Wall clock time and date at job start Tue Mar 31 2020 20:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46720 * 2 1 4 4 C 1.52998 * 109.46943 * 239.99970 * 2 1 3 5 5 C 1.53005 * 109.46770 * 174.99978 * 4 2 1 6 6 S 1.81405 * 109.47144 * 179.97438 * 5 4 2 7 7 C 1.81391 * 103.00234 * 179.97438 * 6 5 4 8 8 O 1.42105 * 109.46557 * 296.38613 * 6 5 4 9 9 N 1.46502 * 109.47012 * 119.99624 * 2 1 3 10 10 C 1.34770 * 119.99742 * 274.99863 * 9 2 1 11 11 O 1.21582 * 120.00708 * 0.02562 * 10 9 2 12 12 N 1.34778 * 119.99614 * 180.02562 * 10 9 2 13 13 C 1.39952 * 120.00008 * 174.69133 * 12 10 9 14 14 C 1.38860 * 120.06750 * 326.56252 * 13 12 10 15 15 C 1.38116 * 119.92827 * 179.76805 * 14 13 12 16 16 C 1.38276 * 120.06969 * 0.51175 * 15 14 13 17 17 C 1.50692 * 119.93253 * 179.72017 * 16 15 14 18 18 C 1.50703 * 109.47548 * 270.02397 * 17 16 15 19 19 H 1.08002 * 119.99369 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00227 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99962 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46816 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47384 * 119.99744 * 22 20 18 25 25 H 1.48499 * 109.46887 * 239.99794 * 22 20 18 26 26 C 1.38281 * 120.14081 * 359.74224 * 16 15 14 27 27 C 1.38114 * 120.06819 * 0.02562 * 26 16 15 28 28 H 1.09001 * 109.47257 * 60.00425 * 1 2 3 29 29 H 1.09007 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47455 * 299.99936 * 1 2 3 31 31 H 1.08999 * 109.47612 * 54.99812 * 4 2 1 32 32 H 1.08998 * 109.47010 * 294.99364 * 4 2 1 33 33 H 1.08995 * 109.47541 * 59.99920 * 5 4 2 34 34 H 1.08998 * 109.46853 * 299.99482 * 5 4 2 35 35 H 1.08994 * 109.47227 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46840 * 300.00247 * 7 6 5 37 37 H 1.09002 * 109.47386 * 59.99437 * 7 6 5 38 38 H 0.96996 * 119.99857 * 95.00475 * 9 2 1 39 39 H 0.96996 * 120.00450 * 354.68662 * 12 10 9 40 40 H 1.08004 * 120.04006 * 0.02562 * 14 13 12 41 41 H 1.08002 * 119.96437 * 180.25683 * 15 14 13 42 42 H 1.09007 * 109.47194 * 30.02395 * 17 16 15 43 43 H 1.09000 * 109.47459 * 150.01960 * 17 16 15 44 44 H 0.97001 * 120.00249 * 180.02562 * 21 20 18 45 45 H 1.08003 * 119.96803 * 179.97438 * 26 16 15 46 46 H 1.07999 * 120.03510 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 16 4.1697 -1.4690 -2.7944 7 6 5.9656 -1.2338 -2.6968 8 8 3.8669 -2.8541 -2.6977 9 7 2.0184 -0.6905 1.1962 10 6 2.1471 -0.0181 2.3571 11 8 1.8575 1.1615 2.4118 12 7 2.5968 -0.6533 3.4574 13 6 2.8362 0.0677 4.6329 14 6 3.2921 1.3775 4.5649 15 6 3.5229 2.0879 5.7267 16 6 3.3105 1.4927 6.9566 17 6 3.5693 2.2686 8.2222 18 6 4.9993 2.0658 8.6523 19 1 5.6551 1.4375 8.0678 20 6 5.4702 2.6816 9.7925 21 7 4.6716 3.4462 10.5046 22 14 7.2431 2.4308 10.3252 23 1 7.9276 1.5333 9.3602 24 1 7.9391 3.7419 10.3620 25 1 7.2716 1.8171 11.6772 26 6 2.8616 0.1867 7.0276 27 6 2.6244 -0.5275 5.8695 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6054 -0.2618 -2.1370 32 1 1.7517 -1.7715 -1.2055 33 1 3.9995 -1.0727 -0.4260 34 1 3.8532 0.4370 -1.3574 35 1 6.4421 -1.7154 -3.5506 36 1 6.1934 -0.1679 -2.7065 37 1 6.3406 -1.6770 -1.7742 38 1 2.2491 -1.6317 1.1527 39 1 2.7545 -1.6101 3.4348 40 1 3.4621 1.8418 3.6047 41 1 3.8735 3.1081 5.6745 42 1 3.3911 3.3287 8.0414 43 1 2.9003 1.9166 9.0075 44 1 5.0031 3.8797 11.3066 45 1 2.6970 -0.2756 7.9897 46 1 2.2741 -1.5475 5.9256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932574087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:46 Heat of formation + Delta-G solvation = -53.322704 kcal Electronic energy + Delta-G solvation = -25909.831927 eV Core-core repulsion = 22118.788678 eV Total energy + Delta-G solvation = -3791.043250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.58215 -38.57096 -36.83816 -36.11257 -34.76754 -33.16938 -32.51268 -30.64487 -30.25678 -29.80628 -29.35212 -26.53546 -24.53230 -23.38872 -22.36778 -21.72190 -20.86364 -20.13376 -18.57078 -17.94114 -17.33054 -16.35317 -16.24262 -15.75072 -15.48601 -15.40551 -14.91248 -14.87265 -14.60515 -14.18872 -14.08606 -13.92601 -13.65044 -13.33072 -13.04807 -13.03517 -12.79306 -12.62250 -12.47714 -12.31765 -12.04015 -11.96227 -11.76641 -11.39820 -11.27759 -11.24090 -10.82516 -10.59362 -10.51006 -10.37680 -10.14658 -9.88213 -9.45952 -9.30752 -9.20685 -8.72469 -8.41111 -8.25224 -7.32133 -6.01996 -4.05897 1.03919 1.97906 2.10178 2.13146 2.56358 3.18661 3.29914 3.31385 3.37478 3.42478 4.05560 4.28930 4.40429 4.40728 4.48475 4.60212 4.64733 4.76036 5.01339 5.10136 5.14849 5.28163 5.31887 5.40106 5.44723 5.45235 5.54519 5.59176 5.70875 5.95322 5.98347 6.07341 6.12553 6.23558 6.32216 6.58652 6.69319 6.97052 7.07573 7.20455 7.24579 7.54684 7.75646 7.87953 7.90429 7.93997 8.34886 8.52049 8.99726 9.57685 11.07559 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016011 B = 0.001983 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.424510 B =14117.346226 C =15218.561271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.165 3.835 3 H 0.094 0.906 4 C -0.107 4.107 5 C -0.449 4.449 6 S 1.240 4.760 7 C -0.489 4.489 8 O -0.854 6.854 9 N -0.743 5.743 10 C 0.702 3.298 11 O -0.570 6.570 12 N -0.683 5.683 13 C 0.124 3.876 14 C -0.117 4.117 15 C -0.107 4.107 16 C -0.045 4.045 17 C 0.047 3.953 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.284 1.284 26 C -0.107 4.107 27 C -0.146 4.146 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.105 0.895 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.393 0.607 39 H 0.400 0.600 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.029 0.971 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.122 0.878 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.658 -8.918 -30.217 31.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.112 0.888 4 C -0.146 4.146 5 C -0.586 4.586 6 S 1.439 4.561 7 C -0.647 4.647 8 O -0.849 6.849 9 N -0.399 5.399 10 C 0.402 3.598 11 O -0.447 6.447 12 N -0.330 5.330 13 C 0.031 3.969 14 C -0.137 4.137 15 C -0.126 4.126 16 C -0.046 4.046 17 C 0.011 3.989 18 C -0.547 4.547 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.126 4.126 27 C -0.167 4.167 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.132 0.868 37 H 0.099 0.901 38 H 0.227 0.773 39 H 0.234 0.766 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.140 0.860 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.424 -8.223 -30.775 32.314 hybrid contribution 2.167 -1.951 2.349 3.744 sum -3.257 -10.174 -28.426 30.367 Atomic orbital electron populations 1.22230 0.95146 1.02170 1.02994 1.20819 0.93780 0.97347 0.82204 0.88827 1.21516 0.92347 1.02027 0.98706 1.27709 1.02964 1.11292 1.16620 1.70429 0.87760 0.94520 1.03414 1.27629 1.21210 1.08563 1.07316 1.93140 1.78700 1.30764 1.82336 1.45258 1.72108 1.13580 1.08943 1.15933 0.78261 0.85337 0.80247 1.90954 1.55594 1.14074 1.84032 1.42521 1.69311 1.11180 1.10015 1.17286 1.02628 0.93063 0.83921 1.20987 1.00117 0.93590 0.99021 1.20985 1.00121 1.00059 0.91401 1.20691 0.92793 0.94165 0.96919 1.18351 0.97163 0.94844 0.88573 1.21108 0.95540 1.29272 1.08808 0.92453 1.25020 0.97753 0.95191 0.96482 1.69967 1.35400 1.31434 1.16525 0.86492 0.84856 0.77960 0.78472 1.19722 1.20954 1.20980 1.20863 1.00135 0.94453 0.97127 1.20704 1.04715 1.00050 0.91238 0.91382 0.92592 0.91596 0.88873 0.90845 0.89458 0.86109 0.87618 0.86807 0.90087 0.77345 0.76597 0.85828 0.86139 0.95289 0.95328 0.92925 0.86045 0.86952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 9.48 37.16 0.35 -0.91 16 2 C 0.16 1.27 2.57 -67.93 -0.17 1.09 16 3 H 0.09 0.85 7.58 -51.93 -0.39 0.46 16 4 C -0.11 -0.53 4.76 -26.73 -0.13 -0.65 16 5 C -0.45 -2.08 5.81 37.16 0.22 -1.87 16 6 S 1.24 5.03 13.80 -107.50 -1.48 3.55 16 7 C -0.49 -1.99 10.74 101.05 1.09 -0.91 16 8 O -0.85 -9.59 18.14 -35.23 -0.64 -10.23 16 9 N -0.74 -6.84 4.53 -58.68 -0.27 -7.11 16 10 C 0.70 9.49 8.27 -86.92 -0.72 8.77 16 11 O -0.57 -9.98 13.70 5.29 0.07 -9.91 16 12 N -0.68 -8.99 5.35 -14.23 -0.08 -9.07 16 13 C 0.12 2.11 6.28 -83.69 -0.53 1.58 16 14 C -0.12 -2.22 8.65 -39.40 -0.34 -2.56 16 15 C -0.11 -2.23 9.69 -39.61 -0.38 -2.62 16 16 C -0.05 -1.01 5.07 -104.60 -0.53 -1.54 16 17 C 0.05 1.24 5.10 -29.04 -0.15 1.10 16 18 C -0.51 -14.39 9.09 -34.44 -0.31 -14.71 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 27 C -0.15 -2.48 9.96 -39.40 -0.39 -2.87 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.58 7.75 -51.93 -0.40 0.18 16 34 H 0.12 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.21 8.14 -51.92 -0.42 -0.21 16 37 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.39 2.79 8.62 -40.82 -0.35 2.44 16 39 H 0.40 3.87 8.83 -40.82 -0.36 3.51 16 40 H 0.12 2.33 6.42 -52.48 -0.34 1.99 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.12 2.30 8.06 -52.48 -0.42 1.87 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 399.18 15.07 6.02 6.02 Total: -1.00 -39.25 399.18 -10.44 -49.70 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.30 Total: 3.36 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -2.48 Total: -17.07 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.39 Total: -42.09 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.57 Total: -20.13 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.48 Total: 3.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.25 -10.44 -49.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932574087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.626 kcal (2) G-P(sol) polarization free energy of solvation -39.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds