Wall clock time and date at job start Tue Mar 31 2020 20:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36207 * 117.00064 * 2 1 4 4 C 1.34083 * 122.50119 * 0.21356 * 3 2 1 5 5 S 1.70599 * 110.97388 * 180.22244 * 4 3 2 6 6 C 1.75812 * 91.62216 * 359.76218 * 5 4 3 7 7 C 1.46550 * 125.42826 * 180.02562 * 6 5 4 8 8 O 1.21706 * 120.00221 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99944 * 359.97380 * 7 6 5 10 10 C 1.46500 * 120.00041 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46956 * 35.00739 * 10 9 7 12 12 C 1.53002 * 109.47388 * 275.00565 * 10 9 7 13 13 C 1.53005 * 109.46922 * 155.00329 * 10 9 7 14 14 C 1.53038 * 109.46055 * 300.07151 * 13 10 9 15 15 C 1.53195 * 109.30952 * 178.61671 * 14 13 10 16 16 N 1.46925 * 108.77700 * 54.63797 * 15 14 13 17 17 C 1.36927 * 120.63422 * 126.41375 * 16 15 14 18 18 H 1.08004 * 120.00295 * 207.65471 * 17 16 15 19 19 C 1.38824 * 120.00136 * 27.65537 * 17 16 15 20 20 N 1.31622 * 119.99539 * 17.37672 * 19 17 16 21 21 Si 1.86798 * 120.00044 * 197.38000 * 19 17 16 22 22 H 1.48500 * 109.47261 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46862 * 119.99851 * 21 19 17 24 24 H 1.48494 * 109.46819 * 239.99815 * 21 19 17 25 25 C 1.46924 * 118.73457 * 306.38435 * 16 15 14 26 26 C 1.53045 * 109.45531 * 180.02562 * 13 10 9 27 27 C 1.36734 * 109.14686 * 0.02562 * 6 5 4 28 28 H 1.08994 * 109.47045 * 300.00586 * 1 2 3 29 29 H 1.09001 * 109.46874 * 60.00230 * 1 2 3 30 30 H 1.09003 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.07994 * 124.51187 * 359.97438 * 4 3 2 32 32 H 0.97005 * 120.00391 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46818 * 59.99720 * 12 10 9 34 34 H 1.08999 * 109.46748 * 180.02562 * 12 10 9 35 35 H 1.09003 * 109.46979 * 299.99793 * 12 10 9 36 36 H 1.09000 * 109.45644 * 60.03281 * 13 10 9 37 37 H 1.08996 * 109.49522 * 298.56430 * 14 13 10 38 38 H 1.08997 * 109.49701 * 58.66563 * 14 13 10 39 39 H 1.08999 * 109.58583 * 294.84362 * 15 14 13 40 40 H 1.08999 * 109.57963 * 174.42280 * 15 14 13 41 41 H 0.96998 * 119.99542 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.59203 * 293.82444 * 25 16 15 43 43 H 1.09004 * 109.58736 * 173.40002 * 25 16 15 44 44 H 1.08996 * 109.49843 * 301.33534 * 26 13 10 45 45 H 1.08994 * 109.49520 * 61.43836 * 26 13 10 46 46 H 1.07999 * 123.37562 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3689 0.0042 5 16 2.4295 3.7035 -0.0032 6 6 3.8354 2.6478 -0.0050 7 6 5.2318 3.0925 -0.0105 8 8 6.1315 2.2730 -0.0108 9 7 5.5196 4.4092 -0.0153 10 6 6.9155 4.8538 -0.0202 11 1 7.5156 4.1603 -0.6092 12 6 7.4434 4.8930 1.4153 13 6 7.0030 6.2525 -0.6343 14 6 6.4734 6.2133 -2.0695 15 6 6.5304 7.6218 -2.6692 16 7 7.9023 8.1331 -2.5461 17 6 8.5728 8.6031 -3.6435 18 1 9.6513 8.5569 -3.6783 19 6 7.8664 9.1392 -4.7116 20 7 6.6146 9.5131 -4.5513 21 14 8.6923 9.3299 -6.3762 22 1 10.0915 8.8392 -6.2936 23 1 7.9493 8.5401 -7.3908 24 1 8.6930 10.7625 -6.7672 25 6 8.5408 8.1309 -1.2229 26 6 8.4615 6.7164 -0.6399 27 6 3.4184 1.3456 -0.0004 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2896 2.4445 0.0075 32 1 4.8026 5.0625 -0.0147 33 1 7.3810 3.8966 1.8527 34 1 8.4818 5.2243 1.4115 35 1 6.8433 5.5867 2.0043 36 1 6.4033 6.9460 -0.0448 37 1 7.0879 5.5389 -2.6658 38 1 5.4421 5.8603 -2.0672 39 1 5.8464 8.2767 -2.1294 40 1 6.2480 7.5826 -3.7213 41 1 6.1209 9.8873 -5.2977 42 1 8.0209 8.8274 -0.5650 43 1 9.5851 8.4277 -1.3206 44 1 8.8455 6.7216 0.3802 45 1 9.0569 6.0372 -1.2499 46 1 4.0961 0.5047 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997255031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:35 Heat of formation + Delta-G solvation = -25.155765 kcal Electronic energy + Delta-G solvation = -26984.729350 eV Core-core repulsion = 23194.907510 eV Total energy + Delta-G solvation = -3789.821839 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.32052 -39.75474 -37.98142 -36.11948 -35.27488 -32.98141 -31.26008 -30.23072 -29.66388 -28.69890 -28.21410 -25.52620 -24.77572 -23.04325 -21.98927 -21.49848 -20.52617 -19.75732 -19.26564 -18.66751 -17.42644 -16.78444 -16.27181 -16.17813 -16.05834 -15.09943 -14.84712 -14.77998 -14.26239 -14.03996 -13.53287 -13.45367 -13.37516 -13.34616 -13.11162 -13.03089 -12.87729 -12.38655 -12.20480 -12.03886 -11.67491 -11.52933 -11.30858 -11.28035 -11.20141 -10.96633 -10.68766 -10.42339 -10.25053 -10.17692 -10.08951 -9.87945 -9.52628 -9.46855 -9.23524 -8.97655 -8.45763 -8.33174 -6.65929 -5.77988 -3.19376 0.20228 1.15434 1.58384 2.13787 2.81476 3.09230 3.25594 3.37901 3.46048 3.48307 4.50892 4.52550 4.62896 4.73778 4.77510 4.94402 4.96919 5.09135 5.20880 5.31921 5.38864 5.39600 5.51025 5.62785 5.63920 5.72463 5.76627 5.82151 5.97692 6.09117 6.12716 6.27825 6.32450 6.42547 6.56909 6.62171 6.69637 6.78217 6.84413 6.86853 6.99838 7.37040 7.43812 7.66342 7.81238 8.09552 8.46367 9.22868 9.86685 10.43070 11.30462 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002566 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.225569 B =10907.782353 C =11949.924370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.306 6.306 3 C 0.103 3.897 4 C -0.343 4.343 5 S 0.233 5.767 6 C -0.235 4.235 7 C 0.590 3.410 8 O -0.527 6.527 9 N -0.712 5.712 10 C 0.145 3.855 11 H 0.089 0.911 12 C -0.163 4.163 13 C -0.085 4.085 14 C -0.135 4.135 15 C 0.171 3.829 16 N -0.593 5.593 17 C -0.249 4.249 18 H 0.065 0.935 19 C 0.000 4.000 20 N -0.903 5.903 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.125 4.125 27 C -0.071 4.071 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.171 0.829 32 H 0.397 0.603 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.087 0.913 41 H 0.252 0.748 42 H 0.017 0.983 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.433 -14.251 12.917 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.046 3.954 4 C -0.481 4.481 5 S 0.500 5.500 6 C -0.356 4.356 7 C 0.375 3.625 8 O -0.405 6.405 9 N -0.362 5.362 10 C 0.041 3.959 11 H 0.107 0.893 12 C -0.221 4.221 13 C -0.104 4.104 14 C -0.174 4.174 15 C 0.045 3.955 16 N -0.315 5.315 17 C -0.379 4.379 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.548 5.548 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.019 3.981 26 C -0.165 4.165 27 C -0.106 4.106 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.188 0.812 32 H 0.232 0.768 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.013 -13.348 12.780 22.041 hybrid contribution -0.439 -1.033 -0.913 1.447 sum -12.452 -14.381 11.867 22.421 Atomic orbital electron populations 1.23049 0.78197 1.04025 1.01313 1.86121 1.21281 1.25138 1.89449 1.17552 0.91545 0.84767 1.01563 1.25074 1.05810 0.97518 1.19679 1.83026 0.92694 1.06175 1.68151 1.24528 0.97959 0.97516 1.15583 1.16821 0.86073 0.82902 0.76703 1.90835 1.46659 1.53019 1.50030 1.45977 1.09740 1.06038 1.74493 1.21231 0.80605 0.97198 0.96819 0.89272 1.22220 1.01830 1.01838 0.96224 1.21349 0.98437 0.93264 0.97353 1.22237 0.98765 1.01743 0.94647 1.20766 0.85616 0.88007 1.01062 1.44066 1.13292 1.71508 1.02673 1.19232 0.91054 1.33357 0.94247 0.91681 1.25027 0.96697 0.98446 0.99623 1.70044 1.09998 1.44478 1.30286 0.86249 0.78943 0.77280 0.84486 1.20262 1.21592 1.21782 1.20894 0.96955 0.92456 0.87760 1.22083 0.94532 1.00092 0.99806 1.19943 0.92851 0.96961 1.00819 0.92757 0.92673 0.88096 0.81161 0.76826 0.92572 0.90921 0.92579 0.91417 0.92581 0.93574 0.96571 0.89505 0.93765 0.96549 0.92785 0.92602 0.92088 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.93 101.05 1.00 1.17 16 2 O -0.31 -3.05 10.56 -20.40 -0.22 -3.26 16 3 C 0.10 1.09 6.61 -41.23 -0.27 0.81 16 4 C -0.34 -3.06 9.81 29.27 0.29 -2.77 16 5 S 0.23 2.15 22.15 -107.50 -2.38 -0.23 16 6 C -0.23 -2.83 6.45 -36.78 -0.24 -3.07 16 7 C 0.59 8.38 7.75 -12.91 -0.10 8.28 16 8 O -0.53 -9.17 16.50 5.18 0.09 -9.09 16 9 N -0.71 -9.19 4.36 -55.15 -0.24 -9.43 16 10 C 0.15 2.02 2.16 -67.93 -0.15 1.87 16 11 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 12 C -0.16 -1.98 9.14 37.16 0.34 -1.64 16 13 C -0.08 -1.31 1.79 -90.57 -0.16 -1.48 16 14 C -0.13 -2.47 5.22 -26.61 -0.14 -2.61 16 15 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 16 N -0.59 -14.58 2.99 -172.31 -0.52 -15.09 16 17 C -0.25 -6.80 9.59 -15.06 -0.14 -6.94 16 18 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 19 C 0.00 0.01 4.91 -17.42 -0.09 -0.08 16 20 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 21 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 26 C -0.13 -2.06 5.04 -26.60 -0.13 -2.19 16 27 C -0.07 -0.84 10.00 -40.31 -0.40 -1.24 16 28 H 0.05 0.26 7.83 -51.93 -0.41 -0.15 16 29 H 0.05 0.28 7.85 -51.93 -0.41 -0.13 16 30 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.17 1.10 6.96 -52.49 -0.37 0.74 16 32 H 0.40 4.45 7.50 -40.82 -0.31 4.14 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.76 7.40 -51.93 -0.38 0.37 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.29 6.04 -51.93 -0.31 1.98 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 44 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.16 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -31.96 380.11 -9.19 -41.15 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.01 Total: 1.93 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -0.24 Total: -3.00 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.14 Total: -49.92 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.13 Total: -12.35 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.96 -9.19 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997255031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.999 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds