Wall clock time and date at job start Tue Mar 31 2020 20:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35782 * 117.00174 * 2 1 4 4 C 1.38020 * 123.47095 * 0.19738 * 3 2 1 5 5 C 1.33618 * 115.08767 * 180.27142 * 4 3 2 6 6 S 1.70581 * 111.14200 * 359.74752 * 5 4 3 7 7 C 1.37266 * 123.47209 * 179.97438 * 3 2 1 8 8 C 1.41725 * 125.47424 * 0.02562 * 7 3 2 9 9 O 1.21775 * 120.00038 * 359.72141 * 8 7 3 10 10 N 1.34777 * 120.00096 * 179.71499 * 8 7 3 11 11 C 1.46502 * 120.00158 * 179.72341 * 10 8 7 12 12 H 1.08998 * 109.47010 * 325.00899 * 11 10 8 13 13 C 1.52999 * 109.46543 * 85.00462 * 11 10 8 14 14 C 1.52992 * 109.46984 * 205.00068 * 11 10 8 15 15 C 1.53038 * 109.46529 * 300.02623 * 14 11 10 16 16 C 1.53190 * 109.31345 * 178.60096 * 15 14 11 17 17 N 1.46920 * 108.76520 * 54.66091 * 16 15 14 18 18 C 1.36938 * 120.63451 * 126.40249 * 17 16 15 19 19 H 1.07999 * 120.00100 * 332.61198 * 18 17 16 20 20 C 1.38810 * 120.00320 * 152.60650 * 18 17 16 21 21 N 1.31620 * 120.00428 * 159.34718 * 20 18 17 22 22 Si 1.86804 * 120.00027 * 339.34897 * 20 18 17 23 23 H 1.48497 * 109.47031 * 92.94025 * 22 20 18 24 24 H 1.48499 * 109.47462 * 212.94126 * 22 20 18 25 25 H 1.48496 * 109.46970 * 332.94028 * 22 20 18 26 26 C 1.46931 * 118.74149 * 306.38088 * 17 16 15 27 27 C 1.53043 * 109.45895 * 179.97438 * 14 11 10 28 28 H 1.09003 * 109.46232 * 60.00230 * 1 2 3 29 29 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47355 * 300.00679 * 1 2 3 31 31 H 1.08001 * 122.45816 * 0.02562 * 4 3 2 32 32 H 1.07995 * 124.43255 * 179.74845 * 5 4 3 33 33 H 0.97002 * 119.99688 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47561 * 60.00261 * 13 11 10 35 35 H 1.09001 * 109.46808 * 180.02562 * 13 11 10 36 36 H 1.09002 * 109.47238 * 299.99860 * 13 11 10 37 37 H 1.08998 * 109.46393 * 60.00929 * 14 11 10 38 38 H 1.08997 * 109.50358 * 298.57077 * 15 14 11 39 39 H 1.09007 * 109.49425 * 58.66937 * 15 14 11 40 40 H 1.09002 * 109.60246 * 294.86944 * 16 15 14 41 41 H 1.09004 * 109.70506 * 174.50944 * 16 15 14 42 42 H 0.96997 * 120.00594 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.58684 * 293.82693 * 26 17 16 44 44 H 1.08995 * 109.70787 * 173.46586 * 26 17 16 45 45 H 1.08996 * 109.50123 * 301.34427 * 27 14 11 46 46 H 1.09007 * 109.49411 * 61.43563 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3653 2.4107 0.0040 5 6 2.1390 3.5001 -0.0024 6 16 3.7924 3.0804 -0.0070 7 6 3.4094 1.3645 0.0005 8 6 4.3567 0.3104 0.0006 9 8 3.9793 -0.8474 0.0053 10 7 5.6753 0.5893 -0.0047 11 6 6.6546 -0.5004 0.0015 12 1 6.2727 -1.3287 0.5982 13 6 6.8986 -0.9747 -1.4325 14 6 7.9692 -0.0011 0.6042 15 6 8.5049 1.1623 -0.2335 16 6 9.8027 1.6821 0.3927 17 7 10.7406 0.5604 0.5364 18 6 12.0059 0.6381 0.0184 19 1 12.2015 1.2676 -0.8370 20 6 13.0371 -0.0922 0.5930 21 7 14.1250 -0.3525 -0.1006 22 14 12.8808 -0.7055 2.3505 23 1 12.3248 -2.0824 2.3466 24 1 14.2198 -0.7142 2.9927 25 1 11.9738 0.1925 3.1093 26 6 10.2954 -0.6463 1.2467 27 6 8.9918 -1.1397 0.6111 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2867 2.4660 0.0078 32 1 1.7664 4.5137 -0.0044 33 1 5.9759 1.5115 -0.0082 34 1 7.2805 -0.1464 -2.0293 35 1 7.6268 -1.7858 -1.4279 36 1 5.9620 -1.3304 -1.8619 37 1 7.7952 0.3368 1.6257 38 1 8.7028 0.8188 -1.2488 39 1 7.7663 1.9636 -0.2575 40 1 9.5904 2.1088 1.3731 41 1 10.2413 2.4451 -0.2505 42 1 14.8455 -0.8632 0.3007 43 1 10.1232 -0.4096 2.2966 44 1 11.0572 -1.4217 1.1671 45 1 8.5999 -1.9772 1.1882 46 1 9.1850 -1.4614 -0.4124 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997838492.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:43 Heat of formation + Delta-G solvation = -37.268748 kcal Electronic energy + Delta-G solvation = -27440.666417 eV Core-core repulsion = 23650.319319 eV Total energy + Delta-G solvation = -3790.347098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46586 -40.58854 -39.45180 -37.04864 -36.76910 -34.51220 -33.21086 -31.88622 -31.41922 -30.18883 -27.94284 -27.09706 -25.89681 -24.85966 -24.25574 -22.79321 -21.96074 -20.69688 -20.21400 -19.77804 -18.63178 -18.00911 -17.29430 -17.17414 -16.93231 -16.44262 -16.05773 -15.93095 -15.83121 -15.47980 -15.11584 -15.07330 -14.81755 -14.61848 -14.48160 -14.07267 -13.90660 -13.67485 -13.53306 -13.41674 -13.22773 -12.94018 -12.57525 -12.50154 -12.33824 -12.15698 -12.03190 -12.00880 -11.93920 -11.71122 -11.50684 -11.23857 -11.04481 -10.97507 -10.66196 -10.18855 -9.77000 -9.07381 -8.89190 -8.14092 -5.44517 -0.51060 0.44717 0.82973 1.31530 1.34039 1.42048 1.51075 2.24223 2.27831 2.43678 2.51471 3.08664 3.39279 3.69438 3.74230 3.83916 3.95055 4.08291 4.23278 4.30201 4.31224 4.37431 4.37596 4.48021 4.55191 4.56831 4.62315 4.70650 4.72127 4.78822 4.87228 4.90366 4.96339 5.03409 5.08283 5.12112 5.16714 5.20038 5.27206 5.32079 5.53021 5.65207 5.90565 6.15903 6.26620 6.55619 6.95827 7.25623 7.66709 8.07604 9.05901 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.002563 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.113250 B =10920.392387 C =11471.198262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.309 6.309 3 C 0.181 3.819 4 C -0.225 4.225 5 C -0.174 4.174 6 S 0.260 5.740 7 C -0.377 4.377 8 C 0.591 3.409 9 O -0.575 6.575 10 N -0.716 5.716 11 C 0.159 3.841 12 H 0.073 0.927 13 C -0.158 4.158 14 C -0.077 4.077 15 C -0.121 4.121 16 C 0.143 3.857 17 N -0.620 5.620 18 C -0.243 4.243 19 H 0.053 0.947 20 C -0.037 4.037 21 N -0.958 5.958 22 Si 0.945 3.055 23 H -0.277 1.277 24 H -0.313 1.313 25 H -0.261 1.261 26 C 0.121 3.879 27 C -0.121 4.121 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.178 0.822 32 H 0.213 0.787 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.057 0.943 42 H 0.260 0.740 43 H 0.032 0.968 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.918 9.522 1.034 33.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.221 6.221 3 C 0.120 3.880 4 C -0.258 4.258 5 C -0.312 4.312 6 S 0.525 5.475 7 C -0.497 4.497 8 C 0.381 3.619 9 O -0.457 6.457 10 N -0.369 5.369 11 C 0.054 3.946 12 H 0.091 0.909 13 C -0.216 4.216 14 C -0.096 4.096 15 C -0.160 4.160 16 C 0.018 3.982 17 N -0.344 5.344 18 C -0.372 4.372 19 H 0.071 0.929 20 C -0.232 4.232 21 N -0.605 5.605 22 Si 0.775 3.225 23 H -0.204 1.204 24 H -0.243 1.243 25 H -0.185 1.185 26 C -0.004 4.004 27 C -0.160 4.160 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.195 0.805 32 H 0.230 0.770 33 H 0.241 0.759 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.617 9.290 1.026 32.011 hybrid contribution -0.718 -0.978 0.627 1.365 sum -31.334 8.312 1.653 32.460 Atomic orbital electron populations 1.23475 0.76009 1.05594 1.02956 1.86291 1.23547 1.25430 1.86838 1.18766 0.90461 0.86363 0.92454 1.20249 1.03575 0.89709 1.12244 1.25580 0.98180 1.05251 1.02170 1.82955 1.04440 0.92226 1.67899 1.22837 0.95558 1.00180 1.31085 1.15924 0.82260 0.87800 0.75887 1.90823 1.80307 1.22179 1.52407 1.45953 1.04884 1.10371 1.75663 1.20809 0.87414 0.89339 0.97001 0.90924 1.22180 1.01161 1.02025 0.96230 1.21208 0.92388 0.96154 0.99858 1.22011 0.97037 0.97524 0.99396 1.21116 0.89542 0.89148 0.98354 1.44492 1.10722 1.13156 1.66065 1.18880 0.84877 1.25549 1.07939 0.92876 1.25888 0.95330 1.00544 1.01417 1.69966 1.09457 1.43432 1.37654 0.85932 0.75279 0.78550 0.82779 1.20415 1.24260 1.18510 1.21365 0.95661 0.88869 0.94537 1.21972 0.94705 0.97661 1.01685 0.90803 0.87201 0.90787 0.80522 0.76985 0.75885 0.91530 0.91248 0.93709 0.90382 0.92030 0.89732 0.94621 0.92418 0.93095 0.95062 0.93475 0.90668 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.94 113.37 1.13 1.29 16 2 O -0.31 -7.41 9.36 -74.36 -0.70 -8.10 16 3 C 0.18 3.86 6.70 21.99 0.15 4.00 16 4 C -0.23 -2.75 9.17 21.17 0.19 -2.55 16 5 C -0.17 -1.53 10.90 66.77 0.73 -0.80 16 6 S 0.26 3.41 22.00 -56.49 -1.24 2.17 16 7 C -0.38 -8.75 6.28 22.90 0.14 -8.61 16 8 C 0.59 17.37 7.56 85.10 0.64 18.02 16 9 O -0.57 -21.68 15.50 12.16 0.19 -21.49 16 10 N -0.72 -17.89 4.99 -451.39 -2.25 -20.14 16 11 C 0.16 4.34 2.40 44.99 0.11 4.45 16 12 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 13 C -0.16 -4.35 8.78 71.98 0.63 -3.72 16 14 C -0.08 -2.17 2.14 -10.77 -0.02 -2.19 16 15 C -0.12 -3.41 4.81 30.67 0.15 -3.26 16 16 C 0.14 5.16 6.52 86.36 0.56 5.72 16 17 N -0.62 -28.57 2.77 -699.10 -1.94 -30.51 16 18 C -0.24 -13.71 10.04 84.03 0.84 -12.86 16 19 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 20 C -0.04 -2.20 5.23 84.86 0.44 -1.76 16 21 N -0.96 -60.79 13.97 21.65 0.30 -60.49 16 22 Si 0.95 47.14 24.35 68.60 1.67 48.81 16 23 H -0.28 -13.17 6.62 99.48 0.66 -12.52 16 24 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 25 H -0.26 -12.38 6.63 99.48 0.66 -11.72 16 26 C 0.12 5.07 4.20 86.36 0.36 5.43 16 27 C -0.12 -4.03 4.96 30.67 0.15 -3.88 16 28 H 0.07 0.58 7.89 -2.39 -0.02 0.56 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 0.58 7.87 -2.39 -0.02 0.56 16 31 H 0.18 1.06 6.99 -2.91 -0.02 1.04 16 32 H 0.21 0.19 8.06 -2.91 -0.02 0.17 16 33 H 0.40 8.13 5.82 -92.71 -0.54 7.59 16 34 H 0.07 1.75 6.46 -2.39 -0.02 1.73 16 35 H 0.07 1.92 6.46 -2.39 -0.02 1.91 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.89 6.51 -2.39 -0.02 1.87 16 39 H 0.08 1.79 6.46 -2.38 -0.02 1.77 16 40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 42 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.03 1.28 7.08 -2.39 -0.02 1.26 16 44 H 0.05 2.22 4.50 -2.39 -0.01 2.21 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.06 2.24 6.51 -2.38 -0.02 2.22 16 Total: -1.00 -79.33 366.13 2.62 -76.71 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.37 Total: 13.76 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 6.21 Total: -0.72 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -3.88 Total: -111.13 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.51 Total: -29.60 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.81 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.24 Total: 2.17 kcal Total: -79.33 2.62 -76.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997838492.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.437 kcal (2) G-P(sol) polarization free energy of solvation -79.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds