Wall clock time and date at job start Tue Mar 31 2020 20:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46884 * 240.00103 * 2 1 3 5 5 C 1.52998 * 109.47125 * 174.99846 * 4 2 1 6 6 S 1.81401 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.81399 * 103.00249 * 180.02562 * 6 5 4 8 8 O 1.42096 * 109.47292 * 63.61190 * 6 5 4 9 9 N 1.46499 * 109.47470 * 120.00017 * 2 1 3 10 10 C 1.34776 * 119.99944 * 275.00209 * 9 2 1 11 11 O 1.21587 * 119.99941 * 359.97438 * 10 9 2 12 12 N 1.34772 * 119.99693 * 180.02562 * 10 9 2 13 13 C 1.39946 * 119.99951 * 174.68472 * 12 10 9 14 14 C 1.38866 * 120.07077 * 326.56324 * 13 12 10 15 15 C 1.38111 * 119.93079 * 179.76669 * 14 13 12 16 16 C 1.38287 * 120.07112 * 0.50876 * 15 14 13 17 17 C 1.50694 * 119.93176 * 179.72322 * 16 15 14 18 18 C 1.50703 * 109.46737 * 270.02205 * 17 16 15 19 19 H 1.07999 * 120.00464 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99920 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99747 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47439 * 90.00078 * 22 20 18 24 24 H 1.48500 * 109.46847 * 209.99804 * 22 20 18 25 25 H 1.48498 * 109.47533 * 329.99731 * 22 20 18 26 26 C 1.38281 * 120.13526 * 359.74482 * 16 15 14 27 27 C 1.38112 * 120.07660 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46826 * 300.00378 * 1 2 3 30 30 H 1.09002 * 109.47017 * 59.99534 * 1 2 3 31 31 H 1.09000 * 109.47459 * 295.00225 * 4 2 1 32 32 H 1.09007 * 109.47412 * 54.99758 * 4 2 1 33 33 H 1.09000 * 109.47508 * 299.99757 * 5 4 2 34 34 H 1.09000 * 109.46710 * 60.00283 * 5 4 2 35 35 H 1.08999 * 109.47052 * 59.99711 * 7 6 5 36 36 H 1.08989 * 109.47461 * 179.97438 * 7 6 5 37 37 H 1.09008 * 109.46686 * 299.99959 * 7 6 5 38 38 H 0.96998 * 119.99750 * 94.99013 * 9 2 1 39 39 H 0.97004 * 120.00209 * 354.67718 * 12 10 9 40 40 H 1.07998 * 120.03307 * 0.02562 * 14 13 12 41 41 H 1.08000 * 119.96695 * 180.25072 * 15 14 13 42 42 H 1.09000 * 109.47330 * 30.01724 * 17 16 15 43 43 H 1.09004 * 109.47204 * 150.02764 * 17 16 15 44 44 H 0.97002 * 119.99608 * 179.97438 * 21 20 18 45 45 H 1.08009 * 119.96251 * 179.97438 * 26 16 15 46 46 H 1.07991 * 120.03955 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 16 4.1693 -1.4677 -2.7954 7 6 5.9655 -1.2340 -2.6970 8 8 3.6692 -0.8164 -3.9550 9 7 2.0184 -0.6906 1.1961 10 6 2.1472 -0.0182 2.3571 11 8 1.8584 1.1616 2.4116 12 7 2.5970 -0.6535 3.4573 13 6 2.8365 0.0674 4.6327 14 6 3.2924 1.3773 4.5649 15 6 3.5233 2.0876 5.7266 16 6 3.3109 1.4922 6.9566 17 6 3.5698 2.2681 8.2222 18 6 4.9998 2.0652 8.6522 19 1 5.6555 1.4369 8.0676 20 6 5.4712 2.6818 9.7919 21 7 6.7190 2.5044 10.1673 22 14 4.3369 3.7679 10.8033 23 1 3.6507 2.9452 11.8316 24 1 5.1328 4.8301 11.4694 25 1 3.3255 4.3921 9.9130 26 6 2.8620 0.1863 7.0275 27 6 2.6247 -0.5279 5.8694 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3575 34 1 3.9994 -1.0729 -0.4261 35 1 6.3397 -1.6787 -1.7749 36 1 6.4418 -1.7149 -3.5512 37 1 6.1941 -0.1682 -2.7054 38 1 2.2490 -1.6318 1.1526 39 1 2.7546 -1.6104 3.4346 40 1 3.4623 1.8415 3.6047 41 1 3.8740 3.1077 5.6746 42 1 3.3917 3.3282 8.0415 43 1 2.9009 1.9160 9.0076 44 1 7.0507 2.9384 10.9689 45 1 2.6974 -0.2761 7.9896 46 1 2.2745 -1.5479 5.9255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932574084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:37 Heat of formation + Delta-G solvation = -49.274823 kcal Electronic energy + Delta-G solvation = -25885.658729 eV Core-core repulsion = 22094.791009 eV Total energy + Delta-G solvation = -3790.867720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.62656 -38.64408 -36.88195 -36.11396 -34.83589 -33.15419 -32.50699 -30.84276 -30.32952 -29.98985 -29.35424 -26.93610 -24.54975 -23.23570 -22.37866 -21.65457 -20.90052 -20.09729 -18.61818 -17.92412 -17.38957 -16.75245 -16.34861 -15.85819 -15.47137 -15.27131 -15.01616 -14.87470 -14.65773 -14.10846 -14.05694 -13.94749 -13.71997 -13.34059 -13.22981 -13.03601 -12.86677 -12.59215 -12.42949 -12.38830 -12.33323 -12.00816 -11.67731 -11.62752 -11.53804 -11.34267 -10.84972 -10.50556 -10.47510 -10.29355 -10.15130 -9.92637 -9.56252 -9.36709 -9.26851 -8.72395 -8.57077 -8.31844 -7.36995 -6.06383 -4.04993 1.04308 1.90517 2.03413 2.13162 2.51544 3.14982 3.29809 3.31646 3.37776 3.41566 4.02786 4.25045 4.41298 4.42962 4.46388 4.48404 4.65666 4.76934 4.97197 5.08589 5.13904 5.25518 5.27969 5.38894 5.41908 5.45701 5.52335 5.54714 5.67672 5.88155 5.93930 5.99566 6.02339 6.14254 6.28066 6.53540 6.59718 6.85674 6.97887 7.01619 7.07437 7.11099 7.61537 7.63568 7.73745 7.85796 8.48536 8.51332 8.99129 9.54315 11.06534 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.001917 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.689394 B =14605.277183 C =15429.588874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.165 3.835 3 H 0.089 0.911 4 C -0.106 4.106 5 C -0.449 4.449 6 S 1.240 4.760 7 C -0.489 4.489 8 O -0.853 6.853 9 N -0.740 5.740 10 C 0.701 3.299 11 O -0.571 6.571 12 N -0.682 5.682 13 C 0.129 3.871 14 C -0.117 4.117 15 C -0.104 4.104 16 C -0.041 4.041 17 C 0.014 3.986 18 C -0.511 4.511 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.105 4.105 27 C -0.145 4.145 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.395 0.605 39 H 0.401 0.599 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.028 0.972 43 H 0.023 0.977 44 H 0.264 0.736 45 H 0.122 0.878 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.585 -15.467 -24.580 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 H 0.107 0.893 4 C -0.145 4.145 5 C -0.586 4.586 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.397 5.397 10 C 0.402 3.598 11 O -0.447 6.447 12 N -0.329 5.329 13 C 0.035 3.965 14 C -0.137 4.137 15 C -0.123 4.123 16 C -0.042 4.042 17 C -0.023 4.023 18 C -0.549 4.549 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.123 4.123 27 C -0.166 4.166 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.229 0.771 39 H 0.236 0.764 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.140 0.860 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.218 -14.777 -25.190 30.624 hybrid contribution 0.513 1.812 0.698 2.008 sum -8.705 -12.965 -24.492 29.047 Atomic orbital electron populations 1.22225 0.95133 1.02234 1.02921 1.20791 0.93774 0.97333 0.82195 0.89288 1.21500 0.92400 1.02092 0.98504 1.27703 1.03115 1.11020 1.16730 1.70386 0.85597 1.15759 0.84396 1.27629 1.21092 1.07406 1.08591 1.93143 1.73755 1.77369 1.40622 1.45197 1.72129 1.13572 1.08761 1.15946 0.78272 0.85330 0.80287 1.90965 1.55540 1.14197 1.84018 1.42492 1.69303 1.11217 1.09916 1.17289 1.02186 0.92978 0.84007 1.20987 1.00015 0.93665 0.99020 1.20957 0.99814 1.00141 0.91378 1.20279 0.93647 0.94173 0.96077 1.18803 0.98065 0.95059 0.90370 1.20946 0.93937 1.30350 1.09657 0.90820 1.25009 0.94980 0.96182 0.97189 1.69902 1.14853 1.44179 1.25004 0.86803 0.81190 0.80838 0.80688 1.20186 1.21301 1.18892 1.20835 0.99946 0.94243 0.97311 1.20692 1.04673 1.00105 0.91121 0.92335 0.91618 0.91630 0.90035 0.89691 0.89320 0.86353 0.86793 0.87596 0.90044 0.77137 0.76428 0.85729 0.86112 0.95415 0.95854 0.92651 0.85953 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.48 37.16 0.35 -0.90 16 2 C 0.17 1.25 2.57 -67.93 -0.17 1.08 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 4 C -0.11 -0.52 4.76 -26.73 -0.13 -0.64 16 5 C -0.45 -2.10 5.81 37.16 0.22 -1.88 16 6 S 1.24 5.09 13.80 -107.50 -1.48 3.61 16 7 C -0.49 -2.03 10.74 101.05 1.09 -0.94 16 8 O -0.85 -9.78 18.14 -35.23 -0.64 -10.42 16 9 N -0.74 -5.50 4.53 -58.68 -0.27 -5.77 16 10 C 0.70 8.61 8.27 -86.92 -0.72 7.90 16 11 O -0.57 -9.70 13.70 5.29 0.07 -9.63 16 12 N -0.68 -7.87 5.35 -14.22 -0.08 -7.95 16 13 C 0.13 2.03 6.28 -83.68 -0.53 1.51 16 14 C -0.12 -2.13 8.65 -39.40 -0.34 -2.47 16 15 C -0.10 -2.09 9.69 -39.61 -0.38 -2.48 16 16 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 17 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 18 C -0.51 -14.47 9.65 -34.44 -0.33 -14.81 16 19 H 0.07 2.28 7.98 -52.49 -0.42 1.86 16 20 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 22 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 26 C -0.10 -1.95 9.69 -39.61 -0.38 -2.33 16 27 C -0.15 -2.27 9.96 -39.39 -0.39 -2.66 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.12 0.34 7.75 -51.92 -0.40 -0.07 16 35 H 0.11 0.22 8.14 -51.92 -0.42 -0.20 16 36 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.39 1.46 8.62 -40.82 -0.35 1.11 16 39 H 0.40 3.00 8.83 -40.82 -0.36 2.64 16 40 H 0.12 2.28 6.42 -52.49 -0.34 1.95 16 41 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 42 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 43 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.12 2.15 8.06 -52.48 -0.42 1.72 16 46 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 395.57 15.07 5.96 5.96 Total: -1.00 -40.32 395.57 -10.07 -50.38 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.27 Total: 1.73 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -2.47 Total: -17.96 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.43 Total: -40.48 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.57 Total: -20.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 16 Polarization: 5.09 SS G_CDS: -1.48 Total: 3.61 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -40.32 -10.07 -50.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.107 kcal (2) G-P(sol) polarization free energy of solvation -40.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds