.02562 * 23 13 12 43 43 H 1.07998 * 120.03717 * 179.97438 * 24 23 13 44 44 H 1.08997 * 109.47584 * 59.99698 * 26 25 2 45 45 H 1.08993 * 109.47197 * 180.02562 * 26 25 2 46 46 H 1.09008 * 109.46657 * 300.00217 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3136 6 7 4.0530 -1.3036 -2.5100 7 6 5.3739 -1.3389 -2.7758 8 8 6.1602 -0.7984 -2.0223 9 7 5.8230 -1.9734 -3.8768 10 6 7.1828 -1.9283 -4.2047 11 6 7.5767 -1.8937 -5.5358 12 6 8.9193 -1.8442 -5.8560 13 6 9.8712 -1.8399 -4.8529 14 6 11.3355 -1.7922 -5.2061 15 6 11.8623 -3.1962 -5.3549 16 1 11.2026 -4.0388 -5.2088 17 6 13.1861 -3.4052 -5.6786 18 7 13.9893 -2.3792 -5.8570 19 14 13.8389 -5.1456 -5.8637 20 1 13.0918 -5.8425 -6.9415 21 1 15.2815 -5.0986 -6.2128 22 1 13.6622 -5.8793 -4.5848 23 6 9.4822 -1.8796 -3.5266 24 6 8.1411 -1.9242 -3.1997 25 16 2.1346 -0.8551 1.4812 26 6 1.3148 0.0375 2.8309 27 8 3.5413 -0.6840 1.5859 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7516 -1.7716 -1.2055 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4368 -1.3573 34 1 3.9994 -1.0729 -0.4259 35 1 3.4257 -1.7345 -3.1114 36 1 5.2038 -2.4614 -4.4418 37 1 6.8339 -1.9011 -6.3197 38 1 9.2263 -1.8132 -6.8911 39 1 11.4655 -1.2540 -6.1449 40 1 11.8835 -1.2805 -4.4150 41 1 14.9207 -2.5261 -6.0844 42 1 10.2281 -1.8757 -2.7454 43 1 7.8380 -1.9556 -2.1636 44 1 0.2339 -0.0403 2.7142 45 1 1.6097 -0.3974 3.7859 46 1 1.6086 1.0868 2.8037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932573056.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:19 Heat of formation + Delta-G solvation = -80.184943 kcal Electronic energy + Delta-G solvation = -25680.459903 eV Core-core repulsion = 21888.251819 eV Total energy + Delta-G solvation = -3792.208084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69033 -39.83904 -37.49100 -36.80973 -36.23251 -35.12526 -34.69972 -32.23868 -31.77059 -30.54944 -29.16617 -28.16143 -25.41199 -24.35465 -23.78297 -22.74824 -22.37234 -21.59578 -19.57531 -18.61455 -18.47729 -18.24446 -17.51970 -16.90458 -16.66000 -16.47685 -15.98290 -15.88849 -15.80055 -15.40045 -15.11213 -14.65129 -14.62841 -14.50227 -14.47751 -14.25846 -13.67194 -13.60260 -13.41720 -13.32267 -13.28172 -13.15787 -12.65596 -12.60692 -12.49565 -12.46830 -12.15607 -12.08628 -11.94671 -11.72098 -11.55582 -11.27936 -10.92821 -10.85271 -10.59404 -10.18657 -9.77018 -9.18051 -8.85490 -8.17523 -6.32628 0.47518 0.56891 0.64371 1.39766 1.43494 1.50634 1.51661 1.74854 2.01451 2.40891 2.89229 3.00206 3.11316 3.14293 3.70429 3.87807 4.04751 4.09955 4.16120 4.26037 4.36931 4.38186 4.48345 4.52973 4.57347 4.65450 4.66438 4.73536 4.94490 4.99334 5.07011 5.12959 5.14369 5.23023 5.29978 5.33074 5.35818 5.41854 5.49346 5.50664 5.62054 5.75805 5.96246 6.08131 6.12962 6.25958 6.79570 7.00127 7.35580 7.46478 8.90321 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.001740 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.000561 B =16085.761075 C =16613.340022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.404 4.404 3 H 0.070 0.930 4 C -0.097 4.097 5 C 0.112 3.888 6 N -0.718 5.718 7 C 0.692 3.308 8 O -0.624 6.624 9 N -0.663 5.663 10 C 0.136 3.864 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.076 4.076 14 C 0.057 3.943 15 C -0.529 4.529 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.969 3.031 20 H -0.263 1.263 21 H -0.280 1.280 22 H -0.271 1.271 23 C -0.123 4.123 24 C -0.127 4.127 25 S 1.269 4.731 26 C -0.485 4.485 27 O -0.924 6.924 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.420 0.580 36 H 0.427 0.573 37 H 0.164 0.836 38 H 0.130 0.870 39 H 0.009 0.991 40 H -0.004 1.004 41 H 0.265 0.735 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.153 0.847 45 H 0.107 0.893 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.885 -0.479 9.998 42.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.523 4.523 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.012 4.012 6 N -0.376 5.376 7 C 0.392 3.608 8 O -0.503 6.503 9 N -0.313 5.313 10 C 0.041 3.959 11 C -0.145 4.145 12 C -0.130 4.130 13 C -0.077 4.077 14 C 0.020 3.980 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.142 4.142 24 C -0.148 4.148 25 S 1.470 4.530 26 C -0.644 4.644 27 O -0.920 6.920 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.258 0.742 36 H 0.266 0.734 37 H 0.182 0.818 38 H 0.148 0.852 39 H 0.027 0.973 40 H 0.015 0.985 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.137 0.863 44 H 0.172 0.828 45 H 0.126 0.874 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -39.448 -0.678 10.732 40.887 hybrid contribution 1.601 1.682 -0.224 2.333 sum -37.847 1.005 10.508 39.292 Atomic orbital electron populations 1.21626 0.87643 1.05591 1.03720 1.27318 1.06061 1.07698 1.11255 0.91145 1.21557 0.89969 1.04061 0.98002 1.21650 0.96780 0.95836 0.86963 1.44766 1.04340 1.59963 1.28522 1.16247 0.83636 0.79358 0.81528 1.90958 1.56242 1.52446 1.50695 1.42162 1.06984 1.54820 1.27328 1.17364 0.82560 1.02906 0.93079 1.21023 0.96117 1.02982 0.94331 1.20988 0.92259 1.00550 0.99202 1.20414 0.96965 0.96737 0.93539 1.18090 0.88042 0.96496 0.95350 1.21363 0.95203 0.92428 1.47649 0.92547 1.25979 0.97120 1.01734 0.94766 1.70088 1.05910 1.32383 1.48742 0.85450 0.77209 0.79066 0.79028 1.18785 1.20557 1.19576 1.20905 0.95470 1.01727 0.96057 1.21123 0.92079 1.02023 0.99561 1.69474 0.87097 1.09926 0.86508 1.27640 1.13041 1.09274 1.14438 1.93114 1.29848 1.83906 1.85105 0.91411 0.87667 0.90841 0.86195 0.88063 0.94995 0.92164 0.74167 0.73409 0.81845 0.85165 0.97293 0.98548 0.92598 0.87651 0.86315 0.82843 0.87403 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.18 8.94 71.98 0.64 0.83 16 2 C -0.40 -2.67 2.89 30.59 0.09 -2.58 16 3 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.10 -0.67 4.80 30.60 0.15 -0.53 16 5 C 0.11 2.29 5.34 86.38 0.46 2.75 16 6 N -0.72 -13.28 5.56 -478.54 -2.66 -15.94 16 7 C 0.69 20.37 8.41 179.05 1.51 21.87 16 8 O -0.62 -26.24 13.78 -3.97 -0.05 -26.30 16 9 N -0.66 -16.51 5.34 -317.18 -1.70 -18.20 16 10 C 0.14 4.61 6.30 38.14 0.24 4.85 16 11 C -0.12 -3.92 9.97 22.39 0.22 -3.70 16 12 C -0.11 -4.43 9.69 22.25 0.22 -4.21 16 13 C -0.08 -3.65 5.07 -19.84 -0.10 -3.75 16 14 C 0.06 3.26 5.10 29.10 0.15 3.40 16 15 C -0.53 -31.46 9.09 25.60 0.23 -31.22 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.00 0.11 5.46 84.65 0.46 0.58 16 18 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 19 Si 0.97 45.59 29.54 68.60 2.03 47.62 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C -0.12 -5.71 9.69 22.25 0.22 -5.49 16 24 C -0.13 -5.33 8.70 22.39 0.19 -5.13 16 25 S 1.27 12.13 12.99 -56.49 -0.73 11.40 16 26 C -0.48 -2.83 10.14 113.37 1.15 -1.68 16 27 O -0.92 -25.99 15.80 -148.98 -2.35 -28.35 16 28 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.07 -0.22 6.51 -2.39 -0.02 -0.24 16 31 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.66 5.58 -2.39 -0.01 1.65 16 35 H 0.42 3.38 8.49 -92.71 -0.79 2.59 16 36 H 0.43 6.13 8.84 -92.71 -0.82 5.31 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 39 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 40 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 41 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.11 5.02 8.06 -2.91 -0.02 4.99 16 43 H 0.12 5.23 6.22 -2.91 -0.02 5.22 16 44 H 0.15 -0.37 6.90 -2.39 -0.02 -0.39 16 45 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -98.27 391.27 0.03 -98.24 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -0.61 Total: 13.31 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.83 Total: -24.03 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -4.07 Total: -91.90 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.41 Total: -54.64 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: 12.13 SS G_CDS: -0.73 Total: 11.40 kcal Total: -98.27 0.03 -98.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932573056.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.056 kcal (2) G-P(sol) polarization free energy of solvation -98.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds