Wall clock time and date at job start Tue Mar 31 2020 20:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46884 * 240.00103 * 2 1 3 5 5 C 1.52998 * 109.47125 * 174.99846 * 4 2 1 6 6 S 1.81401 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.81399 * 103.00249 * 180.02562 * 6 5 4 8 8 O 1.42096 * 109.47292 * 63.61190 * 6 5 4 9 9 N 1.46499 * 109.47470 * 120.00017 * 2 1 3 10 10 C 1.34776 * 119.99944 * 275.00209 * 9 2 1 11 11 O 1.21587 * 119.99941 * 359.97438 * 10 9 2 12 12 N 1.34772 * 119.99693 * 180.02562 * 10 9 2 13 13 C 1.39946 * 119.99951 * 174.68472 * 12 10 9 14 14 C 1.38866 * 120.07077 * 326.56324 * 13 12 10 15 15 C 1.38111 * 119.93079 * 179.76669 * 14 13 12 16 16 C 1.38287 * 120.07112 * 0.50876 * 15 14 13 17 17 C 1.50694 * 119.93176 * 179.72322 * 16 15 14 18 18 C 1.50703 * 109.46737 * 270.02205 * 17 16 15 19 19 H 1.07999 * 120.00464 * 359.97438 * 18 17 16 20 20 C 1.37887 * 119.99824 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99920 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 119.99747 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47439 * 90.00078 * 22 20 18 24 24 H 1.48500 * 109.46847 * 209.99804 * 22 20 18 25 25 H 1.48498 * 109.47533 * 329.99731 * 22 20 18 26 26 C 1.38281 * 120.13526 * 359.74482 * 16 15 14 27 27 C 1.38112 * 120.07660 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47370 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46826 * 300.00378 * 1 2 3 30 30 H 1.09002 * 109.47017 * 59.99534 * 1 2 3 31 31 H 1.09000 * 109.47459 * 295.00225 * 4 2 1 32 32 H 1.09007 * 109.47412 * 54.99758 * 4 2 1 33 33 H 1.09000 * 109.47508 * 299.99757 * 5 4 2 34 34 H 1.09000 * 109.46710 * 60.00283 * 5 4 2 35 35 H 1.08999 * 109.47052 * 59.99711 * 7 6 5 36 36 H 1.08989 * 109.47461 * 179.97438 * 7 6 5 37 37 H 1.09008 * 109.46686 * 299.99959 * 7 6 5 38 38 H 0.96998 * 119.99750 * 94.99013 * 9 2 1 39 39 H 0.97004 * 120.00209 * 354.67718 * 12 10 9 40 40 H 1.07998 * 120.03307 * 0.02562 * 14 13 12 41 41 H 1.08000 * 119.96695 * 180.25072 * 15 14 13 42 42 H 1.09000 * 109.47330 * 30.01724 * 17 16 15 43 43 H 1.09004 * 109.47204 * 150.02764 * 17 16 15 44 44 H 0.97002 * 119.99608 * 179.97438 * 21 20 18 45 45 H 1.08009 * 119.96251 * 179.97438 * 26 16 15 46 46 H 1.07991 * 120.03955 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 16 4.1693 -1.4677 -2.7954 7 6 5.9655 -1.2340 -2.6970 8 8 3.6692 -0.8164 -3.9550 9 7 2.0184 -0.6906 1.1961 10 6 2.1472 -0.0182 2.3571 11 8 1.8584 1.1616 2.4116 12 7 2.5970 -0.6535 3.4573 13 6 2.8365 0.0674 4.6327 14 6 3.2924 1.3773 4.5649 15 6 3.5233 2.0876 5.7266 16 6 3.3109 1.4922 6.9566 17 6 3.5698 2.2681 8.2222 18 6 4.9998 2.0652 8.6522 19 1 5.6555 1.4369 8.0676 20 6 5.4712 2.6818 9.7919 21 7 6.7190 2.5044 10.1673 22 14 4.3369 3.7679 10.8033 23 1 3.6507 2.9452 11.8316 24 1 5.1328 4.8301 11.4694 25 1 3.3255 4.3921 9.9130 26 6 2.8620 0.1863 7.0275 27 6 2.6247 -0.5279 5.8694 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3575 34 1 3.9994 -1.0729 -0.4261 35 1 6.3397 -1.6787 -1.7749 36 1 6.4418 -1.7149 -3.5512 37 1 6.1941 -0.1682 -2.7054 38 1 2.2490 -1.6318 1.1526 39 1 2.7546 -1.6104 3.4346 40 1 3.4623 1.8415 3.6047 41 1 3.8740 3.1077 5.6746 42 1 3.3917 3.3282 8.0415 43 1 2.9009 1.9160 9.0076 44 1 7.0507 2.9384 10.9689 45 1 2.6974 -0.2761 7.9896 46 1 2.2745 -1.5479 5.9255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932574084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:36 Heat of formation + Delta-G solvation = -79.724651 kcal Electronic energy + Delta-G solvation = -25886.979133 eV Core-core repulsion = 22094.791009 eV Total energy + Delta-G solvation = -3792.188124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66999 -39.89454 -37.72180 -36.79868 -36.13951 -34.94255 -33.52381 -32.27100 -31.74232 -30.78140 -29.72679 -28.57505 -25.29456 -24.64639 -23.81766 -22.73543 -21.71819 -21.52744 -19.58398 -18.94781 -18.50565 -18.33624 -17.19630 -16.62066 -16.51383 -16.30448 -15.93554 -15.84260 -15.67111 -15.54944 -15.16422 -14.85267 -14.58036 -14.33110 -14.29637 -14.21801 -13.97508 -13.76480 -13.54734 -13.45673 -13.28147 -13.07564 -12.84677 -12.58228 -12.52542 -12.18919 -12.12245 -11.98305 -11.89523 -11.73299 -11.60732 -11.25397 -11.07184 -10.90807 -10.77012 -10.12385 -9.73493 -9.20151 -8.74604 -8.28385 -6.32636 0.51209 0.60267 0.66582 1.36783 1.39171 1.51063 1.60824 1.76928 2.11993 2.36476 2.88689 3.02930 3.05740 3.24546 3.76376 3.91165 4.03902 4.07498 4.17711 4.26016 4.34315 4.38669 4.48516 4.49677 4.60700 4.67042 4.72325 4.74898 4.79744 4.90047 5.03033 5.07559 5.09854 5.14241 5.16945 5.28452 5.32529 5.42352 5.47840 5.54979 5.58841 5.68435 6.02885 6.06904 6.20525 6.32079 6.73256 7.09768 7.30437 7.56486 8.87827 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.001917 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.689394 B =14605.277183 C =15429.588874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.166 3.834 3 H 0.053 0.947 4 C -0.103 4.103 5 C -0.451 4.451 6 S 1.308 4.692 7 C -0.494 4.494 8 O -0.929 6.929 9 N -0.713 5.713 10 C 0.697 3.303 11 O -0.621 6.621 12 N -0.666 5.666 13 C 0.144 3.856 14 C -0.128 4.128 15 C -0.120 4.120 16 C -0.078 4.078 17 C 0.021 3.979 18 C -0.516 4.516 19 H 0.030 0.970 20 C 0.007 3.993 21 N -0.948 5.948 22 Si 0.949 3.051 23 H -0.261 1.261 24 H -0.284 1.284 25 H -0.251 1.251 26 C -0.111 4.111 27 C -0.131 4.131 28 H 0.083 0.917 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.419 0.581 39 H 0.426 0.574 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.267 0.733 45 H 0.132 0.868 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.235 -18.456 -25.068 32.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.059 3.941 3 H 0.071 0.929 4 C -0.141 4.141 5 C -0.588 4.588 6 S 1.509 4.491 7 C -0.653 4.653 8 O -0.925 6.925 9 N -0.371 5.371 10 C 0.398 3.602 11 O -0.501 6.501 12 N -0.316 5.316 13 C 0.049 3.951 14 C -0.149 4.149 15 C -0.139 4.139 16 C -0.079 4.079 17 C -0.017 4.017 18 C -0.554 4.554 19 H 0.049 0.951 20 C -0.190 4.190 21 N -0.589 5.589 22 Si 0.772 3.228 23 H -0.186 1.186 24 H -0.210 1.210 25 H -0.175 1.175 26 C -0.129 4.129 27 C -0.151 4.151 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.258 0.742 39 H 0.265 0.735 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.150 0.850 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.880 -17.853 -25.737 33.158 hybrid contribution 1.105 2.642 0.722 2.953 sum -9.775 -15.211 -25.015 30.865 Atomic orbital electron populations 1.22189 0.94815 1.03460 1.01703 1.20779 0.94008 0.96120 0.83164 0.92860 1.21512 0.92192 1.04183 0.96252 1.27756 1.03423 1.09634 1.18025 1.69510 0.84477 1.13399 0.81742 1.27686 1.20687 1.06330 1.10559 1.93008 1.75951 1.78847 1.44644 1.44941 1.70597 1.14526 1.07012 1.16161 0.77974 0.84828 0.81264 1.90952 1.57561 1.16731 1.84836 1.42255 1.68748 1.12179 1.08412 1.17346 0.99770 0.92170 0.85794 1.20983 1.00894 0.95086 0.97909 1.20930 1.00814 1.00136 0.92048 1.20148 0.97034 0.95709 0.95001 1.18644 0.95351 0.95431 0.92228 1.21166 0.95725 1.29330 1.09154 0.95141 1.25968 0.96621 0.97826 0.98606 1.70053 1.17048 1.45818 1.25949 0.85672 0.79161 0.78845 0.79102 1.18594 1.20969 1.17457 1.21031 0.99528 0.93305 0.99079 1.21025 1.02803 1.01703 0.89593 0.89794 0.94713 0.91046 0.85707 0.90791 0.92060 0.83731 0.83838 0.86994 0.92162 0.74248 0.73495 0.86363 0.87274 0.95834 0.94827 0.92411 0.85029 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 2 C 0.17 2.25 2.57 44.99 0.12 2.37 16 3 H 0.05 1.14 7.58 -2.39 -0.02 1.12 16 4 C -0.10 -0.74 4.76 30.59 0.15 -0.60 16 5 C -0.45 -3.29 5.81 71.98 0.42 -2.88 16 6 S 1.31 8.42 13.80 -56.49 -0.78 7.64 16 7 C -0.49 -3.17 10.74 113.37 1.22 -1.96 16 8 O -0.93 -21.11 18.14 -148.98 -2.70 -23.81 16 9 N -0.71 -8.48 4.53 -457.82 -2.08 -10.55 16 10 C 0.70 15.74 8.27 179.06 1.48 17.22 16 11 O -0.62 -21.07 13.70 -3.99 -0.05 -21.13 16 12 N -0.67 -13.20 5.35 -317.18 -1.70 -14.90 16 13 C 0.14 4.25 6.28 38.15 0.24 4.49 16 14 C -0.13 -4.70 8.65 22.39 0.19 -4.51 16 15 C -0.12 -5.01 9.69 22.25 0.22 -4.79 16 16 C -0.08 -3.37 5.07 -19.84 -0.10 -3.47 16 17 C 0.02 1.01 4.17 29.10 0.12 1.13 16 18 C -0.52 -30.21 9.65 25.60 0.25 -29.97 16 19 H 0.03 1.98 7.98 -2.91 -0.02 1.96 16 20 C 0.01 0.39 5.47 84.66 0.46 0.86 16 21 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 22 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 26 C -0.11 -3.98 9.69 22.25 0.22 -3.76 16 27 C -0.13 -3.68 9.96 22.39 0.22 -3.46 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 29 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.12 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.14 0.27 7.75 -2.39 -0.02 0.25 16 35 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.11 0.64 8.14 -2.40 -0.02 0.62 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.42 1.01 8.62 -92.71 -0.80 0.21 16 39 H 0.43 4.26 8.83 -92.71 -0.82 3.44 16 40 H 0.12 4.46 6.42 -2.91 -0.02 4.44 16 41 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 42 H 0.02 1.15 7.14 -2.39 -0.02 1.13 16 43 H 0.03 1.55 7.51 -2.39 -0.02 1.53 16 44 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 45 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 46 H 0.16 3.04 8.06 -2.92 -0.02 3.02 16 Total: -1.00 -94.45 395.57 0.07 -94.38 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.68 Total: 12.16 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 5.88 Total: -30.85 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -3.47 Total: -84.80 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.76 Total: -44.94 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 16 Polarization: 8.42 SS G_CDS: -0.78 Total: 7.64 kcal Total: -94.45 0.07 -94.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.656 kcal (2) G-P(sol) polarization free energy of solvation -94.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds