Wall clock time and date at job start Tue Mar 31 2020 20:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47379 * 119.99972 * 2 1 3 5 5 C 1.53004 * 109.46899 * 184.99952 * 4 2 1 6 6 N 1.46504 * 109.46523 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99446 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00266 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99757 * 180.02562 * 7 6 5 10 10 C 1.39943 * 119.99581 * 175.37921 * 9 7 6 11 11 C 1.38871 * 120.06468 * 214.81096 * 10 9 7 12 12 C 1.38118 * 119.92652 * 179.77247 * 11 10 9 13 13 C 1.38285 * 120.06820 * 0.50264 * 12 11 10 14 14 C 1.50703 * 119.92512 * 179.72249 * 13 12 11 15 15 C 1.50698 * 109.47306 * 270.02461 * 14 13 12 16 16 H 1.08002 * 119.99897 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99756 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47483 * 90.00192 * 19 17 15 21 21 H 1.48508 * 109.46820 * 209.99991 * 19 17 15 22 22 H 1.48496 * 109.47316 * 329.99638 * 19 17 15 23 23 C 1.38272 * 120.14199 * 359.75514 * 13 12 11 24 24 C 1.38113 * 120.07195 * 359.97438 * 23 13 12 25 25 S 1.81397 * 109.46977 * 240.00280 * 2 1 3 26 26 C 1.81404 * 103.00258 * 54.99756 * 25 2 1 27 27 O 1.42104 * 109.47172 * 171.38531 * 25 2 1 28 28 H 1.09004 * 109.46632 * 299.99744 * 1 2 3 29 29 H 1.08991 * 109.47419 * 60.00000 * 1 2 3 30 30 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46790 * 65.00209 * 4 2 1 32 32 H 1.08995 * 109.47203 * 304.99697 * 4 2 1 33 33 H 1.08995 * 109.46985 * 299.99879 * 5 4 2 34 34 H 1.08993 * 109.47194 * 60.00491 * 5 4 2 35 35 H 0.96997 * 120.00532 * 0.02562 * 6 5 4 36 36 H 0.97000 * 120.00077 * 355.37996 * 9 7 6 37 37 H 1.08001 * 120.03909 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.96217 * 180.25871 * 12 11 10 39 39 H 1.08999 * 109.46950 * 30.02939 * 14 13 12 40 40 H 1.09001 * 109.46866 * 150.02817 * 14 13 12 41 41 H 0.96994 * 119.99792 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.96655 * 180.02562 * 23 13 12 43 43 H 1.07995 * 120.04063 * 179.97438 * 24 23 13 44 44 H 1.09002 * 109.46605 * 59.99728 * 26 25 2 45 45 H 1.08993 * 109.47310 * 180.02562 * 26 25 2 46 46 H 1.08999 * 109.46875 * 300.00169 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3135 6 7 4.0533 -1.3044 2.5094 7 6 5.3742 -1.3397 2.7750 8 8 6.1604 -0.7977 2.0224 9 7 5.8236 -1.9760 3.8749 10 6 7.1995 -2.0965 4.1004 11 6 7.7080 -3.2383 4.7056 12 6 9.0669 -3.3562 4.9225 13 6 9.9197 -2.3343 4.5471 14 6 11.4012 -2.4637 4.7910 15 6 11.7371 -1.9064 6.1503 16 1 10.9559 -1.4995 6.7752 17 6 13.0418 -1.9158 6.5960 18 7 13.9931 -2.4116 5.8352 19 14 13.4581 -1.2256 8.2812 20 1 13.3653 -2.3062 9.2955 21 1 14.8388 -0.6791 8.2649 22 1 12.5011 -0.1426 8.6227 23 6 9.4158 -1.1939 3.9492 24 6 8.0586 -1.0722 3.7245 25 16 2.1346 -0.8551 -1.4812 26 6 1.3147 0.0375 -2.8309 27 8 3.5414 -0.6838 -1.5859 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2617 2.1369 33 1 3.9994 -1.0727 0.4258 34 1 3.8532 0.4370 1.3573 35 1 3.4261 -1.7365 3.1101 36 1 5.1934 -2.3504 4.5101 37 1 7.0420 -4.0350 5.0026 38 1 9.4634 -4.2457 5.3893 39 1 11.6859 -3.5150 4.7488 40 1 11.9450 -1.9090 4.0264 41 1 14.9110 -2.4179 6.1486 42 1 10.0844 -0.3977 3.6569 43 1 7.6656 -0.1811 3.2578 44 1 1.6085 1.0868 -2.8037 45 1 1.6089 -0.3979 -3.7858 46 1 0.2338 -0.0404 -2.7141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932573057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:23 Heat of formation + Delta-G solvation = -49.089585 kcal Electronic energy + Delta-G solvation = -25675.379583 eV Core-core repulsion = 21884.519896 eV Total energy + Delta-G solvation = -3790.859688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40566 -38.36589 -36.70713 -36.10328 -34.73356 -34.09823 -32.90803 -30.66424 -30.18625 -29.82629 -28.56471 -26.46149 -24.20529 -22.98746 -22.27873 -22.17833 -21.02321 -20.07723 -18.42540 -17.75275 -17.28794 -16.95055 -16.24504 -15.71799 -15.53136 -15.28659 -14.89880 -14.72641 -14.52241 -14.22998 -14.14505 -14.09917 -13.62289 -13.17360 -13.06343 -12.96010 -12.86837 -12.69789 -12.52767 -12.16975 -12.14541 -11.89070 -11.66746 -11.65293 -11.30868 -11.20809 -10.77102 -10.57575 -10.34301 -10.29717 -10.04094 -9.78553 -9.37131 -9.23931 -9.11980 -8.68128 -8.36431 -8.17642 -7.26869 -5.97655 -4.01430 1.03978 2.04951 2.11229 2.18058 2.60440 3.27026 3.34213 3.34776 3.40287 3.44995 4.00766 4.18474 4.34628 4.44826 4.56726 4.63362 4.66170 4.72527 4.80779 4.86522 5.06099 5.23435 5.29902 5.36154 5.41522 5.51564 5.54437 5.63462 5.68130 5.77835 6.04806 6.16174 6.18509 6.30191 6.32509 6.65709 6.77559 7.05207 7.14408 7.26699 7.32111 7.59754 7.82645 7.95174 7.97792 7.98450 8.39679 8.61261 9.03961 9.61830 11.11905 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.001708 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.609730 B =16387.516836 C =16714.150725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.413 4.413 3 H 0.093 0.907 4 C -0.104 4.104 5 C 0.115 3.885 6 N -0.746 5.746 7 C 0.699 3.301 8 O -0.567 6.567 9 N -0.682 5.682 10 C 0.121 3.879 11 C -0.145 4.145 12 C -0.109 4.109 13 C -0.045 4.045 14 C 0.048 3.952 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.109 4.109 24 C -0.117 4.117 25 S 1.239 4.761 26 C -0.491 4.491 27 O -0.834 6.834 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.394 0.606 36 H 0.400 0.600 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.846 -0.210 -12.271 37.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.531 4.531 3 H 0.112 0.888 4 C -0.143 4.143 5 C -0.009 4.009 6 N -0.403 5.403 7 C 0.399 3.601 8 O -0.442 6.442 9 N -0.329 5.329 10 C 0.028 3.972 11 C -0.166 4.166 12 C -0.128 4.128 13 C -0.045 4.045 14 C 0.011 3.989 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.127 4.127 24 C -0.137 4.137 25 S 1.436 4.564 26 C -0.649 4.649 27 O -0.829 6.829 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.228 0.772 36 H 0.234 0.766 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.100 0.900 45 H 0.124 0.876 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -34.320 -0.460 -13.096 36.737 hybrid contribution 0.165 2.323 1.523 2.782 sum -34.155 1.862 -11.573 36.110 Atomic orbital electron populations 1.21512 0.90851 1.03202 1.02942 1.27394 1.03669 1.09474 1.12543 0.88818 1.21469 0.94546 1.01327 0.96945 1.21605 0.92898 0.98133 0.88295 1.45016 1.05832 1.60987 1.28454 1.15946 0.82495 0.80039 0.81605 1.90976 1.54319 1.49230 1.49671 1.42433 1.06454 1.60235 1.23789 1.17303 0.81155 0.95238 1.03500 1.20709 0.95865 0.95702 1.04292 1.20850 0.91790 0.99578 1.00536 1.20697 0.98999 0.92287 0.92557 1.18347 0.85146 0.98139 0.97283 1.21084 0.93008 1.39862 1.00827 0.92467 1.25020 0.96403 0.95499 0.97503 1.69963 1.00693 1.45851 1.36849 0.86540 0.77605 0.79293 0.84276 1.20645 1.21213 1.19853 1.21010 0.94105 0.98187 0.99436 1.21159 0.93321 0.98212 1.00988 1.70662 0.90006 1.09718 0.86050 1.27686 1.10879 1.10849 1.15441 1.93238 1.24957 1.81477 1.83241 0.91732 0.91931 0.90846 0.89925 0.90169 0.89224 0.91783 0.77223 0.76553 0.86903 0.86060 0.95331 0.95309 0.92908 0.86186 0.85335 0.90026 0.87559 0.86842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.17 8.94 37.16 0.33 0.16 16 2 C -0.41 -1.76 2.89 -26.73 -0.08 -1.84 16 3 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 4 C -0.10 -0.51 4.80 -26.73 -0.13 -0.63 16 5 C 0.12 1.18 5.34 -4.04 -0.02 1.16 16 6 N -0.75 -7.61 5.56 -65.22 -0.36 -7.97 16 7 C 0.70 10.61 8.41 -86.91 -0.73 9.88 16 8 O -0.57 -11.52 13.78 5.29 0.07 -11.44 16 9 N -0.68 -9.39 5.34 -14.22 -0.08 -9.46 16 10 C 0.12 2.15 6.30 -83.69 -0.53 1.63 16 11 C -0.15 -2.50 9.97 -39.39 -0.39 -2.89 16 12 C -0.11 -2.20 9.69 -39.61 -0.38 -2.58 16 13 C -0.04 -1.03 5.07 -104.59 -0.53 -1.56 16 14 C 0.05 1.28 5.10 -29.03 -0.15 1.13 16 15 C -0.51 -14.68 9.09 -34.44 -0.31 -14.99 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.11 -2.39 9.69 -39.61 -0.38 -2.77 16 24 C -0.12 -2.37 8.70 -39.39 -0.34 -2.71 16 25 S 1.24 6.24 12.99 -107.50 -1.40 4.84 16 26 C -0.49 -1.81 10.14 101.05 1.02 -0.79 16 27 O -0.83 -10.83 15.80 -35.23 -0.56 -11.39 16 28 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.04 6.51 -51.93 -0.34 -0.30 16 30 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 1.18 5.58 -51.93 -0.29 0.89 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.39 2.38 8.49 -40.82 -0.35 2.03 16 36 H 0.40 3.79 8.84 -40.82 -0.36 3.43 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 43 H 0.13 2.67 6.22 -52.49 -0.33 2.35 16 44 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.11 0.08 6.90 -51.92 -0.36 -0.28 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -41.03 391.26 -10.48 -51.51 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.05 Total: 2.61 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -2.72 Total: -15.27 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: 0.30 Total: -43.74 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.48 Total: -22.83 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.40 Total: 4.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.03 -10.48 -51.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932573057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.420 kcal (2) G-P(sol) polarization free energy of solvation -41.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds