Wall clock time and date at job start Tue Mar 31 2020 20:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81400 * 102.99821 * 2 1 4 4 H 1.09006 * 109.47414 * 55.00343 * 3 2 1 5 5 C 1.53002 * 109.47223 * 294.99763 * 3 2 1 6 6 O 1.42892 * 109.47297 * 295.00104 * 5 3 2 7 7 C 1.53005 * 109.46975 * 174.99834 * 3 2 1 8 8 H 1.09000 * 109.46657 * 60.00452 * 7 3 2 9 9 C 1.52993 * 109.47028 * 300.00163 * 7 3 2 10 10 N 1.46496 * 109.47172 * 180.02562 * 7 3 2 11 11 C 1.34774 * 120.00207 * 205.00020 * 10 7 3 12 12 O 1.21588 * 120.00093 * 0.02562 * 11 10 7 13 13 N 1.34778 * 120.00227 * 179.97438 * 11 10 7 14 14 C 1.39954 * 120.00053 * 184.64051 * 13 11 10 15 15 C 1.38864 * 120.06469 * 324.65895 * 14 13 11 16 16 C 1.38125 * 119.92512 * 179.74455 * 15 14 13 17 17 C 1.38281 * 120.06917 * 0.51392 * 16 15 14 18 18 C 1.50695 * 119.92804 * 179.74508 * 17 16 15 19 19 C 1.50703 * 109.47021 * 270.01682 * 18 17 16 20 20 H 1.08004 * 119.99927 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00153 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99950 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00195 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47366 * 59.99602 * 23 21 19 25 25 H 1.48495 * 109.47228 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46955 * 299.99990 * 23 21 19 27 27 C 1.38282 * 120.13730 * 359.76018 * 17 16 15 28 28 C 1.38108 * 120.07319 * 359.97438 * 27 17 16 29 29 H 1.09001 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46938 * 300.00435 * 1 2 3 31 31 H 1.09008 * 109.46851 * 59.99960 * 1 2 3 32 32 H 1.09004 * 109.47019 * 55.00650 * 5 3 2 33 33 H 1.09005 * 109.46724 * 175.00270 * 5 3 2 34 34 H 0.96698 * 113.99984 * 180.02562 * 6 5 3 35 35 H 1.09000 * 109.47637 * 299.99689 * 9 7 3 36 36 H 1.08998 * 109.47642 * 60.00385 * 9 7 3 37 37 H 1.09007 * 109.46775 * 179.97438 * 9 7 3 38 38 H 0.97002 * 120.00195 * 24.99733 * 10 7 3 39 39 H 0.96995 * 120.00281 * 4.63943 * 13 11 10 40 40 H 1.08002 * 120.04181 * 0.02562 * 15 14 13 41 41 H 1.08003 * 119.96083 * 180.23148 * 16 15 14 42 42 H 1.09003 * 109.47232 * 30.02124 * 18 17 16 43 43 H 1.09001 * 109.47288 * 150.02175 * 18 17 16 44 44 H 0.96997 * 120.00264 * 180.02562 * 22 21 19 45 45 H 1.07997 * 119.95952 * 179.97438 * 27 17 16 46 46 H 1.08000 * 120.03586 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7428 2.4016 -1.3074 6 8 2.4729 1.8451 -2.4024 7 6 3.7370 1.9412 0.1258 8 1 4.2295 1.4546 -0.7161 9 6 4.2162 1.3071 1.4331 10 7 4.0665 3.3686 0.1264 11 6 5.2867 3.7788 -0.2727 12 8 6.1140 2.9641 -0.6336 13 7 5.5897 5.0921 -0.2726 14 6 6.8205 5.5263 -0.7777 15 6 7.9580 4.7495 -0.6013 16 6 9.1702 5.1784 -1.1057 17 6 9.2539 6.3847 -1.7764 18 6 10.5792 6.8522 -2.3203 19 6 11.2908 7.6713 -1.2744 20 1 10.8295 7.8363 -0.3118 21 6 12.5310 8.2090 -1.5458 22 7 13.0929 8.0075 -2.7177 23 14 13.4133 9.2235 -0.2491 24 1 13.6396 8.3923 0.9605 25 1 14.7192 9.6843 -0.7851 26 1 12.5821 10.4012 0.1080 27 6 8.1240 7.1631 -1.9487 28 6 6.9079 6.7373 -1.4515 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 0.6796 2.2010 -1.4401 33 1 1.9076 3.4785 -1.2706 34 1 2.2211 2.2022 -3.2650 35 1 3.7236 1.7937 2.2749 36 1 3.9711 0.2451 1.4331 37 1 5.2956 1.4305 1.5224 38 1 3.4064 4.0187 0.4140 39 1 4.9547 5.7363 0.0776 40 1 7.8941 3.8090 -0.0743 41 1 10.0546 4.5729 -0.9721 42 1 11.1896 5.9880 -2.5825 43 1 10.4128 7.4622 -3.2082 44 1 13.9655 8.3855 -2.9086 45 1 8.1927 8.1050 -2.4726 46 1 6.0259 7.3459 -1.5861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932576605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:25 Heat of formation + Delta-G solvation = -80.934308 kcal Electronic energy + Delta-G solvation = -26306.626387 eV Core-core repulsion = 22514.385809 eV Total energy + Delta-G solvation = -3792.240579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71600 -39.95371 -38.53638 -36.71569 -36.07084 -34.99039 -33.10478 -31.79018 -31.68178 -30.60118 -29.25242 -28.29662 -25.36191 -24.53785 -23.80032 -22.91870 -21.81446 -21.63843 -19.73973 -18.71447 -18.50214 -18.36948 -17.15622 -16.93982 -16.82769 -16.37568 -16.03076 -15.89192 -15.82318 -15.38536 -15.29456 -14.62970 -14.49422 -14.39831 -14.27949 -14.14391 -13.95269 -13.64693 -13.55745 -13.30699 -13.20718 -13.17021 -12.89432 -12.59236 -12.45749 -12.36945 -12.11667 -12.03981 -11.68687 -11.52811 -11.22083 -11.01088 -10.86251 -10.67202 -10.58204 -10.20100 -9.72938 -8.81946 -8.58277 -8.16231 -6.31259 0.49530 0.56402 0.61280 1.40584 1.43888 1.52024 1.59728 1.70150 2.09446 2.41713 3.04033 3.12518 3.17442 3.27858 3.49819 3.76276 4.08557 4.16830 4.19699 4.30012 4.37320 4.37982 4.41562 4.49045 4.51247 4.59146 4.61999 4.69422 4.73670 4.78064 4.94667 4.99155 5.16091 5.25453 5.33132 5.35238 5.42697 5.45355 5.53241 5.65505 5.77754 5.97291 6.11605 6.15489 6.29137 6.81153 6.87363 7.01722 7.36916 7.52183 8.91367 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.001887 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.610729 B =14835.880570 C =15063.414494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.275 6.275 3 C -0.058 4.058 4 H 0.132 0.868 5 C 0.079 3.921 6 O -0.581 6.581 7 C 0.191 3.809 8 H 0.066 0.934 9 C -0.161 4.161 10 N -0.714 5.714 11 C 0.702 3.298 12 O -0.615 6.615 13 N -0.666 5.666 14 C 0.138 3.862 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.077 4.077 18 C 0.057 3.943 19 C -0.528 4.528 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.281 1.281 26 H -0.264 1.264 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.393 0.607 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.414 0.586 39 H 0.424 0.576 40 H 0.123 0.877 41 H 0.106 0.894 42 H -0.003 1.003 43 H 0.007 0.993 44 H 0.265 0.735 45 H 0.127 0.873 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.229 -9.769 7.981 36.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.049 6.049 3 C -0.187 4.187 4 H 0.150 0.850 5 C 0.000 4.000 6 O -0.389 6.389 7 C 0.085 3.915 8 H 0.085 0.915 9 C -0.220 4.220 10 N -0.371 5.371 11 C 0.403 3.597 12 O -0.493 6.493 13 N -0.315 5.315 14 C 0.044 3.956 15 C -0.144 4.144 16 C -0.141 4.141 17 C -0.077 4.077 18 C 0.020 3.980 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.196 4.196 22 N -0.571 5.571 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.189 1.189 27 C -0.132 4.132 28 C -0.146 4.146 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.057 0.943 38 H 0.251 0.749 39 H 0.263 0.737 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.015 0.985 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.145 0.855 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -32.479 -11.729 8.055 35.459 hybrid contribution -0.366 2.096 0.033 2.128 sum -32.844 -9.633 8.088 35.171 Atomic orbital electron populations 1.23521 0.91551 1.07456 1.05953 1.87354 1.10023 1.09702 1.97827 1.23558 0.98062 0.95703 1.01353 0.84980 1.22315 0.95020 0.96913 0.85794 1.86579 1.65302 1.68597 1.18389 1.20223 0.92427 0.79973 0.98869 0.91543 1.22232 1.00816 1.01841 0.97082 1.44807 1.12988 1.08536 1.70748 1.16037 0.83154 0.82341 0.78204 1.90950 1.49573 1.53730 1.55092 1.42180 1.17691 1.06637 1.64998 1.17324 0.84388 0.95246 0.98669 1.21126 0.91329 1.00519 1.01453 1.20917 0.97334 0.96450 0.99433 1.20397 0.96344 0.94006 0.96980 1.18087 0.89538 0.94935 0.95430 1.21365 1.02908 1.32130 1.00159 0.92581 1.25961 0.98145 0.97676 0.97791 1.70083 1.17122 1.46346 1.23537 0.85471 0.77592 0.79019 0.78798 1.19549 1.20616 1.18892 1.20962 0.91744 0.99686 1.00770 1.21005 0.98528 0.96439 0.98663 0.87372 0.88841 0.89709 0.91635 0.91275 0.75763 0.90238 0.90648 0.94277 0.74893 0.73713 0.85871 0.87593 0.98469 0.97428 0.92616 0.85471 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.45 113.37 1.18 0.46 16 2 S -0.27 -3.96 20.10 -56.49 -1.14 -5.09 16 3 C -0.06 -0.63 2.28 30.60 0.07 -0.56 16 4 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 5 C 0.08 0.71 6.35 71.98 0.46 1.17 16 6 O -0.58 -9.05 12.53 -148.98 -1.87 -10.92 16 7 C 0.19 3.42 1.96 44.99 0.09 3.51 16 8 H 0.07 1.84 6.99 -2.39 -0.02 1.82 16 9 C -0.16 -2.92 9.24 71.98 0.67 -2.25 16 10 N -0.71 -11.11 4.46 -457.83 -2.04 -13.15 16 11 C 0.70 17.89 8.37 179.05 1.50 19.39 16 12 O -0.61 -22.61 13.46 -3.99 -0.05 -22.67 16 13 N -0.67 -14.76 5.34 -317.17 -1.69 -16.45 16 14 C 0.14 4.36 6.29 38.14 0.24 4.60 16 15 C -0.12 -4.82 8.69 22.39 0.19 -4.62 16 16 C -0.12 -5.43 9.69 22.25 0.22 -5.21 16 17 C -0.08 -3.56 5.07 -19.85 -0.10 -3.66 16 18 C 0.06 3.18 5.10 29.10 0.15 3.33 16 19 C -0.53 -30.90 9.09 25.60 0.23 -30.67 16 20 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 21 C 0.00 0.13 5.46 84.66 0.46 0.59 16 22 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 23 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 27 C -0.11 -4.35 9.69 22.25 0.22 -4.13 16 28 C -0.13 -3.77 9.97 22.39 0.22 -3.55 16 29 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.08 0.39 7.02 -2.39 -0.02 0.37 16 32 H 0.07 0.34 6.72 -2.38 -0.02 0.32 16 33 H 0.07 0.41 7.61 -2.38 -0.02 0.39 16 34 H 0.39 3.17 9.12 -74.06 -0.68 2.49 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.39 6.91 -2.39 -0.02 1.37 16 37 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.41 2.80 8.42 -92.71 -0.78 2.02 16 39 H 0.42 5.30 8.84 -92.71 -0.82 4.48 16 40 H 0.12 4.95 6.24 -2.91 -0.02 4.93 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 42 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 43 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 45 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 46 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -82.26 392.74 0.06 -82.21 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -1.26 Total: 17.68 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 5.80 Total: -21.61 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.45 Total: -86.64 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -1.92 Total: -33.58 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -1.14 Total: -5.09 kcal Total: -82.26 0.06 -82.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932576605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.271 kcal (2) G-P(sol) polarization free energy of solvation -82.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds