Wall clock time and date at job start Tue Mar 31 2020 20:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35782 * 117.00174 * 2 1 4 4 C 1.38020 * 123.47095 * 0.19738 * 3 2 1 5 5 C 1.33618 * 115.08767 * 180.27142 * 4 3 2 6 6 S 1.70581 * 111.14200 * 359.74752 * 5 4 3 7 7 C 1.37266 * 123.47209 * 179.97438 * 3 2 1 8 8 C 1.41725 * 125.47424 * 0.02562 * 7 3 2 9 9 O 1.21775 * 120.00038 * 359.72141 * 8 7 3 10 10 N 1.34777 * 120.00096 * 179.71499 * 8 7 3 11 11 C 1.46502 * 120.00158 * 179.72341 * 10 8 7 12 12 H 1.08998 * 109.47010 * 325.00899 * 11 10 8 13 13 C 1.52999 * 109.46543 * 85.00462 * 11 10 8 14 14 C 1.52992 * 109.46984 * 205.00068 * 11 10 8 15 15 C 1.53038 * 109.46529 * 300.02623 * 14 11 10 16 16 C 1.53190 * 109.31345 * 178.60096 * 15 14 11 17 17 N 1.46920 * 108.76520 * 54.66091 * 16 15 14 18 18 C 1.36938 * 120.63451 * 126.40249 * 17 16 15 19 19 H 1.07999 * 120.00100 * 332.61198 * 18 17 16 20 20 C 1.38810 * 120.00320 * 152.60650 * 18 17 16 21 21 N 1.31620 * 120.00428 * 159.34718 * 20 18 17 22 22 Si 1.86804 * 120.00027 * 339.34897 * 20 18 17 23 23 H 1.48497 * 109.47031 * 92.94025 * 22 20 18 24 24 H 1.48499 * 109.47462 * 212.94126 * 22 20 18 25 25 H 1.48496 * 109.46970 * 332.94028 * 22 20 18 26 26 C 1.46931 * 118.74149 * 306.38088 * 17 16 15 27 27 C 1.53043 * 109.45895 * 179.97438 * 14 11 10 28 28 H 1.09003 * 109.46232 * 60.00230 * 1 2 3 29 29 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47355 * 300.00679 * 1 2 3 31 31 H 1.08001 * 122.45816 * 0.02562 * 4 3 2 32 32 H 1.07995 * 124.43255 * 179.74845 * 5 4 3 33 33 H 0.97002 * 119.99688 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47561 * 60.00261 * 13 11 10 35 35 H 1.09001 * 109.46808 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.47238 * 299.99860 * 13 11 10 37 37 H 1.08998 * 109.46393 * 60.00929 * 14 11 10 38 38 H 1.08997 * 109.50358 * 298.57077 * 15 14 11 39 39 H 1.09007 * 109.49425 * 58.66937 * 15 14 11 40 40 H 1.09002 * 109.60246 * 294.86944 * 16 15 14 41 41 H 1.09004 * 109.70506 * 174.50944 * 16 15 14 42 42 H 0.96997 * 120.00594 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.58684 * 293.82693 * 26 17 16 44 44 H 1.08995 * 109.70787 * 173.46586 * 26 17 16 45 45 H 1.08996 * 109.50123 * 301.34427 * 27 14 11 46 46 H 1.09007 * 109.49411 * 61.43563 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 0.0040 5 6 2.1390 3.5001 -0.0024 6 16 3.7924 3.0804 -0.0070 7 6 3.4094 1.3645 0.0005 8 6 4.3567 0.3104 0.0006 9 8 3.9793 -0.8474 0.0053 10 7 5.6753 0.5893 -0.0047 11 6 6.6546 -0.5004 0.0015 12 1 6.2727 -1.3287 0.5982 13 6 6.8986 -0.9747 -1.4325 14 6 7.9692 -0.0011 0.6042 15 6 8.5049 1.1623 -0.2335 16 6 9.8027 1.6821 0.3927 17 7 10.7406 0.5604 0.5364 18 6 12.0059 0.6381 0.0184 19 1 12.2015 1.2676 -0.8370 20 6 13.0371 -0.0922 0.5930 21 7 14.1250 -0.3525 -0.1006 22 14 12.8808 -0.7055 2.3505 23 1 12.3248 -2.0824 2.3466 24 1 14.2198 -0.7142 2.9927 25 1 11.9738 0.1925 3.1093 26 6 10.2954 -0.6463 1.2467 27 6 8.9918 -1.1397 0.6111 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2867 2.4660 0.0078 32 1 1.7664 4.5137 -0.0044 33 1 5.9759 1.5115 -0.0082 34 1 7.2805 -0.1464 -2.0293 35 1 7.6268 -1.7858 -1.4279 36 1 5.9620 -1.3304 -1.8619 37 1 7.7952 0.3368 1.6257 38 1 8.7028 0.8188 -1.2488 39 1 7.7663 1.9636 -0.2575 40 1 9.5904 2.1088 1.3731 41 1 10.2413 2.4451 -0.2505 42 1 14.8455 -0.8632 0.3007 43 1 10.1232 -0.4096 2.2966 44 1 11.0572 -1.4217 1.1671 45 1 8.5999 -1.9772 1.1882 46 1 9.1850 -1.4614 -0.4124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997838492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:44 Heat of formation + Delta-G solvation = -13.659714 kcal Electronic energy + Delta-G solvation = -27439.642652 eV Core-core repulsion = 23650.319319 eV Total energy + Delta-G solvation = -3789.323333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57667 -39.57245 -38.10706 -36.30680 -35.36613 -32.89279 -31.56584 -30.50184 -30.24478 -28.99837 -27.31646 -25.56162 -25.03793 -23.34248 -22.87175 -21.51742 -20.61509 -19.95675 -19.04876 -18.66964 -17.22888 -16.69192 -16.31131 -16.23341 -15.74524 -15.33253 -14.89462 -14.86195 -14.44095 -14.22629 -14.03628 -13.77549 -13.49190 -13.39882 -13.11125 -13.00465 -12.85858 -12.46708 -12.15947 -11.94905 -11.81836 -11.70628 -11.61745 -11.47629 -11.35991 -10.98995 -10.65523 -10.54989 -10.39053 -10.08342 -9.94079 -9.73371 -9.56254 -9.39123 -9.24118 -8.91684 -8.58034 -8.41966 -6.93825 -5.92120 -3.27335 0.17309 1.09184 1.41774 2.00661 3.12920 3.27644 3.27965 3.35060 3.51020 3.54073 4.25638 4.55964 4.64815 4.71521 4.78463 4.91927 4.98222 5.05911 5.10731 5.12282 5.22756 5.26424 5.38507 5.44994 5.60402 5.63863 5.71763 5.82098 5.91642 5.98737 6.09227 6.17064 6.20018 6.29760 6.41287 6.52461 6.54114 6.60697 6.68105 6.72351 6.75632 6.90970 7.04020 7.56409 7.99783 8.29524 8.35765 8.97730 9.75568 10.14034 11.23958 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.002563 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.113250 B =10920.392387 C =11471.198262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.271 6.271 3 C 0.186 3.814 4 C -0.214 4.214 5 C -0.198 4.198 6 S 0.231 5.769 7 C -0.323 4.323 8 C 0.593 3.407 9 O -0.525 6.525 10 N -0.724 5.724 11 C 0.149 3.851 12 H 0.085 0.915 13 C -0.163 4.163 14 C -0.087 4.087 15 C -0.131 4.131 16 C 0.149 3.851 17 N -0.605 5.605 18 C -0.258 4.258 19 H 0.085 0.915 20 C 0.022 3.978 21 N -0.909 5.909 22 Si 0.883 3.117 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.126 3.874 27 C -0.127 4.127 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.062 0.938 42 H 0.262 0.738 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.641 7.455 0.008 29.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.182 6.182 3 C 0.125 3.875 4 C -0.248 4.248 5 C -0.336 4.336 6 S 0.496 5.504 7 C -0.444 4.444 8 C 0.381 3.619 9 O -0.404 6.404 10 N -0.377 5.377 11 C 0.045 3.955 12 H 0.103 0.897 13 C -0.221 4.221 14 C -0.106 4.106 15 C -0.170 4.170 16 C 0.023 3.977 17 N -0.329 5.329 18 C -0.386 4.386 19 H 0.102 0.898 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.714 3.286 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.196 1.196 26 C 0.001 3.999 27 C -0.167 4.167 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.074 0.926 31 H 0.167 0.833 32 H 0.192 0.808 33 H 0.229 0.771 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.038 0.962 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.288 7.186 -0.010 28.218 hybrid contribution -1.605 -0.445 1.020 1.953 sum -28.893 6.740 1.010 29.686 Atomic orbital electron populations 1.23191 0.78387 1.04479 1.01243 1.86349 1.20823 1.24058 1.86955 1.18292 0.90273 0.85473 0.93433 1.20058 1.02119 0.90950 1.11686 1.25061 0.99237 1.03796 1.05544 1.83154 1.03367 0.95573 1.68322 1.22832 0.95459 0.98388 1.27674 1.15543 0.81735 0.87683 0.76988 1.90865 1.79574 1.20065 1.49908 1.46108 1.05372 1.10217 1.75980 1.21051 0.87782 0.89273 0.97367 0.89664 1.22239 1.01746 1.01935 0.96222 1.21325 0.92841 0.97156 0.99310 1.22128 0.98047 0.96458 1.00413 1.20900 0.89073 0.90359 0.97351 1.44340 1.11535 1.11033 1.66012 1.18916 0.82857 1.27526 1.09309 0.89765 1.25278 0.95353 0.99118 0.97907 1.69837 1.08222 1.41147 1.36053 0.86948 0.75787 0.78322 0.87590 1.21622 1.23278 1.19628 1.21324 0.94520 0.90135 0.93969 1.22081 0.96092 0.96215 1.02280 0.92581 0.87817 0.92575 0.83252 0.80809 0.77111 0.92032 0.91041 0.92769 0.91267 0.91117 0.93423 0.96178 0.91918 0.92820 0.95883 0.90920 0.92635 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.94 101.05 1.00 1.15 16 2 O -0.27 -3.29 9.36 -36.58 -0.34 -3.64 16 3 C 0.19 2.10 6.70 -40.01 -0.27 1.84 16 4 C -0.21 -1.66 9.17 -41.28 -0.38 -2.04 16 5 C -0.20 -1.30 10.90 29.11 0.32 -0.98 16 6 S 0.23 1.86 22.00 -107.50 -2.37 -0.50 16 7 C -0.32 -3.94 6.28 -38.60 -0.24 -4.19 16 8 C 0.59 8.81 7.56 -14.93 -0.11 8.70 16 9 O -0.53 -9.68 15.50 -12.40 -0.19 -9.87 16 10 N -0.72 -9.56 4.99 -56.67 -0.28 -9.85 16 11 C 0.15 2.13 2.40 -67.93 -0.16 1.97 16 12 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 13 C -0.16 -2.30 8.78 37.16 0.33 -1.98 16 14 C -0.09 -1.33 2.14 -90.58 -0.19 -1.52 16 15 C -0.13 -2.01 4.81 -26.61 -0.13 -2.14 16 16 C 0.15 2.83 6.52 -3.72 -0.02 2.80 16 17 N -0.61 -14.18 2.77 -172.32 -0.48 -14.65 16 18 C -0.26 -7.16 10.04 -15.06 -0.15 -7.31 16 19 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 20 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 21 N -0.91 -27.96 13.97 55.49 0.78 -27.18 16 22 Si 0.88 22.54 24.35 -169.99 -4.14 18.40 16 23 H -0.29 -7.12 6.62 56.52 0.37 -6.75 16 24 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.27 -6.81 6.63 56.52 0.37 -6.43 16 26 C 0.13 2.74 4.20 -3.71 -0.02 2.72 16 27 C -0.13 -2.22 4.96 -26.61 -0.13 -2.35 16 28 H 0.06 0.28 7.89 -51.93 -0.41 -0.13 16 29 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.28 7.87 -51.93 -0.41 -0.13 16 31 H 0.15 0.76 6.99 -52.49 -0.37 0.39 16 32 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.39 4.45 5.82 -40.82 -0.24 4.21 16 34 H 0.06 0.84 6.46 -51.93 -0.34 0.51 16 35 H 0.07 1.01 6.46 -51.93 -0.34 0.67 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.15 6.51 -51.93 -0.34 0.81 16 39 H 0.05 0.59 6.46 -51.93 -0.34 0.26 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 44 H 0.07 1.74 4.50 -51.93 -0.23 1.51 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 1.29 6.51 -51.93 -0.34 0.96 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -34.82 366.13 -8.42 -43.24 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.66 Total: 1.31 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.25 Total: -2.78 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.02 Total: -51.68 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.53 Total: -13.50 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.40 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.37 Total: -0.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.82 -8.42 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997838492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.578 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds