Wall clock time and date at job start Tue Mar 31 2020 20:18:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.35782 * 117.00174 * 2 1
4 4 C 1.38020 * 123.47095 * 0.19738 * 3 2 1
5 5 C 1.33618 * 115.08767 * 180.27142 * 4 3 2
6 6 S 1.70581 * 111.14200 * 359.74752 * 5 4 3
7 7 C 1.37266 * 123.47209 * 179.97438 * 3 2 1
8 8 C 1.41725 * 125.47424 * 0.02562 * 7 3 2
9 9 O 1.21775 * 120.00038 * 359.72141 * 8 7 3
10 10 N 1.34777 * 120.00096 * 179.71499 * 8 7 3
11 11 C 1.46502 * 120.00158 * 179.72341 * 10 8 7
12 12 H 1.08998 * 109.47010 * 325.00899 * 11 10 8
13 13 C 1.52999 * 109.46543 * 85.00462 * 11 10 8
14 14 C 1.52992 * 109.46984 * 205.00068 * 11 10 8
15 15 C 1.53038 * 109.46529 * 300.02623 * 14 11 10
16 16 C 1.53190 * 109.31345 * 178.60096 * 15 14 11
17 17 N 1.46920 * 108.76520 * 54.66091 * 16 15 14
18 18 C 1.36938 * 120.63451 * 126.40249 * 17 16 15
19 19 H 1.07999 * 120.00100 * 332.61198 * 18 17 16
20 20 C 1.38810 * 120.00320 * 152.60650 * 18 17 16
21 21 N 1.31620 * 120.00428 * 159.34718 * 20 18 17
22 22 Si 1.86804 * 120.00027 * 339.34897 * 20 18 17
23 23 H 1.48497 * 109.47031 * 92.94025 * 22 20 18
24 24 H 1.48499 * 109.47462 * 212.94126 * 22 20 18
25 25 H 1.48496 * 109.46970 * 332.94028 * 22 20 18
26 26 C 1.46931 * 118.74149 * 306.38088 * 17 16 15
27 27 C 1.53043 * 109.45895 * 179.97438 * 14 11 10
28 28 H 1.09003 * 109.46232 * 60.00230 * 1 2 3
29 29 H 1.08999 * 109.47189 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47355 * 300.00679 * 1 2 3
31 31 H 1.08001 * 122.45816 * 0.02562 * 4 3 2
32 32 H 1.07995 * 124.43255 * 179.74845 * 5 4 3
33 33 H 0.97002 * 119.99688 * 0.02562 * 10 8 7
34 34 H 1.09000 * 109.47561 * 60.00261 * 13 11 10
35 35 H 1.09001 * 109.46808 * 180.02562 * 13 11 10
36 36 H 1.09002 * 109.47238 * 299.99860 * 13 11 10
37 37 H 1.08998 * 109.46393 * 60.00929 * 14 11 10
38 38 H 1.08997 * 109.50358 * 298.57077 * 15 14 11
39 39 H 1.09007 * 109.49425 * 58.66937 * 15 14 11
40 40 H 1.09002 * 109.60246 * 294.86944 * 16 15 14
41 41 H 1.09004 * 109.70506 * 174.50944 * 16 15 14
42 42 H 0.96997 * 120.00594 * 180.02562 * 21 20 18
43 43 H 1.08997 * 109.58684 * 293.82693 * 26 17 16
44 44 H 1.08995 * 109.70787 * 173.46586 * 26 17 16
45 45 H 1.08996 * 109.50123 * 301.34427 * 27 14 11
46 46 H 1.09007 * 109.49411 * 61.43563 * 27 14 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0455 1.2098 0.0000
4 6 1.3653 2.4107 0.0040
5 6 2.1390 3.5001 -0.0024
6 16 3.7924 3.0804 -0.0070
7 6 3.4094 1.3645 0.0005
8 6 4.3567 0.3104 0.0006
9 8 3.9793 -0.8474 0.0053
10 7 5.6753 0.5893 -0.0047
11 6 6.6546 -0.5004 0.0015
12 1 6.2727 -1.3287 0.5982
13 6 6.8986 -0.9747 -1.4325
14 6 7.9692 -0.0011 0.6042
15 6 8.5049 1.1623 -0.2335
16 6 9.8027 1.6821 0.3927
17 7 10.7406 0.5604 0.5364
18 6 12.0059 0.6381 0.0184
19 1 12.2015 1.2676 -0.8370
20 6 13.0371 -0.0922 0.5930
21 7 14.1250 -0.3525 -0.1006
22 14 12.8808 -0.7055 2.3505
23 1 12.3248 -2.0824 2.3466
24 1 14.2198 -0.7142 2.9927
25 1 11.9738 0.1925 3.1093
26 6 10.2954 -0.6463 1.2467
27 6 8.9918 -1.1397 0.6111
28 1 -0.3632 0.5138 -0.8901
29 1 -0.3633 -1.0276 -0.0005
30 1 -0.3634 0.5139 0.8899
31 1 0.2867 2.4660 0.0078
32 1 1.7664 4.5137 -0.0044
33 1 5.9759 1.5115 -0.0082
34 1 7.2805 -0.1464 -2.0293
35 1 7.6268 -1.7858 -1.4279
36 1 5.9620 -1.3304 -1.8619
37 1 7.7952 0.3368 1.6257
38 1 8.7028 0.8188 -1.2488
39 1 7.7663 1.9636 -0.2575
40 1 9.5904 2.1088 1.3731
41 1 10.2413 2.4451 -0.2505
42 1 14.8455 -0.8632 0.3007
43 1 10.1232 -0.4096 2.2966
44 1 11.0572 -1.4217 1.1671
45 1 8.5999 -1.9772 1.1882
46 1 9.1850 -1.4614 -0.4124
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000997838492.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:18:43
Heat of formation + Delta-G solvation = -37.268748 kcal
Electronic energy + Delta-G solvation = -27440.666417 eV
Core-core repulsion = 23650.319319 eV
Total energy + Delta-G solvation = -3790.347098 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 338.145 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.46586 -40.58854 -39.45180 -37.04864 -36.76910 -34.51220 -33.21086 -31.88622
-31.41922 -30.18883 -27.94284 -27.09706 -25.89681 -24.85966 -24.25574 -22.79321
-21.96074 -20.69688 -20.21400 -19.77804 -18.63178 -18.00911 -17.29430 -17.17414
-16.93231 -16.44262 -16.05773 -15.93095 -15.83121 -15.47980 -15.11584 -15.07330
-14.81755 -14.61848 -14.48160 -14.07267 -13.90660 -13.67485 -13.53306 -13.41674
-13.22773 -12.94018 -12.57525 -12.50154 -12.33824 -12.15698 -12.03190 -12.00880
-11.93920 -11.71122 -11.50684 -11.23857 -11.04481 -10.97507 -10.66196 -10.18855
-9.77000 -9.07381 -8.89190 -8.14092 -5.44517 -0.51060 0.44717 0.82973
1.31530 1.34039 1.42048 1.51075 2.24223 2.27831 2.43678 2.51471
3.08664 3.39279 3.69438 3.74230 3.83916 3.95055 4.08291 4.23278
4.30201 4.31224 4.37431 4.37596 4.48021 4.55191 4.56831 4.62315
4.70650 4.72127 4.78822 4.87228 4.90366 4.96339 5.03409 5.08283
5.12112 5.16714 5.20038 5.27206 5.32079 5.53021 5.65207 5.90565
6.15903 6.26620 6.55619 6.95827 7.25623 7.66709 8.07604 9.05901
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.024510 B = 0.002563 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1142.113250 B =10920.392387 C =11471.198262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 O -0.309 6.309
3 C 0.181 3.819
4 C -0.225 4.225
5 C -0.174 4.174
6 S 0.260 5.740
7 C -0.377 4.377
8 C 0.591 3.409
9 O -0.575 6.575
10 N -0.716 5.716
11 C 0.159 3.841
12 H 0.073 0.927
13 C -0.158 4.158
14 C -0.077 4.077
15 C -0.121 4.121
16 C 0.143 3.857
17 N -0.620 5.620
18 C -0.243 4.243
19 H 0.053 0.947
20 C -0.037 4.037
21 N -0.958 5.958
22 Si 0.945 3.055
23 H -0.277 1.277
24 H -0.313 1.313
25 H -0.261 1.261
26 C 0.121 3.879
27 C -0.121 4.121
28 H 0.073 0.927
29 H 0.110 0.890
30 H 0.074 0.926
31 H 0.178 0.822
32 H 0.213 0.787
33 H 0.404 0.596
34 H 0.066 0.934
35 H 0.069 0.931
36 H 0.044 0.956
37 H 0.078 0.922
38 H 0.061 0.939
39 H 0.084 0.916
40 H 0.036 0.964
41 H 0.057 0.943
42 H 0.260 0.740
43 H 0.032 0.968
44 H 0.047 0.953
45 H 0.075 0.925
46 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.918 9.522 1.034 33.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 O -0.221 6.221
3 C 0.120 3.880
4 C -0.258 4.258
5 C -0.312 4.312
6 S 0.525 5.475
7 C -0.497 4.497
8 C 0.381 3.619
9 O -0.457 6.457
10 N -0.369 5.369
11 C 0.054 3.946
12 H 0.091 0.909
13 C -0.216 4.216
14 C -0.096 4.096
15 C -0.160 4.160
16 C 0.018 3.982
17 N -0.344 5.344
18 C -0.372 4.372
19 H 0.071 0.929
20 C -0.232 4.232
21 N -0.605 5.605
22 Si 0.775 3.225
23 H -0.204 1.204
24 H -0.243 1.243
25 H -0.185 1.185
26 C -0.004 4.004
27 C -0.160 4.160
28 H 0.092 0.908
29 H 0.128 0.872
30 H 0.092 0.908
31 H 0.195 0.805
32 H 0.230 0.770
33 H 0.241 0.759
34 H 0.085 0.915
35 H 0.088 0.912
36 H 0.063 0.937
37 H 0.096 0.904
38 H 0.080 0.920
39 H 0.103 0.897
40 H 0.054 0.946
41 H 0.076 0.924
42 H 0.069 0.931
43 H 0.049 0.951
44 H 0.065 0.935
45 H 0.093 0.907
46 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -30.617 9.290 1.026 32.011
hybrid contribution -0.718 -0.978 0.627 1.365
sum -31.334 8.312 1.653 32.460
Atomic orbital electron populations
1.23475 0.76009 1.05594 1.02956 1.86291 1.23547 1.25430 1.86838
1.18766 0.90461 0.86363 0.92454 1.20249 1.03575 0.89709 1.12244
1.25580 0.98180 1.05251 1.02170 1.82955 1.04440 0.92226 1.67899
1.22837 0.95558 1.00180 1.31085 1.15924 0.82260 0.87800 0.75887
1.90823 1.80307 1.22179 1.52407 1.45953 1.04884 1.10371 1.75663
1.20809 0.87414 0.89339 0.97001 0.90924 1.22180 1.01161 1.02025
0.96230 1.21208 0.92388 0.96154 0.99858 1.22011 0.97037 0.97524
0.99396 1.21116 0.89542 0.89148 0.98354 1.44492 1.10722 1.13156
1.66065 1.18880 0.84877 1.25549 1.07939 0.92876 1.25888 0.95330
1.00544 1.01417 1.69966 1.09457 1.43432 1.37654 0.85932 0.75279
0.78550 0.82779 1.20415 1.24260 1.18510 1.21365 0.95661 0.88869
0.94537 1.21972 0.94705 0.97661 1.01685 0.90803 0.87201 0.90787
0.80522 0.76985 0.75885 0.91530 0.91248 0.93709 0.90382 0.92030
0.89732 0.94621 0.92418 0.93095 0.95062 0.93475 0.90668 0.91825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.17 9.94 113.37 1.13 1.29 16
2 O -0.31 -7.41 9.36 -74.36 -0.70 -8.10 16
3 C 0.18 3.86 6.70 21.99 0.15 4.00 16
4 C -0.23 -2.75 9.17 21.17 0.19 -2.55 16
5 C -0.17 -1.53 10.90 66.77 0.73 -0.80 16
6 S 0.26 3.41 22.00 -56.49 -1.24 2.17 16
7 C -0.38 -8.75 6.28 22.90 0.14 -8.61 16
8 C 0.59 17.37 7.56 85.10 0.64 18.02 16
9 O -0.57 -21.68 15.50 12.16 0.19 -21.49 16
10 N -0.72 -17.89 4.99 -451.39 -2.25 -20.14 16
11 C 0.16 4.34 2.40 44.99 0.11 4.45 16
12 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16
13 C -0.16 -4.35 8.78 71.98 0.63 -3.72 16
14 C -0.08 -2.17 2.14 -10.77 -0.02 -2.19 16
15 C -0.12 -3.41 4.81 30.67 0.15 -3.26 16
16 C 0.14 5.16 6.52 86.36 0.56 5.72 16
17 N -0.62 -28.57 2.77 -699.10 -1.94 -30.51 16
18 C -0.24 -13.71 10.04 84.03 0.84 -12.86 16
19 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16
20 C -0.04 -2.20 5.23 84.86 0.44 -1.76 16
21 N -0.96 -60.79 13.97 21.65 0.30 -60.49 16
22 Si 0.95 47.14 24.35 68.60 1.67 48.81 16
23 H -0.28 -13.17 6.62 99.48 0.66 -12.52 16
24 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16
25 H -0.26 -12.38 6.63 99.48 0.66 -11.72 16
26 C 0.12 5.07 4.20 86.36 0.36 5.43 16
27 C -0.12 -4.03 4.96 30.67 0.15 -3.88 16
28 H 0.07 0.58 7.89 -2.39 -0.02 0.56 16
29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16
30 H 0.07 0.58 7.87 -2.39 -0.02 0.56 16
31 H 0.18 1.06 6.99 -2.91 -0.02 1.04 16
32 H 0.21 0.19 8.06 -2.91 -0.02 0.17 16
33 H 0.40 8.13 5.82 -92.71 -0.54 7.59 16
34 H 0.07 1.75 6.46 -2.39 -0.02 1.73 16
35 H 0.07 1.92 6.46 -2.39 -0.02 1.91 16
36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16
37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16
38 H 0.06 1.89 6.51 -2.39 -0.02 1.87 16
39 H 0.08 1.79 6.46 -2.38 -0.02 1.77 16
40 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16
42 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16
43 H 0.03 1.28 7.08 -2.39 -0.02 1.26 16
44 H 0.05 2.22 4.50 -2.39 -0.01 2.21 16
45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
46 H 0.06 2.24 6.51 -2.38 -0.02 2.22 16
Total: -1.00 -79.33 366.13 2.62 -76.71
By element:
Atomic # 1 Polarization: 13.39 SS G_CDS: 0.37 Total: 13.76 kcal
Atomic # 6 Polarization: -6.93 SS G_CDS: 6.21 Total: -0.72 kcal
Atomic # 7 Polarization: -107.25 SS G_CDS: -3.88 Total: -111.13 kcal
Atomic # 8 Polarization: -29.09 SS G_CDS: -0.51 Total: -29.60 kcal
Atomic # 14 Polarization: 47.14 SS G_CDS: 1.67 Total: 48.81 kcal
Atomic # 16 Polarization: 3.41 SS G_CDS: -1.24 Total: 2.17 kcal
Total: -79.33 2.62 -76.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000997838492.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.437 kcal
(2) G-P(sol) polarization free energy of solvation -79.327 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.889 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.269 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds