Wall clock time and date at job start Tue Mar 31 2020 20:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47016 * 2 1 4 4 C 1.52994 * 109.47471 * 120.00026 * 2 1 3 5 5 C 1.52994 * 109.47550 * 184.99707 * 4 2 1 6 6 S 1.81399 * 109.47458 * 180.02562 * 5 4 2 7 7 C 1.81402 * 102.99992 * 180.02562 * 6 5 4 8 8 O 1.42101 * 109.46941 * 63.61466 * 6 5 4 9 9 N 1.46500 * 109.47019 * 240.00478 * 2 1 3 10 10 C 1.34782 * 120.00559 * 84.99786 * 9 2 1 11 11 O 1.21591 * 119.99276 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00284 * 179.97438 * 10 9 2 13 13 C 1.39944 * 119.99701 * 175.37608 * 12 10 9 14 14 C 1.38863 * 120.06872 * 214.81277 * 13 12 10 15 15 C 1.38115 * 119.92857 * 179.77615 * 14 13 12 16 16 C 1.38276 * 120.06907 * 0.50594 * 15 14 13 17 17 C 1.50699 * 119.93064 * 179.72392 * 16 15 14 18 18 C 1.50697 * 109.47425 * 270.02127 * 17 16 15 19 19 H 1.08000 * 119.99628 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00006 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00434 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00035 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47014 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47211 * 119.99768 * 22 20 18 25 25 H 1.48497 * 109.47191 * 239.99892 * 22 20 18 26 26 C 1.38281 * 120.14169 * 359.74748 * 16 15 14 27 27 C 1.38118 * 120.07038 * 0.02562 * 26 16 15 28 28 H 1.09007 * 109.47612 * 59.99921 * 1 2 3 29 29 H 1.09004 * 109.47412 * 299.99721 * 1 2 3 30 30 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47096 * 305.00526 * 4 2 1 32 32 H 1.09005 * 109.46749 * 64.99986 * 4 2 1 33 33 H 1.09004 * 109.47634 * 300.00323 * 5 4 2 34 34 H 1.09000 * 109.47187 * 60.00036 * 5 4 2 35 35 H 1.08990 * 109.47139 * 60.00376 * 7 6 5 36 36 H 1.09001 * 109.46688 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47068 * 299.99998 * 7 6 5 38 38 H 0.97001 * 119.99834 * 264.99669 * 9 2 1 39 39 H 0.96996 * 119.99625 * 355.37804 * 12 10 9 40 40 H 1.07999 * 120.03768 * 359.97438 * 14 13 12 41 41 H 1.07997 * 119.96689 * 180.25572 * 15 14 13 42 42 H 1.08999 * 109.46967 * 30.02404 * 17 16 15 43 43 H 1.09000 * 109.47289 * 150.01760 * 17 16 15 44 44 H 0.97001 * 120.00815 * 180.02562 * 21 20 18 45 45 H 1.07999 * 119.96688 * 180.02562 * 26 16 15 46 46 H 1.07993 * 120.03945 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1696 -1.4691 2.7943 7 6 5.9656 -1.2339 2.6965 8 8 3.8668 -2.8541 2.6977 9 7 2.0182 -0.6905 -1.1962 10 6 2.1469 -0.0182 -2.3573 11 8 1.8573 1.1615 -2.4119 12 7 2.5967 -0.6533 -3.4576 13 6 2.6388 0.0179 -4.6848 14 6 2.3852 -0.6708 -5.8636 15 6 2.4230 -0.0045 -7.0728 16 6 2.7234 1.3447 -7.1113 17 6 2.7699 2.0673 -8.4329 18 6 4.1663 1.9968 -8.9951 19 1 4.9426 1.4808 -8.4497 20 6 4.4529 2.5912 -10.2057 21 7 3.5075 3.2191 -10.8702 22 14 6.1837 2.5032 -10.9030 23 1 7.0554 1.7455 -9.9696 24 1 6.1527 1.8169 -12.2195 25 1 6.7190 3.8778 -11.0738 26 6 2.9816 2.0323 -5.9396 27 6 2.9408 1.3727 -4.7268 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4369 1.3572 35 1 6.1935 -0.1681 2.7063 36 1 6.4421 -1.7155 3.5504 37 1 6.3404 -1.6772 1.7740 38 1 2.2490 -1.6317 -1.1527 39 1 2.8910 -1.5757 -3.3988 40 1 2.1554 -1.7257 -5.8347 41 1 2.2218 -0.5386 -7.9896 42 1 2.0741 1.5979 -9.1283 43 1 2.4892 3.1104 -8.2868 44 1 3.7089 3.6369 -11.7221 45 1 3.2155 3.0861 -5.9729 46 1 3.1429 1.9101 -3.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932574086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:43 Heat of formation + Delta-G solvation = -52.682042 kcal Electronic energy + Delta-G solvation = -25877.473597 eV Core-core repulsion = 22086.458128 eV Total energy + Delta-G solvation = -3791.015468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.57919 -38.56419 -36.83866 -36.12498 -34.76288 -33.17205 -32.51508 -30.64595 -30.24341 -29.79982 -29.36408 -26.52998 -24.53236 -23.38387 -22.33252 -21.73137 -20.86846 -20.15014 -18.56690 -17.95253 -17.32585 -16.32678 -16.20741 -15.78992 -15.45043 -15.43393 -14.95468 -14.89784 -14.61357 -14.19527 -14.07807 -13.92454 -13.64692 -13.34298 -13.05396 -13.02930 -12.78315 -12.61426 -12.46804 -12.32234 -12.03164 -11.95195 -11.76854 -11.40055 -11.27733 -11.23808 -10.83267 -10.59323 -10.51954 -10.38198 -10.11008 -9.84504 -9.43857 -9.30702 -9.20222 -8.73564 -8.40850 -8.24068 -7.33413 -6.01772 -4.05636 1.02649 1.98595 2.11522 2.12088 2.56163 3.18227 3.30162 3.30259 3.37698 3.42762 4.05566 4.28453 4.40011 4.40664 4.48020 4.60441 4.63150 4.74557 5.01210 5.10352 5.14333 5.28091 5.32138 5.40601 5.43093 5.46115 5.54020 5.61804 5.71469 5.96219 5.99536 6.09484 6.13258 6.24343 6.33427 6.59506 6.71106 6.98371 7.08050 7.20992 7.25782 7.54996 7.76480 7.88327 7.91029 7.94243 8.35165 8.52387 9.00001 9.57923 11.07796 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.001910 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.631099 B =14654.555835 C =15564.690360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.094 0.906 4 C -0.107 4.107 5 C -0.449 4.449 6 S 1.240 4.760 7 C -0.490 4.490 8 O -0.854 6.854 9 N -0.743 5.743 10 C 0.702 3.298 11 O -0.571 6.571 12 N -0.683 5.683 13 C 0.120 3.880 14 C -0.145 4.145 15 C -0.109 4.109 16 C -0.044 4.044 17 C 0.047 3.953 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.109 4.109 27 C -0.116 4.116 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.400 0.600 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.028 0.972 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.121 0.879 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 -8.442 31.268 32.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.059 3.941 3 H 0.112 0.888 4 C -0.146 4.146 5 C -0.586 4.586 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.399 5.399 10 C 0.402 3.598 11 O -0.447 6.447 12 N -0.330 5.330 13 C 0.027 3.973 14 C -0.166 4.166 15 C -0.127 4.127 16 C -0.045 4.045 17 C 0.011 3.989 18 C -0.547 4.547 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.128 4.128 27 C -0.136 4.136 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.226 0.774 39 H 0.234 0.766 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.568 -7.765 31.814 32.849 hybrid contribution 2.206 -1.858 -2.432 3.772 sum -0.362 -9.623 29.382 30.920 Atomic orbital electron populations 1.22226 0.95115 1.02190 1.03000 1.20812 0.93811 0.97323 0.82181 0.88841 1.21518 0.92320 1.02052 0.98740 1.27708 1.02992 1.11275 1.16598 1.70439 0.87735 0.94527 1.03406 1.27631 1.21246 1.08543 1.07301 1.93141 1.78686 1.30761 1.82325 1.45260 1.72066 1.13476 1.09092 1.15943 0.78311 0.85300 0.80204 1.90938 1.56149 1.13807 1.83845 1.42476 1.67560 1.16083 1.06858 1.17302 1.04250 0.92653 0.83060 1.20721 1.04735 0.99325 0.91811 1.20857 1.00841 0.94578 0.96453 1.20704 0.92784 0.93737 0.97242 1.18353 0.97652 0.95310 0.87629 1.21107 0.94674 1.34570 1.04372 0.92442 1.25021 0.97219 0.95295 0.96919 1.69966 1.32409 1.35932 1.15026 0.86491 0.84586 0.77782 0.78913 1.19718 1.20979 1.20957 1.21014 1.00299 1.00140 0.91329 1.21139 1.00599 0.93275 0.98609 0.91567 0.91393 0.92587 0.88873 0.90837 0.89490 0.86120 0.86821 0.87620 0.90107 0.77356 0.76611 0.86984 0.86067 0.95334 0.95292 0.92927 0.86149 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.48 37.15 0.35 -0.93 16 2 C 0.16 1.27 2.57 -67.94 -0.17 1.09 16 3 H 0.09 0.84 7.58 -51.93 -0.39 0.45 16 4 C -0.11 -0.52 4.76 -26.74 -0.13 -0.65 16 5 C -0.45 -2.00 5.81 37.15 0.22 -1.79 16 6 S 1.24 4.84 13.80 -107.50 -1.48 3.36 16 7 C -0.49 -1.88 10.74 101.05 1.09 -0.80 16 8 O -0.85 -9.47 18.14 -35.23 -0.64 -10.11 16 9 N -0.74 -6.82 4.53 -58.68 -0.27 -7.09 16 10 C 0.70 9.47 8.37 -86.92 -0.73 8.74 16 11 O -0.57 -9.93 13.44 5.29 0.07 -9.86 16 12 N -0.68 -8.98 5.34 -14.22 -0.08 -9.05 16 13 C 0.12 2.05 6.30 -83.69 -0.53 1.52 16 14 C -0.15 -2.46 9.97 -39.40 -0.39 -2.85 16 15 C -0.11 -2.15 9.69 -39.61 -0.38 -2.53 16 16 C -0.04 -0.99 5.07 -104.59 -0.53 -1.52 16 17 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 18 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 22 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.11 -2.29 9.69 -39.61 -0.38 -2.67 16 27 C -0.12 -2.22 8.70 -39.39 -0.34 -2.56 16 28 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.55 7.75 -51.92 -0.40 0.15 16 34 H 0.12 0.34 8.14 -51.92 -0.42 -0.09 16 35 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.11 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 38 H 0.39 2.78 8.62 -40.82 -0.35 2.43 16 39 H 0.40 3.87 8.84 -40.82 -0.36 3.51 16 40 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 42 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 46 H 0.13 2.46 6.22 -52.49 -0.33 2.13 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -39.21 398.89 -10.45 -49.66 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.29 Total: 3.37 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.50 Total: -17.05 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.39 Total: -42.08 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.57 Total: -19.97 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.48 Total: 3.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.21 -10.45 -49.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.020 kcal (2) G-P(sol) polarization free energy of solvation -39.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds