Wall clock time and date at job start Tue Mar 31 2020 20:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81400 * 102.99821 * 2 1 4 4 H 1.09006 * 109.47414 * 55.00343 * 3 2 1 5 5 C 1.53002 * 109.47223 * 294.99763 * 3 2 1 6 6 O 1.42892 * 109.47297 * 295.00104 * 5 3 2 7 7 C 1.53005 * 109.46975 * 174.99834 * 3 2 1 8 8 H 1.09000 * 109.46657 * 60.00452 * 7 3 2 9 9 C 1.52993 * 109.47028 * 300.00163 * 7 3 2 10 10 N 1.46496 * 109.47172 * 180.02562 * 7 3 2 11 11 C 1.34774 * 120.00207 * 205.00020 * 10 7 3 12 12 O 1.21588 * 120.00093 * 0.02562 * 11 10 7 13 13 N 1.34778 * 120.00227 * 179.97438 * 11 10 7 14 14 C 1.39954 * 120.00053 * 184.64051 * 13 11 10 15 15 C 1.38864 * 120.06469 * 324.65895 * 14 13 11 16 16 C 1.38125 * 119.92512 * 179.74455 * 15 14 13 17 17 C 1.38281 * 120.06917 * 0.51392 * 16 15 14 18 18 C 1.50695 * 119.92804 * 179.74508 * 17 16 15 19 19 C 1.50703 * 109.47021 * 270.01682 * 18 17 16 20 20 H 1.08004 * 119.99927 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00153 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99950 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00195 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47366 * 59.99602 * 23 21 19 25 25 H 1.48495 * 109.47228 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46955 * 299.99990 * 23 21 19 27 27 C 1.38282 * 120.13730 * 359.76018 * 17 16 15 28 28 C 1.38108 * 120.07319 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46938 * 300.00435 * 1 2 3 31 31 H 1.09008 * 109.46851 * 59.99960 * 1 2 3 32 32 H 1.09004 * 109.47019 * 55.00650 * 5 3 2 33 33 H 1.09005 * 109.46724 * 175.00270 * 5 3 2 34 34 H 0.96698 * 113.99984 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47637 * 299.99689 * 9 7 3 36 36 H 1.08998 * 109.47642 * 60.00385 * 9 7 3 37 37 H 1.09007 * 109.46775 * 179.97438 * 9 7 3 38 38 H 0.97002 * 120.00195 * 24.99733 * 10 7 3 39 39 H 0.96995 * 120.00281 * 4.63943 * 13 11 10 40 40 H 1.08002 * 120.04181 * 0.02562 * 15 14 13 41 41 H 1.08003 * 119.96083 * 180.23148 * 16 15 14 42 42 H 1.09003 * 109.47232 * 30.02124 * 18 17 16 43 43 H 1.09001 * 109.47288 * 150.02175 * 18 17 16 44 44 H 0.96997 * 120.00264 * 180.02562 * 22 21 19 45 45 H 1.07997 * 119.95952 * 179.97438 * 27 17 16 46 46 H 1.08000 * 120.03586 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7428 2.4016 -1.3074 6 8 2.4729 1.8451 -2.4024 7 6 3.7370 1.9412 0.1258 8 1 4.2295 1.4546 -0.7161 9 6 4.2162 1.3071 1.4331 10 7 4.0665 3.3686 0.1264 11 6 5.2867 3.7788 -0.2727 12 8 6.1140 2.9641 -0.6336 13 7 5.5897 5.0921 -0.2726 14 6 6.8205 5.5263 -0.7777 15 6 7.9580 4.7495 -0.6013 16 6 9.1702 5.1784 -1.1057 17 6 9.2539 6.3847 -1.7764 18 6 10.5792 6.8522 -2.3203 19 6 11.2908 7.6713 -1.2744 20 1 10.8295 7.8363 -0.3118 21 6 12.5310 8.2090 -1.5458 22 7 13.0929 8.0075 -2.7177 23 14 13.4133 9.2235 -0.2491 24 1 13.6396 8.3923 0.9605 25 1 14.7192 9.6843 -0.7851 26 1 12.5821 10.4012 0.1080 27 6 8.1240 7.1631 -1.9487 28 6 6.9079 6.7373 -1.4515 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 0.6796 2.2010 -1.4401 33 1 1.9076 3.4785 -1.2706 34 1 2.2211 2.2022 -3.2650 35 1 3.7236 1.7937 2.2749 36 1 3.9711 0.2451 1.4331 37 1 5.2956 1.4305 1.5224 38 1 3.4064 4.0187 0.4140 39 1 4.9547 5.7363 0.0776 40 1 7.8941 3.8090 -0.0743 41 1 10.0546 4.5729 -0.9721 42 1 11.1896 5.9880 -2.5825 43 1 10.4128 7.4622 -3.2082 44 1 13.9655 8.3855 -2.9086 45 1 8.1927 8.1050 -2.4726 46 1 6.0259 7.3459 -1.5861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932576605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:26 Heat of formation + Delta-G solvation = -55.456245 kcal Electronic energy + Delta-G solvation = -26305.521575 eV Core-core repulsion = 22514.385809 eV Total energy + Delta-G solvation = -3791.135767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57812 -38.69004 -37.69427 -35.85089 -34.70657 -33.06546 -32.01357 -30.38970 -30.20580 -29.81958 -28.79962 -26.50448 -24.12375 -23.32709 -22.31015 -21.78594 -20.89208 -20.14164 -18.69629 -18.03520 -17.29879 -16.52566 -16.26495 -15.96569 -15.50091 -15.34513 -15.04651 -14.81017 -14.49635 -14.18890 -14.02991 -13.97608 -13.72223 -13.35975 -13.06048 -12.89904 -12.76397 -12.60413 -12.48103 -12.35776 -11.96175 -11.70213 -11.41956 -11.33529 -11.23068 -10.78856 -10.59843 -10.51390 -10.35658 -10.21705 -10.05746 -9.81484 -9.39884 -9.31996 -9.19233 -8.37870 -8.21136 -8.01458 -7.30853 -5.99279 -4.03247 1.06685 2.01308 2.07746 2.14750 2.64789 3.22551 3.34726 3.38746 3.42068 3.69120 4.04862 4.12486 4.26210 4.42857 4.60017 4.62955 4.65687 4.74868 4.83829 4.90871 5.13374 5.22719 5.26105 5.34430 5.47496 5.53886 5.64497 5.78426 6.00685 6.05191 6.12084 6.15362 6.26977 6.30841 6.60882 6.73788 7.01429 7.09392 7.21949 7.23633 7.28924 7.57188 7.79188 7.90704 7.93658 7.96448 8.37517 8.56297 9.01830 9.60080 11.10219 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.001887 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.610729 B =14835.880570 C =15063.414494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.209 6.209 3 C -0.072 4.072 4 H 0.101 0.899 5 C 0.083 3.917 6 O -0.551 6.551 7 C 0.187 3.813 8 H 0.109 0.891 9 C -0.167 4.167 10 N -0.740 5.740 11 C 0.705 3.295 12 O -0.565 6.565 13 N -0.682 5.682 14 C 0.121 3.879 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.044 4.044 18 C 0.048 3.952 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.109 4.109 28 C -0.145 4.145 29 H 0.103 0.897 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.381 0.619 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.391 0.609 39 H 0.399 0.601 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.029 0.971 43 H 0.028 0.972 44 H 0.262 0.738 45 H 0.121 0.879 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.320 -11.392 6.131 32.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.017 5.983 3 C -0.202 4.202 4 H 0.119 0.881 5 C 0.003 3.997 6 O -0.356 6.356 7 C 0.081 3.919 8 H 0.127 0.873 9 C -0.226 4.226 10 N -0.396 5.396 11 C 0.406 3.594 12 O -0.440 6.440 13 N -0.329 5.329 14 C 0.028 3.972 15 C -0.135 4.135 16 C -0.127 4.127 17 C -0.045 4.045 18 C 0.011 3.989 19 C -0.549 4.549 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.128 4.128 28 C -0.166 4.166 29 H 0.122 0.878 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.224 0.776 39 H 0.233 0.767 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.139 0.861 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -28.476 -13.378 6.179 32.063 hybrid contribution -1.432 2.716 0.623 3.133 sum -29.908 -10.663 6.801 32.472 Atomic orbital electron populations 1.23497 0.95270 1.06680 1.04689 1.87069 1.05885 1.07685 1.97635 1.23606 1.00484 0.96590 0.99505 0.88053 1.22145 0.94193 0.96399 0.86977 1.86600 1.64294 1.67678 1.16984 1.20378 0.90451 0.80499 1.00544 0.87280 1.22309 1.02580 1.01447 0.96257 1.45116 1.14135 1.08054 1.72309 1.15848 0.82466 0.82657 0.78477 1.90960 1.47674 1.52382 1.53023 1.42440 1.18729 1.06274 1.65487 1.17284 0.83704 0.95885 1.00294 1.21153 0.91015 1.00246 1.01133 1.21023 0.96677 0.96620 0.98416 1.20701 0.97066 0.92396 0.94307 1.18342 0.87529 0.96739 0.96276 1.21040 1.02243 1.31783 0.99819 0.92528 1.25014 0.97340 0.96506 0.95522 1.69949 1.16646 1.45275 1.21467 0.86602 0.78769 0.80549 0.81779 1.20187 1.21277 1.20239 1.20846 0.91496 0.99810 1.00625 1.20700 0.98281 0.96653 1.00971 0.87845 0.90583 0.90613 0.93689 0.92808 0.77243 0.92574 0.90526 0.91364 0.77620 0.76669 0.85272 0.86152 0.95297 0.95362 0.92836 0.86108 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 10.45 101.05 1.06 0.46 16 2 S -0.21 -1.64 20.10 -107.50 -2.16 -3.80 16 3 C -0.07 -0.49 2.28 -26.73 -0.06 -0.55 16 4 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 5 C 0.08 0.50 6.35 37.16 0.24 0.74 16 6 O -0.55 -4.63 12.53 -35.23 -0.44 -5.07 16 7 C 0.19 1.79 1.96 -67.93 -0.13 1.65 16 8 H 0.11 1.47 6.99 -51.93 -0.36 1.10 16 9 C -0.17 -1.57 9.24 37.15 0.34 -1.23 16 10 N -0.74 -6.72 4.46 -58.68 -0.26 -6.98 16 11 C 0.71 9.59 8.37 -86.92 -0.73 8.86 16 12 O -0.57 -10.29 13.46 5.29 0.07 -10.22 16 13 N -0.68 -8.65 5.34 -14.22 -0.08 -8.73 16 14 C 0.12 2.04 6.29 -83.69 -0.53 1.51 16 15 C -0.12 -2.22 8.69 -39.39 -0.34 -2.56 16 16 C -0.11 -2.29 9.69 -39.61 -0.38 -2.68 16 17 C -0.04 -0.99 5.07 -104.59 -0.53 -1.52 16 18 C 0.05 1.26 5.10 -29.04 -0.15 1.11 16 19 C -0.51 -14.48 9.09 -34.44 -0.31 -14.79 16 20 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 23 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 27 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 28 C -0.15 -2.41 9.97 -39.40 -0.39 -2.80 16 29 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.08 0.26 8.14 -51.92 -0.42 -0.17 16 31 H 0.07 0.30 7.02 -51.92 -0.36 -0.06 16 32 H 0.04 0.20 6.72 -51.93 -0.35 -0.15 16 33 H 0.05 0.27 7.61 -51.93 -0.40 -0.12 16 34 H 0.38 1.77 9.12 45.56 0.42 2.18 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.71 6.91 -51.93 -0.36 0.35 16 37 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 38 H 0.39 2.20 8.42 -40.82 -0.34 1.85 16 39 H 0.40 3.49 8.84 -40.82 -0.36 3.13 16 40 H 0.13 2.51 6.24 -52.49 -0.33 2.19 16 41 H 0.12 2.50 8.06 -52.48 -0.42 2.08 16 42 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 46 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -35.32 392.74 -9.85 -45.17 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.21 Total: 5.73 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -2.41 Total: -12.77 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.40 Total: -41.69 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.37 Total: -15.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.16 Total: -3.80 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.32 -9.85 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.289 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds