Wall clock time and date at job start Tue Mar 31 2020 20:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47318 * 2 1 4 4 C 1.52999 * 109.47379 * 119.99972 * 2 1 3 5 5 C 1.53004 * 109.46899 * 184.99952 * 4 2 1 6 6 N 1.46504 * 109.46523 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99446 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00266 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99757 * 180.02562 * 7 6 5 10 10 C 1.39943 * 119.99581 * 175.37921 * 9 7 6 11 11 C 1.38871 * 120.06468 * 214.81096 * 10 9 7 12 12 C 1.38118 * 119.92652 * 179.77247 * 11 10 9 13 13 C 1.38285 * 120.06820 * 0.50264 * 12 11 10 14 14 C 1.50703 * 119.92512 * 179.72249 * 13 12 11 15 15 C 1.50698 * 109.47306 * 270.02461 * 14 13 12 16 16 H 1.08002 * 119.99897 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99756 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47483 * 90.00192 * 19 17 15 21 21 H 1.48508 * 109.46820 * 209.99991 * 19 17 15 22 22 H 1.48496 * 109.47316 * 329.99638 * 19 17 15 23 23 C 1.38272 * 120.14199 * 359.75514 * 13 12 11 24 24 C 1.38113 * 120.07195 * 359.97438 * 23 13 12 25 25 S 1.81397 * 109.46977 * 240.00280 * 2 1 3 26 26 C 1.81404 * 103.00258 * 54.99756 * 25 2 1 27 27 O 1.42104 * 109.47172 * 171.38531 * 25 2 1 28 28 H 1.09004 * 109.46632 * 299.99744 * 1 2 3 29 29 H 1.08991 * 109.47419 * 60.00000 * 1 2 3 30 30 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46790 * 65.00209 * 4 2 1 32 32 H 1.08995 * 109.47203 * 304.99697 * 4 2 1 33 33 H 1.08995 * 109.46985 * 299.99879 * 5 4 2 34 34 H 1.08993 * 109.47194 * 60.00491 * 5 4 2 35 35 H 0.96997 * 120.00532 * 0.02562 * 6 5 4 36 36 H 0.97000 * 120.00077 * 355.37996 * 9 7 6 37 37 H 1.08001 * 120.03909 * 0.02562 * 11 10 9 38 38 H 1.07999 * 119.96217 * 180.25871 * 12 11 10 39 39 H 1.08999 * 109.46950 * 30.02939 * 14 13 12 40 40 H 1.09001 * 109.46866 * 150.02817 * 14 13 12 41 41 H 0.96994 * 119.99792 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.96655 * 180.02562 * 23 13 12 43 43 H 1.07995 * 120.04063 * 179.97438 * 24 23 13 44 44 H 1.09002 * 109.46605 * 59.99728 * 26 25 2 45 45 H 1.08993 * 109.47310 * 180.02562 * 26 25 2 46 46 H 1.08999 * 109.46875 * 300.00169 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3135 6 7 4.0533 -1.3044 2.5094 7 6 5.3742 -1.3397 2.7750 8 8 6.1604 -0.7977 2.0224 9 7 5.8236 -1.9760 3.8749 10 6 7.1995 -2.0965 4.1004 11 6 7.7080 -3.2383 4.7056 12 6 9.0669 -3.3562 4.9225 13 6 9.9197 -2.3343 4.5471 14 6 11.4012 -2.4637 4.7910 15 6 11.7371 -1.9064 6.1503 16 1 10.9559 -1.4995 6.7752 17 6 13.0418 -1.9158 6.5960 18 7 13.9931 -2.4116 5.8352 19 14 13.4581 -1.2256 8.2812 20 1 13.3653 -2.3062 9.2955 21 1 14.8388 -0.6791 8.2649 22 1 12.5011 -0.1426 8.6227 23 6 9.4158 -1.1939 3.9492 24 6 8.0586 -1.0722 3.7245 25 16 2.1346 -0.8551 -1.4812 26 6 1.3147 0.0375 -2.8309 27 8 3.5414 -0.6838 -1.5859 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2617 2.1369 33 1 3.9994 -1.0727 0.4258 34 1 3.8532 0.4370 1.3573 35 1 3.4261 -1.7365 3.1101 36 1 5.1934 -2.3504 4.5101 37 1 7.0420 -4.0350 5.0026 38 1 9.4634 -4.2457 5.3893 39 1 11.6859 -3.5150 4.7488 40 1 11.9450 -1.9090 4.0264 41 1 14.9110 -2.4179 6.1486 42 1 10.0844 -0.3977 3.6569 43 1 7.6656 -0.1811 3.2578 44 1 1.6085 1.0868 -2.8037 45 1 1.6089 -0.3979 -3.7858 46 1 0.2338 -0.0404 -2.7141 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932573057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:22 Heat of formation + Delta-G solvation = -80.305688 kcal Electronic energy + Delta-G solvation = -25676.733215 eV Core-core repulsion = 21884.519896 eV Total energy + Delta-G solvation = -3792.213320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.68903 -39.83623 -37.49081 -36.80832 -36.23219 -35.12673 -34.70080 -32.23834 -31.76882 -30.54945 -29.16605 -28.16229 -25.41343 -24.35529 -23.78214 -22.74846 -22.37166 -21.59607 -19.57568 -18.61450 -18.48268 -18.24109 -17.52143 -16.93101 -16.60319 -16.49590 -16.01046 -15.89459 -15.74750 -15.47402 -15.03396 -14.69714 -14.62364 -14.54293 -14.42630 -14.26604 -13.68028 -13.60394 -13.40961 -13.31976 -13.28087 -13.15880 -12.65503 -12.61874 -12.49417 -12.48083 -12.15479 -12.07663 -11.95249 -11.70636 -11.55857 -11.28451 -10.92359 -10.85158 -10.60044 -10.18639 -9.76704 -9.18028 -8.85315 -8.17973 -6.33008 0.47833 0.57154 0.64422 1.39189 1.41219 1.50581 1.52655 1.74937 2.01599 2.40359 2.89342 3.00528 3.10869 3.14246 3.70410 3.87581 4.05514 4.09569 4.16297 4.26228 4.37061 4.38310 4.48341 4.52880 4.57349 4.65564 4.66741 4.73624 4.94476 4.99415 5.06977 5.12825 5.14413 5.23070 5.30066 5.33239 5.35793 5.41994 5.49479 5.50642 5.62074 5.75744 5.96282 6.08281 6.12911 6.26043 6.79469 7.00152 7.35247 7.46520 8.90066 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030210 B = 0.001708 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.609730 B =16387.516836 C =16714.150725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.404 4.404 3 H 0.070 0.930 4 C -0.097 4.097 5 C 0.112 3.888 6 N -0.718 5.718 7 C 0.692 3.308 8 O -0.624 6.624 9 N -0.663 5.663 10 C 0.135 3.865 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.076 4.076 14 C 0.057 3.943 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.969 3.031 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.123 4.123 24 C -0.128 4.128 25 S 1.269 4.731 26 C -0.485 4.485 27 O -0.924 6.924 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.032 0.968 35 H 0.420 0.580 36 H 0.427 0.573 37 H 0.165 0.835 38 H 0.131 0.869 39 H 0.009 0.991 40 H -0.004 1.004 41 H 0.265 0.735 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.064 0.936 45 H 0.107 0.893 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.800 -1.389 -10.535 42.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.523 4.523 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.012 4.012 6 N -0.376 5.376 7 C 0.392 3.608 8 O -0.503 6.503 9 N -0.313 5.313 10 C 0.041 3.959 11 C -0.144 4.144 12 C -0.130 4.130 13 C -0.077 4.077 14 C 0.020 3.980 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.793 3.207 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.142 4.142 24 C -0.148 4.148 25 S 1.470 4.530 26 C -0.644 4.644 27 O -0.920 6.920 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.258 0.742 36 H 0.266 0.734 37 H 0.182 0.818 38 H 0.149 0.851 39 H 0.027 0.973 40 H 0.015 0.985 41 H 0.074 0.926 42 H 0.123 0.877 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -39.356 -1.682 -11.331 40.989 hybrid contribution 1.504 2.738 0.877 3.245 sum -37.852 1.056 -10.454 39.283 Atomic orbital electron populations 1.21627 0.87643 1.05599 1.03712 1.27318 1.06061 1.07696 1.11260 0.91150 1.21557 0.89969 1.04071 0.97994 1.21651 0.96774 0.95836 0.86975 1.44767 1.04376 1.59883 1.28564 1.16249 0.83629 0.79581 0.81315 1.90959 1.56263 1.51538 1.51585 1.42160 1.05247 1.59843 1.24037 1.17373 0.82731 0.94334 1.01499 1.21036 0.95041 0.96220 1.02116 1.20995 0.92962 0.98864 1.00160 1.20414 0.97232 0.94310 0.95728 1.18094 0.87911 0.96093 0.95899 1.21390 0.93424 1.40110 1.01644 0.92592 1.25975 0.96148 0.95619 1.01856 1.70095 1.01177 1.46870 1.38969 0.85392 0.77417 0.78848 0.79056 1.19201 1.20616 1.19220 1.20899 0.94976 0.97891 1.00433 1.21117 0.92943 0.99115 1.01674 1.69471 0.87093 1.09926 0.86506 1.27639 1.13045 1.09267 1.14444 1.93117 1.29852 1.83909 1.85108 0.91433 0.90832 0.87653 0.86181 0.88078 0.92207 0.94940 0.74167 0.73412 0.81757 0.85114 0.97255 0.98540 0.92592 0.87667 0.86332 0.91665 0.87391 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.18 8.94 71.98 0.64 0.83 16 2 C -0.40 -2.68 2.89 30.59 0.09 -2.59 16 3 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.10 -0.67 4.80 30.60 0.15 -0.53 16 5 C 0.11 2.29 5.34 86.38 0.46 2.75 16 6 N -0.72 -13.29 5.56 -478.53 -2.66 -15.95 16 7 C 0.69 20.38 8.41 179.05 1.51 21.88 16 8 O -0.62 -26.26 13.78 -3.98 -0.05 -26.31 16 9 N -0.66 -16.51 5.34 -317.17 -1.70 -18.21 16 10 C 0.14 4.60 6.30 38.15 0.24 4.84 16 11 C -0.12 -3.91 9.97 22.39 0.22 -3.68 16 12 C -0.11 -4.42 9.69 22.25 0.22 -4.20 16 13 C -0.08 -3.66 5.07 -19.84 -0.10 -3.76 16 14 C 0.06 3.24 5.10 29.10 0.15 3.39 16 15 C -0.53 -31.43 9.09 25.60 0.23 -31.19 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -58.00 13.29 21.45 0.28 -57.71 16 19 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 23 C -0.12 -5.73 9.69 22.25 0.22 -5.51 16 24 C -0.13 -5.35 8.70 22.39 0.19 -5.15 16 25 S 1.27 12.14 12.99 -56.49 -0.73 11.41 16 26 C -0.48 -2.82 10.14 113.37 1.15 -1.68 16 27 O -0.92 -26.06 15.80 -148.98 -2.35 -28.42 16 28 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.07 -0.22 6.51 -2.39 -0.02 -0.24 16 30 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 1.66 5.58 -2.39 -0.01 1.65 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.42 3.38 8.49 -92.71 -0.79 2.59 16 36 H 0.43 6.13 8.84 -92.71 -0.82 5.31 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 38 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.01 0.54 8.08 -2.39 -0.02 0.52 16 40 H 0.00 -0.23 8.08 -2.39 -0.02 -0.25 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.12 5.19 6.22 -2.91 -0.02 5.17 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.15 -0.37 6.90 -2.39 -0.02 -0.39 16 Total: -1.00 -98.49 391.26 0.03 -98.46 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -0.61 Total: 13.10 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.83 Total: -24.04 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -4.07 Total: -91.87 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -2.41 Total: -54.73 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 16 Polarization: 12.14 SS G_CDS: -0.73 Total: 11.41 kcal Total: -98.49 0.03 -98.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932573057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.153 kcal (2) G-P(sol) polarization free energy of solvation -98.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds