Wall clock time and date at job start Tue Mar 31 2020 20:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36207 * 117.00064 * 2 1 4 4 C 1.34083 * 122.50119 * 0.21356 * 3 2 1 5 5 S 1.70599 * 110.97388 * 180.22244 * 4 3 2 6 6 C 1.75812 * 91.62216 * 359.76218 * 5 4 3 7 7 C 1.46550 * 125.42826 * 180.02562 * 6 5 4 8 8 O 1.21706 * 120.00221 * 179.97438 * 7 6 5 9 9 N 1.34775 * 119.99944 * 359.97380 * 7 6 5 10 10 C 1.46500 * 120.00041 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46956 * 35.00739 * 10 9 7 12 12 C 1.53002 * 109.47388 * 275.00565 * 10 9 7 13 13 C 1.53005 * 109.46922 * 155.00329 * 10 9 7 14 14 C 1.53038 * 109.46055 * 300.07151 * 13 10 9 15 15 C 1.53195 * 109.30952 * 178.61671 * 14 13 10 16 16 N 1.46925 * 108.77700 * 54.63797 * 15 14 13 17 17 C 1.36927 * 120.63422 * 126.41375 * 16 15 14 18 18 H 1.08004 * 120.00295 * 207.65471 * 17 16 15 19 19 C 1.38824 * 120.00136 * 27.65537 * 17 16 15 20 20 N 1.31622 * 119.99539 * 17.37672 * 19 17 16 21 21 Si 1.86798 * 120.00044 * 197.38000 * 19 17 16 22 22 H 1.48500 * 109.47261 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46862 * 119.99851 * 21 19 17 24 24 H 1.48494 * 109.46819 * 239.99815 * 21 19 17 25 25 C 1.46924 * 118.73457 * 306.38435 * 16 15 14 26 26 C 1.53045 * 109.45531 * 180.02562 * 13 10 9 27 27 C 1.36734 * 109.14686 * 0.02562 * 6 5 4 28 28 H 1.08994 * 109.47045 * 300.00586 * 1 2 3 29 29 H 1.09001 * 109.46874 * 60.00230 * 1 2 3 30 30 H 1.09003 * 109.47279 * 180.02562 * 1 2 3 31 31 H 1.07994 * 124.51187 * 359.97438 * 4 3 2 32 32 H 0.97005 * 120.00391 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.46818 * 59.99720 * 12 10 9 34 34 H 1.08999 * 109.46748 * 180.02562 * 12 10 9 35 35 H 1.09003 * 109.46979 * 299.99793 * 12 10 9 36 36 H 1.09000 * 109.45644 * 60.03281 * 13 10 9 37 37 H 1.08996 * 109.49522 * 298.56430 * 14 13 10 38 38 H 1.08997 * 109.49701 * 58.66563 * 14 13 10 39 39 H 1.08999 * 109.58583 * 294.84362 * 15 14 13 40 40 H 1.08999 * 109.57963 * 174.42280 * 15 14 13 41 41 H 0.96998 * 119.99542 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.59203 * 293.82444 * 25 16 15 43 43 H 1.09004 * 109.58736 * 173.40002 * 25 16 15 44 44 H 1.08996 * 109.49843 * 301.33534 * 26 13 10 45 45 H 1.08994 * 109.49520 * 61.43836 * 26 13 10 46 46 H 1.07999 * 123.37562 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3689 0.0042 5 16 2.4295 3.7035 -0.0032 6 6 3.8354 2.6478 -0.0050 7 6 5.2318 3.0925 -0.0105 8 8 6.1315 2.2730 -0.0108 9 7 5.5196 4.4092 -0.0153 10 6 6.9155 4.8538 -0.0202 11 1 7.5156 4.1603 -0.6092 12 6 7.4434 4.8930 1.4153 13 6 7.0030 6.2525 -0.6343 14 6 6.4734 6.2133 -2.0695 15 6 6.5304 7.6218 -2.6692 16 7 7.9023 8.1331 -2.5461 17 6 8.5728 8.6031 -3.6435 18 1 9.6513 8.5569 -3.6783 19 6 7.8664 9.1392 -4.7116 20 7 6.6146 9.5131 -4.5513 21 14 8.6923 9.3299 -6.3762 22 1 10.0915 8.8392 -6.2936 23 1 7.9493 8.5401 -7.3908 24 1 8.6930 10.7625 -6.7672 25 6 8.5408 8.1309 -1.2229 26 6 8.4615 6.7164 -0.6399 27 6 3.4184 1.3456 -0.0004 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2896 2.4445 0.0075 32 1 4.8026 5.0625 -0.0147 33 1 7.3810 3.8966 1.8527 34 1 8.4818 5.2243 1.4115 35 1 6.8433 5.5867 2.0043 36 1 6.4033 6.9460 -0.0448 37 1 7.0879 5.5389 -2.6658 38 1 5.4421 5.8603 -2.0672 39 1 5.8464 8.2767 -2.1294 40 1 6.2480 7.5826 -3.7213 41 1 6.1209 9.8873 -5.2977 42 1 8.0209 8.8274 -0.5650 43 1 9.5851 8.4277 -1.3206 44 1 8.8455 6.7216 0.3802 45 1 9.0569 6.0372 -1.2499 46 1 4.0961 0.5047 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997255031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:34 Heat of formation + Delta-G solvation = -44.989616 kcal Electronic energy + Delta-G solvation = -26985.589410 eV Core-core repulsion = 23194.907510 eV Total energy + Delta-G solvation = -3790.681900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26912 -40.65898 -39.40370 -37.07780 -36.58384 -34.58962 -32.80199 -31.82253 -30.83673 -29.87788 -28.74956 -27.16960 -25.83757 -24.41890 -23.57692 -22.63016 -21.71327 -21.00723 -20.40115 -19.70630 -18.65557 -18.12026 -17.28276 -17.16252 -16.81354 -16.78208 -16.10972 -15.78423 -15.51078 -15.29889 -15.22608 -14.87309 -14.78197 -14.36134 -14.16823 -13.97673 -13.82957 -13.70954 -13.49405 -13.19532 -13.04834 -12.76282 -12.63618 -12.59761 -12.38933 -12.15946 -12.03940 -11.94702 -11.92446 -11.79103 -11.47808 -11.35558 -11.10514 -11.02094 -10.52153 -10.24553 -9.94274 -9.05435 -8.64865 -7.86040 -5.29609 -0.64986 0.36887 0.81294 1.29846 1.44927 1.47580 1.57360 1.92777 2.07402 2.49564 2.51984 3.27875 3.64242 3.72346 3.78847 3.94276 3.98181 4.06429 4.09498 4.38296 4.40777 4.42508 4.48302 4.53838 4.59227 4.61523 4.74355 4.76917 4.81660 4.82722 4.93396 4.99019 5.02446 5.07845 5.12390 5.21535 5.30662 5.40676 5.44385 5.46719 5.58224 5.68515 5.81006 6.23590 6.38748 6.41821 7.04254 7.17687 7.90473 8.40509 9.19935 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002566 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.225569 B =10907.782353 C =11949.924370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.087 3.913 4 C -0.329 4.329 5 S 0.281 5.719 6 C -0.264 4.264 7 C 0.590 3.410 8 O -0.568 6.568 9 N -0.706 5.706 10 C 0.153 3.847 11 H 0.068 0.932 12 C -0.156 4.156 13 C -0.074 4.074 14 C -0.121 4.121 15 C 0.178 3.822 16 N -0.613 5.613 17 C -0.259 4.259 18 H 0.063 0.937 19 C -0.052 4.052 20 N -0.933 5.933 21 Si 0.961 3.039 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.140 3.860 26 C -0.115 4.115 27 C -0.080 4.080 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.199 0.801 32 H 0.407 0.593 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.003 0.997 40 H 0.048 0.952 41 H 0.249 0.751 42 H 0.020 0.980 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.604 -14.440 14.266 24.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.242 6.242 3 C 0.030 3.970 4 C -0.467 4.467 5 S 0.548 5.452 6 C -0.385 4.385 7 C 0.377 3.623 8 O -0.449 6.449 9 N -0.356 5.356 10 C 0.049 3.951 11 H 0.086 0.914 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.160 4.160 15 C 0.052 3.948 16 N -0.336 5.336 17 C -0.389 4.389 18 H 0.081 0.919 19 C -0.247 4.247 20 N -0.579 5.579 21 Si 0.790 3.210 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.015 3.985 26 C -0.154 4.154 27 C -0.116 4.116 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.217 0.783 32 H 0.244 0.756 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.021 0.979 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.190 -13.523 14.155 23.606 hybrid contribution -0.157 -0.963 -1.305 1.630 sum -13.348 -14.487 12.850 23.519 Atomic orbital electron populations 1.23350 0.76106 1.05655 1.02342 1.86099 1.23493 1.25004 1.89593 1.17511 0.91146 0.85660 1.02646 1.25453 1.07233 0.96831 1.17209 1.82824 0.90709 1.04991 1.66660 1.24346 0.97953 0.98489 1.17739 1.17084 0.86692 0.82736 0.75796 1.90806 1.48121 1.53981 1.51994 1.45883 1.09699 1.06005 1.74030 1.21024 0.81027 0.95274 0.97733 0.91423 1.22166 1.02649 1.01969 0.94662 1.21228 0.97965 0.94650 0.95478 1.22023 0.99889 0.97996 0.96098 1.20573 0.84908 0.90349 0.98947 1.44351 1.13708 1.71745 1.03830 1.19524 0.91286 1.32623 0.95489 0.91885 1.25729 0.97398 0.98921 1.02650 1.70177 1.11204 1.45693 1.30828 0.85292 0.78330 0.76872 0.80496 1.19344 1.21847 1.21813 1.21078 0.96439 0.94997 0.85974 1.21960 0.95108 0.97030 1.01320 1.20010 0.93777 0.96783 1.01019 0.91457 0.91751 0.86397 0.78346 0.75644 0.93318 0.89882 0.90865 0.89998 0.94352 0.91657 0.97911 0.93312 0.94189 0.96175 0.92985 0.88940 0.93150 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.93 113.37 1.13 1.31 16 2 O -0.33 -6.16 10.56 -95.92 -1.01 -7.17 16 3 C 0.09 1.73 6.61 21.20 0.14 1.87 16 4 C -0.33 -5.02 9.81 66.87 0.66 -4.36 16 5 S 0.28 4.53 22.15 -56.49 -1.25 3.28 16 6 C -0.26 -6.20 6.45 24.09 0.16 -6.04 16 7 C 0.59 16.60 7.75 86.41 0.67 17.27 16 8 O -0.57 -20.15 16.50 -4.37 -0.07 -20.22 16 9 N -0.71 -17.25 4.36 -446.62 -1.95 -19.20 16 10 C 0.15 4.02 2.16 44.99 0.10 4.12 16 11 H 0.07 2.12 7.58 -2.39 -0.02 2.10 16 12 C -0.16 -3.40 9.14 71.98 0.66 -2.74 16 13 C -0.07 -2.16 1.79 -10.76 -0.02 -2.18 16 14 C -0.12 -4.38 5.22 30.67 0.16 -4.22 16 15 C 0.18 8.37 5.31 86.36 0.46 8.83 16 16 N -0.61 -30.37 2.99 -699.07 -2.09 -32.46 16 17 C -0.26 -14.29 9.59 84.04 0.81 -13.49 16 18 H 0.06 3.43 7.89 -2.91 -0.02 3.40 16 19 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 20 N -0.93 -54.95 11.19 21.66 0.24 -54.70 16 21 Si 0.96 45.32 29.59 68.60 2.03 47.35 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 24 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 25 C 0.14 5.55 6.52 86.37 0.56 6.11 16 26 C -0.11 -3.54 5.04 30.68 0.15 -3.38 16 27 C -0.08 -1.90 10.00 21.80 0.22 -1.68 16 28 H 0.07 0.45 7.83 -2.39 -0.02 0.43 16 29 H 0.06 0.48 7.85 -2.39 -0.02 0.46 16 30 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.20 1.80 6.96 -2.91 -0.02 1.78 16 32 H 0.41 8.23 7.50 -92.70 -0.69 7.54 16 33 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.63 6.40 -2.39 -0.02 1.62 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 2.09 7.40 -2.39 -0.02 2.07 16 39 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.05 2.66 6.04 -2.39 -0.01 2.64 16 41 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 42 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 44 H 0.09 2.22 6.36 -2.39 -0.02 2.20 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -71.30 380.11 2.45 -68.85 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.30 Total: 15.37 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: 6.26 Total: -1.08 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.80 Total: -106.36 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.09 Total: -27.39 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.25 Total: 3.28 kcal Total: -71.30 2.45 -68.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997255031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.858 kcal (2) G-P(sol) polarization free energy of solvation -71.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds