Wall clock time and date at job start Tue Mar 31 2020 20:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81403 * 102.99925 * 2 1 4 4 H 1.08996 * 109.47152 * 304.99375 * 3 2 1 5 5 C 1.52997 * 109.47183 * 65.00181 * 3 2 1 6 6 O 1.42898 * 109.47138 * 65.00061 * 5 3 2 7 7 C 1.53000 * 109.46957 * 184.99937 * 3 2 1 8 8 H 1.09001 * 109.47376 * 305.00089 * 7 3 2 9 9 C 1.53003 * 109.47271 * 64.99938 * 7 3 2 10 10 N 1.46498 * 109.47388 * 184.99816 * 7 3 2 11 11 C 1.34770 * 120.00554 * 154.99886 * 10 7 3 12 12 O 1.21599 * 119.99856 * 0.02562 * 11 10 7 13 13 N 1.34774 * 120.00698 * 180.02562 * 11 10 7 14 14 C 1.39938 * 120.00454 * 174.68660 * 13 11 10 15 15 C 1.38864 * 120.07160 * 326.56643 * 14 13 11 16 16 C 1.38114 * 119.92879 * 179.76558 * 15 14 13 17 17 C 1.38277 * 120.07329 * 0.51211 * 16 15 14 18 18 C 1.50701 * 119.93273 * 179.71973 * 17 16 15 19 19 C 1.50700 * 109.47008 * 270.02276 * 18 17 16 20 20 H 1.07996 * 120.00125 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99700 * 180.02562 * 19 18 17 22 22 N 1.31521 * 120.00142 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46988 * 89.99700 * 23 21 19 25 25 H 1.48499 * 109.47000 * 209.99774 * 23 21 19 26 26 H 1.48496 * 109.46798 * 329.99977 * 23 21 19 27 27 C 1.38279 * 120.13552 * 359.74447 * 17 16 15 28 28 C 1.38112 * 120.07405 * 359.97438 * 27 17 16 29 29 H 1.08997 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47102 * 300.00014 * 1 2 3 31 31 H 1.09004 * 109.47036 * 60.00021 * 1 2 3 32 32 H 1.08994 * 109.47010 * 185.00131 * 5 3 2 33 33 H 1.09003 * 109.46695 * 304.99489 * 5 3 2 34 34 H 0.96698 * 113.99943 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.47191 * 299.99863 * 9 7 3 36 36 H 1.09001 * 109.46797 * 59.99796 * 9 7 3 37 37 H 1.08999 * 109.47460 * 179.97438 * 9 7 3 38 38 H 0.97000 * 119.99766 * 335.27842 * 10 7 3 39 39 H 0.97007 * 119.99630 * 354.68967 * 13 11 10 40 40 H 1.08002 * 120.03260 * 359.97438 * 15 14 13 41 41 H 1.08002 * 119.96346 * 180.25463 * 16 15 14 42 42 H 1.09003 * 109.47040 * 30.02294 * 18 17 16 43 43 H 1.09000 * 109.47048 * 150.01873 * 18 17 16 44 44 H 0.97001 * 120.00067 * 180.02562 * 22 21 19 45 45 H 1.08008 * 119.96326 * 179.97438 * 27 17 16 46 46 H 1.07998 * 120.03742 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 8 2.4730 1.8451 2.4024 7 6 3.7370 1.9412 -0.1257 8 1 4.2339 1.3804 0.6659 9 6 4.1989 1.4191 -1.4877 10 7 4.0774 3.3610 -0.0060 11 6 5.3045 3.7267 0.4146 12 8 6.1293 2.8782 0.6943 13 7 5.6175 5.0329 0.5252 14 6 6.8506 5.4136 1.0665 15 6 7.4354 4.6514 2.0692 16 6 8.6547 5.0272 2.5979 17 6 9.2881 6.1668 2.1374 18 6 10.6155 6.5773 2.7210 19 6 10.3859 7.4856 3.9014 20 1 9.3795 7.7397 4.1995 21 6 11.4608 7.9920 4.6008 22 7 12.6864 7.6821 4.2381 23 14 11.1763 9.1173 6.0645 24 1 11.0721 8.3030 7.3019 25 1 12.3133 10.0642 6.1893 26 1 9.9172 9.8790 5.8658 27 6 8.7058 6.9308 1.1427 28 6 7.4894 6.5573 0.6058 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9075 3.4784 1.2706 33 1 0.6797 2.2010 1.4400 34 1 2.2206 2.2016 3.2651 35 1 3.9457 0.3627 -1.5768 36 1 3.7019 1.9799 -2.2793 37 1 5.2781 1.5432 -1.5775 38 1 3.4183 4.0380 -0.2256 39 1 4.9880 5.7093 0.2297 40 1 6.9388 3.7639 2.4328 41 1 9.1121 4.4326 3.3749 42 1 11.1597 5.6903 3.0454 43 1 11.1975 7.1042 1.9648 44 1 13.4426 8.0381 4.7304 45 1 9.2028 7.8207 0.7853 46 1 7.0349 7.1547 -0.1708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932576602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:23 Heat of formation + Delta-G solvation = -55.683700 kcal Electronic energy + Delta-G solvation = -26357.661802 eV Core-core repulsion = 22566.516172 eV Total energy + Delta-G solvation = -3791.145630 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.57936 -38.69719 -37.68701 -35.83517 -34.70503 -33.06310 -32.00345 -30.38223 -30.20748 -29.81892 -28.81780 -26.50703 -24.12358 -23.34421 -22.33905 -21.78432 -20.85401 -20.12743 -18.70756 -18.00870 -17.30504 -16.53677 -16.27145 -16.03965 -15.45769 -15.34125 -14.92789 -14.83354 -14.56979 -14.16685 -14.04101 -13.83313 -13.72505 -13.44638 -13.06475 -12.88799 -12.76002 -12.66622 -12.45592 -12.31993 -11.97790 -11.73626 -11.42968 -11.30316 -11.23420 -10.79079 -10.57308 -10.51575 -10.36085 -10.22127 -10.07710 -9.84987 -9.42938 -9.28782 -9.19617 -8.38386 -8.21649 -8.01529 -7.28949 -5.99582 -4.03492 1.06958 2.01497 2.07893 2.14031 2.65061 3.23865 3.32820 3.38871 3.42730 3.69790 4.04355 4.13084 4.26369 4.42663 4.60386 4.63238 4.65863 4.75564 4.84376 4.90569 5.12867 5.22328 5.25364 5.34177 5.47463 5.53081 5.62787 5.77415 6.00289 6.03719 6.10936 6.15483 6.26779 6.29774 6.60480 6.72942 7.00795 7.09566 7.23095 7.23758 7.28383 7.57333 7.78957 7.90723 7.93503 7.96304 8.37371 8.56495 9.01866 9.59868 11.09908 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024845 B = 0.001973 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.728541 B =14185.004315 C =14629.878962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.210 6.210 3 C -0.073 4.073 4 H 0.102 0.898 5 C 0.083 3.917 6 O -0.550 6.550 7 C 0.188 3.812 8 H 0.108 0.892 9 C -0.167 4.167 10 N -0.739 5.739 11 C 0.705 3.295 12 O -0.565 6.565 13 N -0.682 5.682 14 C 0.124 3.876 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.045 4.045 18 C 0.048 3.952 19 C -0.510 4.510 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.108 4.108 28 C -0.147 4.147 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.381 0.619 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.390 0.610 39 H 0.399 0.601 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.029 0.971 43 H 0.028 0.972 44 H 0.261 0.739 45 H 0.121 0.879 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.545 -10.513 -11.469 32.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.016 5.984 3 C -0.202 4.202 4 H 0.120 0.880 5 C 0.003 3.997 6 O -0.355 6.355 7 C 0.082 3.918 8 H 0.126 0.874 9 C -0.226 4.226 10 N -0.395 5.395 11 C 0.406 3.594 12 O -0.440 6.440 13 N -0.329 5.329 14 C 0.032 3.968 15 C -0.136 4.136 16 C -0.126 4.126 17 C -0.046 4.046 18 C 0.011 3.989 19 C -0.548 4.548 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.126 4.126 28 C -0.167 4.167 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.228 0.772 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.224 0.776 39 H 0.233 0.767 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.139 0.861 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -26.679 -12.539 -11.661 31.701 hybrid contribution -2.040 2.780 0.928 3.571 sum -28.719 -9.759 -10.734 32.174 Atomic orbital electron populations 1.23486 0.95161 1.06694 1.04702 1.87077 1.05965 1.07704 1.97640 1.23612 1.00463 0.96613 0.99522 0.88032 1.22141 0.94216 0.96349 0.86989 1.86607 1.64229 1.67694 1.16957 1.20351 0.90426 0.81217 0.99767 0.87406 1.22310 1.02682 1.01850 0.95747 1.45100 1.13465 1.07729 1.73234 1.15839 0.82437 0.82862 0.78311 1.90979 1.48104 1.49696 1.55209 1.42472 1.18581 1.05795 1.66095 1.17270 0.86378 0.97093 0.96108 1.21016 0.96832 1.00191 0.95589 1.20993 0.94586 0.97158 0.99821 1.20690 0.98560 0.92318 0.93017 1.18346 0.87893 0.97000 0.95673 1.21073 0.92756 1.28420 1.12533 0.92482 1.25021 0.95144 0.96652 0.97615 1.69964 0.97900 1.44956 1.40505 0.86544 0.77734 0.80567 0.82891 1.20619 1.21219 1.19871 1.20852 0.94564 0.99828 0.97396 1.20691 0.96490 0.97957 1.01591 0.87836 0.90585 0.90586 0.92858 0.93696 0.77235 0.90575 0.92632 0.91348 0.77623 0.76682 0.85714 0.86147 0.95300 0.95342 0.92893 0.86087 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 10.45 101.05 1.06 0.45 16 2 S -0.21 -1.66 20.38 -107.50 -2.19 -3.86 16 3 C -0.07 -0.49 2.27 -26.73 -0.06 -0.55 16 4 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 5 C 0.08 0.50 6.27 37.16 0.23 0.73 16 6 O -0.55 -4.65 12.63 -35.23 -0.45 -5.10 16 7 C 0.19 1.80 1.87 -67.93 -0.13 1.67 16 8 H 0.11 1.45 7.16 -51.93 -0.37 1.08 16 9 C -0.17 -1.56 9.31 37.16 0.35 -1.21 16 10 N -0.74 -6.74 4.41 -58.67 -0.26 -7.00 16 11 C 0.71 9.63 8.27 -86.93 -0.72 8.91 16 12 O -0.56 -10.36 13.70 5.28 0.07 -10.29 16 13 N -0.68 -8.68 5.35 -14.23 -0.08 -8.75 16 14 C 0.12 2.09 6.28 -83.69 -0.53 1.57 16 15 C -0.12 -2.23 8.65 -39.39 -0.34 -2.57 16 16 C -0.11 -2.25 9.69 -39.61 -0.38 -2.64 16 17 C -0.05 -1.01 5.07 -104.59 -0.53 -1.54 16 18 C 0.05 1.25 5.10 -29.03 -0.15 1.11 16 19 C -0.51 -14.42 9.09 -34.44 -0.31 -14.73 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 23 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 27 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 28 C -0.15 -2.44 9.96 -39.39 -0.39 -2.83 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.31 7.02 -51.93 -0.36 -0.06 16 31 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 32 H 0.05 0.26 7.30 -51.93 -0.38 -0.11 16 33 H 0.04 0.21 6.72 -51.93 -0.35 -0.14 16 34 H 0.38 1.83 9.12 45.56 0.42 2.25 16 35 H 0.08 0.69 7.14 -51.93 -0.37 0.32 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 2.22 8.10 -40.82 -0.33 1.89 16 39 H 0.40 3.49 8.83 -40.82 -0.36 3.13 16 40 H 0.13 2.42 6.43 -52.49 -0.34 2.08 16 41 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -35.37 392.96 -9.86 -45.23 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.21 Total: 5.74 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -2.39 Total: -12.61 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.40 Total: -41.72 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.37 Total: -15.39 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.19 Total: -3.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.37 -9.86 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.453 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds