Wall clock time and date at job start Tue Mar 31 2020 20:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36221 * 116.99394 * 2 1 4 4 C 1.34076 * 122.50192 * 359.97438 * 3 2 1 5 5 S 1.70599 * 110.97457 * 179.78109 * 4 3 2 6 6 C 1.75813 * 91.62272 * 0.30677 * 5 4 3 7 7 C 1.46545 * 125.43077 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00121 * 179.69306 * 7 6 5 9 9 N 1.34773 * 119.99799 * 359.68447 * 7 6 5 10 10 C 1.46498 * 120.00305 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46759 * 325.00222 * 10 9 7 12 12 C 1.53001 * 109.46978 * 84.99990 * 10 9 7 13 13 C 1.52992 * 109.47394 * 205.00335 * 10 9 7 14 14 C 1.53043 * 109.46181 * 300.02266 * 13 10 9 15 15 C 1.53191 * 109.31354 * 178.60193 * 14 13 10 16 16 N 1.46923 * 108.76746 * 54.65580 * 15 14 13 17 17 C 1.36939 * 120.62879 * 126.40124 * 16 15 14 18 18 H 1.08001 * 119.99992 * 332.61781 * 17 16 15 19 19 C 1.38811 * 119.99938 * 152.61292 * 17 16 15 20 20 N 1.31617 * 120.00447 * 159.34993 * 19 17 16 21 21 Si 1.86807 * 119.99771 * 339.34445 * 19 17 16 22 22 H 1.48494 * 109.46884 * 92.94749 * 21 19 17 23 23 H 1.48499 * 109.46723 * 212.94403 * 21 19 17 24 24 H 1.48497 * 109.47056 * 332.94360 * 21 19 17 25 25 C 1.46925 * 118.73864 * 306.38660 * 16 15 14 26 26 C 1.53039 * 109.46211 * 179.97438 * 13 10 9 27 27 C 1.36744 * 109.14188 * 359.69588 * 6 5 4 28 28 H 1.09002 * 109.47316 * 299.99468 * 1 2 3 29 29 H 1.08994 * 109.47711 * 59.99992 * 1 2 3 30 30 H 1.09003 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08003 * 124.51181 * 0.02562 * 4 3 2 32 32 H 0.97006 * 120.00245 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47265 * 299.99898 * 12 10 9 34 34 H 1.09003 * 109.47185 * 60.00494 * 12 10 9 35 35 H 1.09006 * 109.46871 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.46315 * 59.99743 * 13 10 9 37 37 H 1.08995 * 109.50105 * 298.56726 * 14 13 10 38 38 H 1.09005 * 109.49233 * 58.66339 * 14 13 10 39 39 H 1.09007 * 109.59844 * 294.86953 * 15 14 13 40 40 H 1.08998 * 109.70205 * 174.51112 * 15 14 13 41 41 H 0.96998 * 120.00341 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.58427 * 293.81521 * 25 16 15 43 43 H 1.09002 * 109.70350 * 173.45954 * 25 16 15 44 44 H 1.09001 * 109.49791 * 301.33878 * 26 13 10 45 45 H 1.09006 * 109.49924 * 61.43049 * 26 13 10 46 46 H 1.08001 * 123.37140 * 180.23241 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2138 0.0000 4 6 1.3667 2.3690 -0.0005 5 16 2.4292 3.7037 0.0057 6 6 3.8352 2.6482 -0.0003 7 6 5.2315 3.0930 0.0007 8 8 6.1312 2.2735 0.0018 9 7 5.5192 4.4097 0.0003 10 6 6.9150 4.8545 0.0007 11 1 7.5165 4.1629 0.5907 12 6 7.4397 4.8889 -1.4361 13 6 7.0038 6.2551 0.6098 14 6 6.1587 7.2258 -0.2184 15 6 6.2219 8.6195 0.4144 16 7 7.6308 9.0127 0.5521 17 6 8.0771 10.2006 0.0374 18 1 7.5788 10.6418 -0.8131 19 6 9.1700 10.8376 0.6088 20 7 9.8506 11.7258 -0.0842 21 14 9.6748 10.4345 2.3617 22 1 10.7014 9.3616 2.3468 23 1 10.2367 11.6484 3.0065 24 1 8.4875 9.9730 3.1249 25 6 8.5517 8.1073 1.2527 26 6 8.4621 6.7193 0.6107 27 6 3.4182 1.3459 0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2893 2.4445 -0.0006 32 1 4.8020 5.0629 -0.0004 33 1 7.3766 3.8910 -1.8700 34 1 6.8383 5.5805 -2.0261 35 1 8.4785 5.2195 -1.4357 36 1 6.6299 6.2304 1.6334 37 1 6.5475 7.2700 -1.2357 38 1 5.1245 6.8820 -0.2382 39 1 5.7512 8.5965 1.3973 40 1 5.7031 9.3360 -0.2224 41 1 10.6141 12.1712 0.3153 42 1 8.2710 8.0425 2.3039 43 1 9.5713 8.4834 1.1692 44 1 9.0677 6.0149 1.1810 45 1 8.8290 6.7682 -0.4145 46 1 4.0960 0.5050 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997706133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:41 Heat of formation + Delta-G solvation = -16.930803 kcal Electronic energy + Delta-G solvation = -27002.839810 eV Core-core repulsion = 23213.374631 eV Total energy + Delta-G solvation = -3789.465178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.43230 -39.90459 -38.33472 -36.23452 -35.46199 -33.00645 -31.54227 -30.41275 -29.93852 -28.94842 -28.29771 -25.67289 -24.81156 -23.32759 -22.80152 -21.53554 -20.73871 -19.86464 -19.01980 -18.81419 -17.51309 -16.77414 -16.45306 -16.26425 -16.14583 -15.23974 -15.12623 -14.90252 -14.55849 -14.27876 -14.05758 -13.63561 -13.48603 -13.44043 -13.18075 -13.11977 -12.98231 -12.61761 -12.21212 -12.11892 -11.88915 -11.78706 -11.71170 -11.40170 -11.38403 -11.06780 -10.71344 -10.63150 -10.45340 -10.25796 -10.11513 -9.81358 -9.63085 -9.43814 -9.35028 -9.13002 -8.61750 -8.42716 -6.97738 -5.95074 -3.30649 0.10222 1.05411 1.48431 2.04353 2.72131 2.98367 3.15618 3.32146 3.48603 3.51199 4.43006 4.52893 4.55253 4.63991 4.70505 4.85676 4.86617 4.96271 5.01379 5.02532 5.16785 5.29223 5.40165 5.49699 5.54093 5.55193 5.67050 5.71425 5.85324 5.87543 6.00483 6.07276 6.12932 6.21511 6.31033 6.43496 6.46511 6.47602 6.61492 6.65813 6.70104 6.78521 6.97845 7.30989 7.96297 7.98426 8.32622 8.94272 9.72261 10.10265 11.20898 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.002321 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.297866 B =12061.405645 C =12489.082966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.103 3.897 4 C -0.342 4.342 5 S 0.231 5.769 6 C -0.236 4.236 7 C 0.589 3.411 8 O -0.526 6.526 9 N -0.715 5.715 10 C 0.147 3.853 11 H 0.088 0.912 12 C -0.165 4.165 13 C -0.088 4.088 14 C -0.132 4.132 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.259 4.259 18 H 0.085 0.915 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.126 3.874 26 C -0.127 4.127 27 C -0.069 4.069 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.171 0.829 32 H 0.397 0.603 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.021 0.979 40 H 0.063 0.937 41 H 0.262 0.738 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.962 -20.794 -0.024 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.046 3.954 4 C -0.480 4.480 5 S 0.497 5.503 6 C -0.357 4.357 7 C 0.374 3.626 8 O -0.404 6.404 9 N -0.367 5.367 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.223 4.223 13 C -0.107 4.107 14 C -0.171 4.171 15 C 0.023 3.977 16 N -0.329 5.329 17 C -0.387 4.387 18 H 0.102 0.898 19 C -0.176 4.176 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.196 1.196 25 C 0.000 4.000 26 C -0.167 4.167 27 C -0.104 4.104 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.189 0.811 32 H 0.233 0.767 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.039 0.961 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.333 -19.827 -0.027 27.004 hybrid contribution -0.312 -1.320 1.006 1.689 sum -18.645 -21.146 0.979 28.210 Atomic orbital electron populations 1.23056 0.78137 1.04090 1.01322 1.86129 1.21329 1.25081 1.89417 1.17557 0.91548 0.84803 1.01493 1.25075 1.05826 0.97465 1.19603 1.82997 0.92723 1.06263 1.68317 1.24522 0.97920 0.97529 1.15754 1.16843 0.86106 0.82915 0.76710 1.90841 1.46646 1.53031 1.49917 1.46093 1.09837 1.06069 1.74701 1.21161 0.80537 0.96299 0.97651 0.89362 1.22255 1.02237 1.01872 0.95921 1.21338 0.97945 0.92008 0.99377 1.22140 0.97345 0.97140 1.00501 1.20898 0.86321 0.93140 0.97353 1.44336 1.03136 1.18913 1.66497 1.18911 1.13254 0.96801 1.09742 0.89753 1.25282 0.97756 0.96695 0.97915 1.69835 1.19252 1.29961 1.36097 0.86951 0.78209 0.75960 0.87525 1.21623 1.23234 1.19646 1.21323 0.95431 0.89161 0.94038 1.22087 0.94050 0.98189 1.02360 1.19957 0.92880 0.96963 1.00642 0.92694 0.92695 0.88045 0.81111 0.76677 0.92678 0.91857 0.90770 0.91131 0.91044 0.93430 0.96147 0.91865 0.92796 0.95854 0.90874 0.92568 0.90946 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.93 101.05 1.00 1.15 16 2 O -0.31 -2.78 10.56 -20.45 -0.22 -2.99 16 3 C 0.10 0.99 6.61 -41.23 -0.27 0.72 16 4 C -0.34 -2.70 9.81 29.27 0.29 -2.41 16 5 S 0.23 1.86 22.15 -107.50 -2.38 -0.52 16 6 C -0.24 -2.58 6.45 -36.78 -0.24 -2.82 16 7 C 0.59 7.70 7.75 -12.91 -0.10 7.60 16 8 O -0.53 -8.57 16.50 5.19 0.09 -8.49 16 9 N -0.72 -8.41 4.99 -55.16 -0.28 -8.69 16 10 C 0.15 1.91 2.40 -67.93 -0.16 1.75 16 11 H 0.09 1.24 7.58 -51.93 -0.39 0.85 16 12 C -0.16 -2.12 8.78 37.16 0.33 -1.80 16 13 C -0.09 -1.24 2.14 -90.58 -0.19 -1.44 16 14 C -0.13 -1.92 4.81 -26.61 -0.13 -2.04 16 15 C 0.15 2.73 6.52 -3.71 -0.02 2.71 16 16 N -0.61 -13.82 2.77 -172.32 -0.48 -14.30 16 17 C -0.26 -7.07 10.04 -15.06 -0.15 -7.22 16 18 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 19 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 20 N -0.91 -27.60 13.97 55.49 0.78 -26.83 16 21 Si 0.88 22.21 24.35 -169.99 -4.14 18.07 16 22 H -0.29 -7.01 6.62 56.52 0.37 -6.63 16 23 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.27 -6.71 6.63 56.52 0.37 -6.33 16 25 C 0.13 2.65 4.20 -3.71 -0.02 2.64 16 26 C -0.13 -2.12 4.96 -26.61 -0.13 -2.25 16 27 C -0.07 -0.75 10.00 -40.31 -0.40 -1.15 16 28 H 0.05 0.22 7.84 -51.93 -0.41 -0.19 16 29 H 0.05 0.22 7.84 -51.93 -0.41 -0.19 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.17 0.94 6.96 -52.48 -0.37 0.57 16 32 H 0.40 3.97 5.95 -40.82 -0.24 3.73 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 35 H 0.07 0.96 6.46 -51.93 -0.34 0.63 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.10 6.51 -51.93 -0.34 0.76 16 38 H 0.05 0.55 6.46 -51.93 -0.34 0.21 16 39 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 40 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.02 0.49 7.07 -51.93 -0.37 0.13 16 43 H 0.07 1.71 4.50 -51.93 -0.23 1.48 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 1.24 6.51 -51.93 -0.34 0.90 16 46 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 368.50 15.07 5.55 5.55 Total: -1.00 -32.72 368.50 -8.03 -40.75 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.66 Total: 1.47 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.30 Total: -4.03 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: 0.02 Total: -49.81 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.13 Total: -11.48 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.38 Total: -0.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.72 -8.03 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997706133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.819 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds