Wall clock time and date at job start Tue Mar 31 2020 20:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36221 * 116.99394 * 2 1 4 4 C 1.34076 * 122.50192 * 359.97438 * 3 2 1 5 5 S 1.70599 * 110.97457 * 179.78109 * 4 3 2 6 6 C 1.75813 * 91.62272 * 0.30677 * 5 4 3 7 7 C 1.46545 * 125.43077 * 179.97438 * 6 5 4 8 8 O 1.21704 * 120.00121 * 179.69306 * 7 6 5 9 9 N 1.34773 * 119.99799 * 359.68447 * 7 6 5 10 10 C 1.46498 * 120.00305 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46759 * 325.00222 * 10 9 7 12 12 C 1.53001 * 109.46978 * 84.99990 * 10 9 7 13 13 C 1.52992 * 109.47394 * 205.00335 * 10 9 7 14 14 C 1.53043 * 109.46181 * 300.02266 * 13 10 9 15 15 C 1.53191 * 109.31354 * 178.60193 * 14 13 10 16 16 N 1.46923 * 108.76746 * 54.65580 * 15 14 13 17 17 C 1.36939 * 120.62879 * 126.40124 * 16 15 14 18 18 H 1.08001 * 119.99992 * 332.61781 * 17 16 15 19 19 C 1.38811 * 119.99938 * 152.61292 * 17 16 15 20 20 N 1.31617 * 120.00447 * 159.34993 * 19 17 16 21 21 Si 1.86807 * 119.99771 * 339.34445 * 19 17 16 22 22 H 1.48494 * 109.46884 * 92.94749 * 21 19 17 23 23 H 1.48499 * 109.46723 * 212.94403 * 21 19 17 24 24 H 1.48497 * 109.47056 * 332.94360 * 21 19 17 25 25 C 1.46925 * 118.73864 * 306.38660 * 16 15 14 26 26 C 1.53039 * 109.46211 * 179.97438 * 13 10 9 27 27 C 1.36744 * 109.14188 * 359.69588 * 6 5 4 28 28 H 1.09002 * 109.47316 * 299.99468 * 1 2 3 29 29 H 1.08994 * 109.47711 * 59.99992 * 1 2 3 30 30 H 1.09003 * 109.46592 * 179.97438 * 1 2 3 31 31 H 1.08003 * 124.51181 * 0.02562 * 4 3 2 32 32 H 0.97006 * 120.00245 * 0.02562 * 9 7 6 33 33 H 1.08999 * 109.47265 * 299.99898 * 12 10 9 34 34 H 1.09003 * 109.47185 * 60.00494 * 12 10 9 35 35 H 1.09006 * 109.46871 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.46315 * 59.99743 * 13 10 9 37 37 H 1.08995 * 109.50105 * 298.56726 * 14 13 10 38 38 H 1.09005 * 109.49233 * 58.66339 * 14 13 10 39 39 H 1.09007 * 109.59844 * 294.86953 * 15 14 13 40 40 H 1.08998 * 109.70205 * 174.51112 * 15 14 13 41 41 H 0.96998 * 120.00341 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.58427 * 293.81521 * 25 16 15 43 43 H 1.09002 * 109.70350 * 173.45954 * 25 16 15 44 44 H 1.09001 * 109.49791 * 301.33878 * 26 13 10 45 45 H 1.09006 * 109.49924 * 61.43049 * 26 13 10 46 46 H 1.08001 * 123.37140 * 180.23241 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2138 0.0000 4 6 1.3667 2.3690 -0.0005 5 16 2.4292 3.7037 0.0057 6 6 3.8352 2.6482 -0.0003 7 6 5.2315 3.0930 0.0007 8 8 6.1312 2.2735 0.0018 9 7 5.5192 4.4097 0.0003 10 6 6.9150 4.8545 0.0007 11 1 7.5165 4.1629 0.5907 12 6 7.4397 4.8889 -1.4361 13 6 7.0038 6.2551 0.6098 14 6 6.1587 7.2258 -0.2184 15 6 6.2219 8.6195 0.4144 16 7 7.6308 9.0127 0.5521 17 6 8.0771 10.2006 0.0374 18 1 7.5788 10.6418 -0.8131 19 6 9.1700 10.8376 0.6088 20 7 9.8506 11.7258 -0.0842 21 14 9.6748 10.4345 2.3617 22 1 10.7014 9.3616 2.3468 23 1 10.2367 11.6484 3.0065 24 1 8.4875 9.9730 3.1249 25 6 8.5517 8.1073 1.2527 26 6 8.4621 6.7193 0.6107 27 6 3.4182 1.3459 0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2893 2.4445 -0.0006 32 1 4.8020 5.0629 -0.0004 33 1 7.3766 3.8910 -1.8700 34 1 6.8383 5.5805 -2.0261 35 1 8.4785 5.2195 -1.4357 36 1 6.6299 6.2304 1.6334 37 1 6.5475 7.2700 -1.2357 38 1 5.1245 6.8820 -0.2382 39 1 5.7512 8.5965 1.3973 40 1 5.7031 9.3360 -0.2224 41 1 10.6141 12.1712 0.3153 42 1 8.2710 8.0425 2.3039 43 1 9.5713 8.4834 1.1692 44 1 9.0677 6.0149 1.1810 45 1 8.8290 6.7682 -0.4145 46 1 4.0960 0.5050 0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997706133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:40 Heat of formation + Delta-G solvation = -39.154279 kcal Electronic energy + Delta-G solvation = -27003.803492 eV Core-core repulsion = 23213.374631 eV Total energy + Delta-G solvation = -3790.428861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32313 -40.69901 -39.62387 -37.15675 -36.63448 -34.56382 -33.19200 -31.86747 -31.05535 -29.95379 -28.74754 -27.12933 -25.82852 -24.77594 -24.09146 -22.68607 -22.00252 -20.73794 -20.12517 -19.78623 -18.63323 -18.11264 -17.54236 -17.17751 -16.83835 -16.79124 -16.18163 -15.94443 -15.63789 -15.48364 -15.30471 -15.07995 -14.99719 -14.51040 -14.15718 -14.07228 -13.91253 -13.71879 -13.64203 -13.53735 -13.23739 -12.94213 -12.59454 -12.55104 -12.33935 -12.15181 -12.04645 -12.00050 -11.92105 -11.72752 -11.51034 -11.30501 -11.12842 -11.03598 -10.66267 -10.27629 -9.94761 -9.04568 -8.88342 -8.13538 -5.43867 -0.64910 0.37424 0.81359 1.30050 1.31849 1.42748 1.51465 1.91111 2.06507 2.44053 2.49606 3.09519 3.39995 3.64704 3.76797 3.84068 3.94568 3.95502 4.10010 4.30223 4.38038 4.38610 4.41263 4.45867 4.54530 4.56768 4.58026 4.71438 4.75069 4.79819 4.82778 4.90630 4.96276 5.02355 5.05150 5.09322 5.15508 5.21231 5.27768 5.33300 5.43173 5.65937 5.91228 6.16424 6.24190 6.38050 6.96738 7.03457 7.67626 8.08058 9.06369 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.002321 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.297866 B =12061.405645 C =12489.082966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.328 6.328 3 C 0.086 3.914 4 C -0.329 4.329 5 S 0.286 5.714 6 C -0.265 4.265 7 C 0.590 3.410 8 O -0.567 6.567 9 N -0.706 5.706 10 C 0.157 3.843 11 H 0.081 0.919 12 C -0.161 4.161 13 C -0.078 4.078 14 C -0.122 4.122 15 C 0.142 3.858 16 N -0.619 5.619 17 C -0.242 4.242 18 H 0.053 0.947 19 C -0.038 4.038 20 N -0.958 5.958 21 Si 0.946 3.054 22 H -0.277 1.277 23 H -0.315 1.315 24 H -0.261 1.261 25 C 0.120 3.880 26 C -0.121 4.121 27 C -0.080 4.080 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.199 0.801 32 H 0.408 0.592 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.260 0.740 42 H 0.032 0.968 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.742 -22.338 0.994 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.243 6.243 3 C 0.029 3.971 4 C -0.467 4.467 5 S 0.553 5.447 6 C -0.386 4.386 7 C 0.377 3.623 8 O -0.448 6.448 9 N -0.358 5.358 10 C 0.053 3.947 11 H 0.099 0.901 12 C -0.219 4.219 13 C -0.097 4.097 14 C -0.161 4.161 15 C 0.017 3.983 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.071 0.929 19 C -0.233 4.233 20 N -0.605 5.605 21 Si 0.775 3.225 22 H -0.204 1.204 23 H -0.244 1.244 24 H -0.185 1.185 25 C -0.005 4.005 26 C -0.160 4.160 27 C -0.116 4.116 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.135 0.865 31 H 0.216 0.784 32 H 0.246 0.754 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.173 -21.396 1.002 30.118 hybrid contribution 0.384 -0.865 0.616 1.129 sum -20.790 -22.261 1.618 30.502 Atomic orbital electron populations 1.23346 0.76116 1.05633 1.02356 1.86104 1.23483 1.25079 1.89599 1.17527 0.91185 0.85664 1.02686 1.25462 1.07271 0.96880 1.17124 1.82746 0.90505 1.04852 1.66630 1.24335 0.97963 0.98487 1.17827 1.17095 0.86701 0.82730 0.75749 1.90816 1.48120 1.54009 1.51833 1.45928 1.09572 1.06012 1.74260 1.20926 0.81240 0.95206 0.97346 0.90137 1.22212 1.02181 1.01587 0.95939 1.21225 0.96148 0.92317 1.00020 1.22029 0.99761 0.94816 0.99504 1.21125 0.83688 0.95101 0.98360 1.44489 1.05482 1.17905 1.66551 1.18874 1.12091 0.97937 1.08282 0.92922 1.25900 0.98552 0.97412 1.01424 1.69968 1.20477 1.32350 1.37701 0.85928 0.78360 0.75458 0.82749 1.20382 1.24383 1.18494 1.21367 0.93595 0.90900 0.94630 1.21975 0.96337 0.96001 1.01736 1.20013 0.93751 0.96839 1.00971 0.91576 0.91578 0.86488 0.78380 0.75441 0.93262 0.91416 0.91092 0.90098 0.91921 0.89557 0.94611 0.92524 0.93139 0.95060 0.93572 0.90480 0.91763 0.83301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.93 113.37 1.13 1.27 16 2 O -0.33 -5.50 10.56 -96.07 -1.01 -6.51 16 3 C 0.09 1.50 6.61 21.20 0.14 1.64 16 4 C -0.33 -4.13 9.81 66.87 0.66 -3.47 16 5 S 0.29 3.64 22.15 -56.49 -1.25 2.38 16 6 C -0.27 -5.38 6.45 24.09 0.16 -5.23 16 7 C 0.59 14.66 7.75 86.41 0.67 15.33 16 8 O -0.57 -18.38 16.50 -4.36 -0.07 -18.45 16 9 N -0.71 -14.80 4.99 -446.64 -2.23 -17.03 16 10 C 0.16 3.71 2.40 44.99 0.11 3.82 16 11 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 12 C -0.16 -3.89 8.78 71.98 0.63 -3.26 16 13 C -0.08 -1.98 2.14 -10.77 -0.02 -2.01 16 14 C -0.12 -3.17 4.81 30.67 0.15 -3.02 16 15 C 0.14 4.89 6.52 86.36 0.56 5.45 16 16 N -0.62 -27.69 2.77 -699.11 -1.94 -29.62 16 17 C -0.24 -13.42 10.04 84.03 0.84 -12.57 16 18 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 19 C -0.04 -2.23 5.23 84.86 0.44 -1.79 16 20 N -0.96 -60.11 13.97 21.65 0.30 -59.81 16 21 Si 0.95 46.40 24.35 68.60 1.67 48.07 16 22 H -0.28 -12.91 6.62 99.48 0.66 -12.25 16 23 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 24 H -0.26 -12.14 6.63 99.48 0.66 -11.48 16 25 C 0.12 4.85 4.20 86.36 0.36 5.21 16 26 C -0.12 -3.77 4.96 30.67 0.15 -3.62 16 27 C -0.08 -1.68 10.00 21.80 0.22 -1.46 16 28 H 0.07 0.34 7.84 -2.39 -0.02 0.32 16 29 H 0.07 0.34 7.84 -2.39 -0.02 0.32 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.20 1.30 6.96 -2.91 -0.02 1.28 16 32 H 0.41 6.64 5.95 -92.70 -0.55 6.09 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.57 6.46 -2.39 -0.02 1.55 16 35 H 0.07 1.76 6.46 -2.38 -0.02 1.74 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.78 6.51 -2.39 -0.02 1.76 16 38 H 0.09 1.59 6.46 -2.38 -0.02 1.58 16 39 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.06 2.00 7.93 -2.39 -0.02 1.99 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.03 1.23 7.07 -2.39 -0.02 1.21 16 43 H 0.05 2.12 4.50 -2.39 -0.01 2.10 16 44 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 2.12 6.51 -2.38 -0.02 2.10 16 46 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -73.30 368.50 2.02 -71.27 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.36 Total: 13.39 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 6.19 Total: -3.69 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -3.86 Total: -106.46 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.09 Total: -24.96 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.25 Total: 2.38 kcal Total: -73.30 2.02 -71.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997706133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.119 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds