Wall clock time and date at job start Tue Mar 31 2020 20:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47016 * 2 1 4 4 C 1.52994 * 109.47471 * 120.00026 * 2 1 3 5 5 C 1.52994 * 109.47550 * 184.99707 * 4 2 1 6 6 S 1.81399 * 109.47458 * 180.02562 * 5 4 2 7 7 C 1.81402 * 102.99992 * 180.02562 * 6 5 4 8 8 O 1.42101 * 109.46941 * 63.61466 * 6 5 4 9 9 N 1.46500 * 109.47019 * 240.00478 * 2 1 3 10 10 C 1.34782 * 120.00559 * 84.99786 * 9 2 1 11 11 O 1.21591 * 119.99276 * 359.97438 * 10 9 2 12 12 N 1.34774 * 120.00284 * 179.97438 * 10 9 2 13 13 C 1.39944 * 119.99701 * 175.37608 * 12 10 9 14 14 C 1.38863 * 120.06872 * 214.81277 * 13 12 10 15 15 C 1.38115 * 119.92857 * 179.77615 * 14 13 12 16 16 C 1.38276 * 120.06907 * 0.50594 * 15 14 13 17 17 C 1.50699 * 119.93064 * 179.72392 * 16 15 14 18 18 C 1.50697 * 109.47425 * 270.02127 * 17 16 15 19 19 H 1.08000 * 119.99628 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00006 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00434 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00035 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47014 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47211 * 119.99768 * 22 20 18 25 25 H 1.48497 * 109.47191 * 239.99892 * 22 20 18 26 26 C 1.38281 * 120.14169 * 359.74748 * 16 15 14 27 27 C 1.38118 * 120.07038 * 0.02562 * 26 16 15 28 28 H 1.09007 * 109.47612 * 59.99921 * 1 2 3 29 29 H 1.09004 * 109.47412 * 299.99721 * 1 2 3 30 30 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47096 * 305.00526 * 4 2 1 32 32 H 1.09005 * 109.46749 * 64.99986 * 4 2 1 33 33 H 1.09004 * 109.47634 * 300.00323 * 5 4 2 34 34 H 1.09000 * 109.47187 * 60.00036 * 5 4 2 35 35 H 1.08990 * 109.47139 * 60.00376 * 7 6 5 36 36 H 1.09001 * 109.46688 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.47068 * 299.99998 * 7 6 5 38 38 H 0.97001 * 119.99834 * 264.99669 * 9 2 1 39 39 H 0.96996 * 119.99625 * 355.37804 * 12 10 9 40 40 H 1.07999 * 120.03768 * 359.97438 * 14 13 12 41 41 H 1.07997 * 119.96689 * 180.25572 * 15 14 13 42 42 H 1.08999 * 109.46967 * 30.02404 * 17 16 15 43 43 H 1.09000 * 109.47289 * 150.01760 * 17 16 15 44 44 H 0.97001 * 120.00815 * 180.02562 * 21 20 18 45 45 H 1.07999 * 119.96688 * 180.02562 * 26 16 15 46 46 H 1.07993 * 120.03945 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1696 -1.4691 2.7943 7 6 5.9656 -1.2339 2.6965 8 8 3.8668 -2.8541 2.6977 9 7 2.0182 -0.6905 -1.1962 10 6 2.1469 -0.0182 -2.3573 11 8 1.8573 1.1615 -2.4119 12 7 2.5967 -0.6533 -3.4576 13 6 2.6388 0.0179 -4.6848 14 6 2.3852 -0.6708 -5.8636 15 6 2.4230 -0.0045 -7.0728 16 6 2.7234 1.3447 -7.1113 17 6 2.7699 2.0673 -8.4329 18 6 4.1663 1.9968 -8.9951 19 1 4.9426 1.4808 -8.4497 20 6 4.4529 2.5912 -10.2057 21 7 3.5075 3.2191 -10.8702 22 14 6.1837 2.5032 -10.9030 23 1 7.0554 1.7455 -9.9696 24 1 6.1527 1.8169 -12.2195 25 1 6.7190 3.8778 -11.0738 26 6 2.9816 2.0323 -5.9396 27 6 2.9408 1.3727 -4.7268 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6054 -0.2618 2.1369 32 1 1.7516 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4369 1.3572 35 1 6.1935 -0.1681 2.7063 36 1 6.4421 -1.7155 3.5504 37 1 6.3404 -1.6772 1.7740 38 1 2.2490 -1.6317 -1.1527 39 1 2.8910 -1.5757 -3.3988 40 1 2.1554 -1.7257 -5.8347 41 1 2.2218 -0.5386 -7.9896 42 1 2.0741 1.5979 -9.1283 43 1 2.4892 3.1104 -8.2868 44 1 3.7089 3.6369 -11.7221 45 1 3.2155 3.0861 -5.9729 46 1 3.1429 1.9101 -3.8121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932574086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:42 Heat of formation + Delta-G solvation = -80.880543 kcal Electronic energy + Delta-G solvation = -25878.696375 eV Core-core repulsion = 22086.458128 eV Total energy + Delta-G solvation = -3792.238247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.71150 -39.91048 -37.71430 -36.76156 -36.16163 -35.01942 -33.49257 -32.01510 -31.75617 -30.71164 -29.70835 -28.31341 -25.43849 -24.81721 -23.83339 -22.85283 -21.70004 -21.62947 -19.62469 -18.57720 -18.48297 -18.31501 -17.12354 -16.73106 -16.59684 -16.26654 -15.97722 -15.89769 -15.68981 -15.53312 -15.10201 -14.76489 -14.56440 -14.45528 -14.28549 -14.13567 -13.89719 -13.63864 -13.52694 -13.29013 -13.20047 -13.01693 -12.76382 -12.64384 -12.55884 -12.46339 -12.22239 -12.05956 -11.86086 -11.65564 -11.55162 -11.22470 -11.05637 -10.87841 -10.61214 -10.15003 -9.76506 -9.16077 -8.85266 -8.18556 -6.33345 0.48341 0.57522 0.68081 1.38878 1.39318 1.52974 1.57255 1.79618 2.06398 2.39659 2.90749 3.00303 3.10330 3.17027 3.81766 3.92496 4.03906 4.06391 4.16063 4.27490 4.38357 4.43796 4.51058 4.53253 4.59436 4.65614 4.71961 4.75098 4.84046 4.89614 5.04289 5.13304 5.15297 5.19895 5.30931 5.32952 5.35690 5.41974 5.49877 5.54945 5.63888 5.75792 5.94313 6.08478 6.12948 6.26190 6.79450 6.95202 7.34966 7.48041 8.89517 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.001910 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.631099 B =14654.555835 C =15564.690360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.082 0.918 4 C -0.104 4.104 5 C -0.451 4.451 6 S 1.302 4.698 7 C -0.493 4.493 8 O -0.926 6.926 9 N -0.725 5.725 10 C 0.699 3.301 11 O -0.611 6.611 12 N -0.672 5.672 13 C 0.136 3.864 14 C -0.131 4.131 15 C -0.113 4.113 16 C -0.076 4.076 17 C 0.057 3.943 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.277 1.277 26 C -0.120 4.120 27 C -0.122 4.122 28 H 0.032 0.968 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.110 0.890 37 H 0.061 0.939 38 H 0.406 0.594 39 H 0.420 0.580 40 H 0.155 0.845 41 H 0.126 0.874 42 H 0.007 0.993 43 H 0.000 1.000 44 H 0.265 0.735 45 H 0.110 0.890 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 -9.971 33.657 35.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 H 0.100 0.900 4 C -0.142 4.142 5 C -0.588 4.588 6 S 1.503 4.497 7 C -0.651 4.651 8 O -0.922 6.922 9 N -0.381 5.381 10 C 0.399 3.601 11 O -0.491 6.491 12 N -0.321 5.321 13 C 0.042 3.958 14 C -0.151 4.151 15 C -0.132 4.132 16 C -0.077 4.077 17 C 0.020 3.980 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.203 1.203 26 C -0.139 4.139 27 C -0.142 4.142 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.242 0.758 39 H 0.258 0.742 40 H 0.173 0.827 41 H 0.144 0.856 42 H 0.025 0.975 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.129 0.871 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.546 -9.362 34.260 35.550 hybrid contribution 1.857 -1.362 -3.041 3.815 sum 0.311 -10.724 31.219 33.011 Atomic orbital electron populations 1.22200 0.94974 1.02481 1.02553 1.21002 0.93936 0.97068 0.82489 0.90014 1.21549 0.92588 1.01595 0.98506 1.27743 1.02796 1.12506 1.15801 1.69664 0.86940 0.91312 1.01832 1.27673 1.20508 1.10427 1.06533 1.93009 1.80566 1.34831 1.83787 1.45217 1.70664 1.14015 1.08160 1.16128 0.78042 0.84914 0.81008 1.90922 1.57825 1.15791 1.84547 1.42313 1.67417 1.16845 1.05555 1.17360 1.01728 0.92004 0.84738 1.20994 1.02795 1.01108 0.90235 1.20950 1.00640 0.93511 0.98098 1.20408 0.96545 0.95130 0.95640 1.18093 0.96415 0.93937 0.89555 1.21403 0.95508 1.34618 1.04795 0.92706 1.25959 1.01722 0.94708 0.97242 1.70090 1.34746 1.36699 1.15549 0.85365 0.79122 0.78083 0.78275 1.18934 1.20020 1.20254 1.20941 1.01157 0.99936 0.91854 1.21138 1.01051 0.94487 0.97529 0.94892 0.88984 0.91878 0.85389 0.91448 0.91244 0.83896 0.84014 0.87143 0.91971 0.75811 0.74195 0.82709 0.85630 0.97517 0.98192 0.92579 0.87140 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 71.98 0.68 -1.53 16 2 C 0.16 2.13 2.57 44.99 0.12 2.24 16 3 H 0.08 1.34 7.58 -2.39 -0.02 1.32 16 4 C -0.10 -0.71 4.76 30.59 0.15 -0.56 16 5 C -0.45 -2.84 5.81 71.98 0.42 -2.43 16 6 S 1.30 7.50 13.80 -56.49 -0.78 6.72 16 7 C -0.49 -2.71 10.74 113.37 1.22 -1.49 16 8 O -0.93 -19.74 18.14 -148.98 -2.70 -22.44 16 9 N -0.72 -11.85 4.53 -457.82 -2.08 -13.92 16 10 C 0.70 17.74 8.37 179.05 1.50 19.24 16 11 O -0.61 -20.95 13.44 -4.00 -0.05 -21.01 16 12 N -0.67 -16.04 5.34 -317.17 -1.69 -17.74 16 13 C 0.14 4.41 6.30 38.15 0.24 4.65 16 14 C -0.13 -4.12 9.97 22.39 0.22 -3.90 16 15 C -0.11 -4.46 9.69 22.25 0.22 -4.24 16 16 C -0.08 -3.56 5.07 -19.85 -0.10 -3.66 16 17 C 0.06 3.16 5.10 29.10 0.15 3.31 16 18 C -0.53 -30.71 9.09 25.60 0.23 -30.48 16 19 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.00 0.09 5.46 84.65 0.46 0.55 16 21 N -0.93 -57.09 13.29 21.44 0.28 -56.81 16 22 Si 0.97 45.01 29.54 68.60 2.03 47.03 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 26 C -0.12 -5.23 9.69 22.25 0.22 -5.01 16 27 C -0.12 -4.65 8.70 22.39 0.19 -4.46 16 28 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.07 0.73 7.75 -2.39 -0.02 0.72 16 34 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.14 -0.02 8.14 -2.40 -0.02 -0.04 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.41 4.71 8.62 -92.71 -0.80 3.91 16 39 H 0.42 6.67 8.84 -92.71 -0.82 5.85 16 40 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 43 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 44 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 45 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 46 H 0.13 4.93 6.22 -2.91 -0.02 4.92 16 Total: -1.00 -89.04 398.89 0.29 -88.76 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -0.63 Total: 17.18 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.91 Total: -27.77 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -3.49 Total: -88.47 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -2.76 Total: -43.45 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 7.50 SS G_CDS: -0.78 Total: 6.72 kcal Total: -89.04 0.29 -88.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.876 kcal (2) G-P(sol) polarization free energy of solvation -89.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds