Wall clock time and date at job start Tue Mar 31 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36208 * 117.00270 * 2 1 4 4 C 1.34089 * 122.49557 * 0.02699 * 3 2 1 5 5 S 1.70605 * 110.97100 * 179.72477 * 4 3 2 6 6 C 1.75815 * 91.62258 * 0.32415 * 5 4 3 7 7 C 1.46545 * 125.42415 * 179.97438 * 6 5 4 8 8 O 1.21714 * 119.99488 * 179.69458 * 7 6 5 9 9 N 1.34777 * 120.00096 * 359.69732 * 7 6 5 10 10 C 1.46502 * 119.99690 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46778 * 35.00360 * 10 9 7 12 12 C 1.52996 * 109.47411 * 275.00087 * 10 9 7 13 13 C 1.53004 * 109.46769 * 154.99870 * 10 9 7 14 14 H 1.09000 * 109.49550 * 304.93751 * 13 10 9 15 15 C 1.53045 * 109.49426 * 184.83931 * 13 10 9 16 16 C 1.53041 * 109.53461 * 178.68514 * 15 13 10 17 17 C 1.53195 * 109.31085 * 61.36396 * 16 15 13 18 18 N 1.46920 * 108.77874 * 305.36433 * 17 16 15 19 19 C 1.36939 * 120.62964 * 233.58781 * 18 17 16 20 20 H 1.08002 * 119.99793 * 151.84887 * 19 18 17 21 21 C 1.38812 * 120.00170 * 331.84042 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.07709 * 21 19 18 23 23 Si 1.86797 * 119.99838 * 163.07509 * 21 19 18 24 24 H 1.48492 * 109.47425 * 60.00174 * 23 21 19 25 25 H 1.48499 * 109.46713 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47372 * 300.00307 * 23 21 19 27 27 C 1.46927 * 118.73986 * 53.60849 * 18 17 16 28 28 C 1.36739 * 109.14488 * 359.67719 * 6 5 4 29 29 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47069 * 299.99836 * 1 2 3 31 31 H 1.08993 * 109.47151 * 59.99778 * 1 2 3 32 32 H 1.07997 * 124.51107 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99989 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47051 * 300.00158 * 12 10 9 35 35 H 1.09002 * 109.47174 * 60.00469 * 12 10 9 36 36 H 1.08997 * 109.47317 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.46108 * 298.70443 * 15 13 10 38 38 H 1.08998 * 109.45708 * 58.66724 * 15 13 10 39 39 H 1.09003 * 109.49590 * 301.41639 * 16 15 13 40 40 H 1.09000 * 109.52435 * 181.33286 * 16 15 13 41 41 H 1.09002 * 109.58724 * 185.57770 * 17 16 15 42 42 H 1.08999 * 109.70405 * 65.22572 * 17 16 15 43 43 H 0.96998 * 119.99484 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.58892 * 186.60489 * 27 18 17 45 45 H 1.09003 * 109.58506 * 66.17758 * 27 18 17 46 46 H 1.07997 * 123.36976 * 180.24003 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3668 2.3689 0.0005 5 16 2.4295 3.7036 0.0080 6 6 3.8354 2.6479 0.0005 7 6 5.2317 3.0927 0.0017 8 8 6.1314 2.2730 0.0017 9 7 5.5195 4.4094 0.0030 10 6 6.9154 4.8540 0.0047 11 1 7.5177 4.1626 -0.5846 12 6 7.4380 4.8880 1.4423 13 6 7.0051 6.2549 -0.6039 14 1 6.5528 6.2504 -1.5956 15 6 8.4738 6.6711 -0.7134 16 6 8.5663 8.0587 -1.3522 17 6 7.8407 9.0746 -0.4643 18 7 6.4671 8.6062 -0.2348 19 6 5.3985 9.4182 -0.5070 20 1 4.4472 8.9855 -0.7795 21 6 5.5380 10.7973 -0.4325 22 7 6.5621 11.3216 0.2067 23 14 4.2721 11.9089 -1.2395 24 1 2.9360 11.6509 -0.6451 25 1 4.6472 13.3286 -1.0179 26 1 4.2271 11.6311 -2.6976 27 6 6.2619 7.2503 0.2925 28 6 3.4183 1.3456 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2895 2.4444 0.0014 33 1 4.8023 5.0626 0.0026 34 1 6.8357 5.5794 2.0315 35 1 7.3741 3.8900 1.8758 36 1 8.4767 5.2184 1.4436 37 1 8.9185 6.6990 0.2814 38 1 9.0103 5.9506 -1.3307 39 1 8.0996 8.0376 -2.3370 40 1 9.6133 8.3449 -1.4517 41 1 7.8178 10.0442 -0.9618 42 1 8.3598 9.1657 0.4898 43 1 6.6597 12.2853 0.2584 44 1 5.1974 7.0162 0.2944 45 1 6.6531 7.1902 1.3082 46 1 4.0961 0.5048 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025507107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:46 Heat of formation + Delta-G solvation = -23.750550 kcal Electronic energy + Delta-G solvation = -27156.441508 eV Core-core repulsion = 23366.680603 eV Total energy + Delta-G solvation = -3789.760905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28441 -39.73427 -38.06358 -36.07232 -35.15405 -33.08319 -31.32927 -30.46974 -29.48890 -28.26094 -28.02013 -25.32175 -25.06030 -23.52351 -22.24316 -21.47914 -20.34439 -19.73162 -18.90723 -18.47203 -17.37938 -16.80499 -16.17579 -16.14510 -15.92246 -15.05516 -14.92301 -14.76776 -14.40077 -14.16927 -13.85200 -13.48403 -13.33907 -13.20370 -13.04394 -12.97720 -12.50190 -12.36833 -12.27385 -12.00532 -11.81551 -11.63454 -11.28044 -11.20215 -11.00748 -10.92654 -10.57436 -10.51339 -10.22840 -10.18895 -10.02459 -9.88129 -9.62845 -9.41362 -9.20679 -8.95921 -8.47672 -8.28679 -6.67973 -5.81019 -3.23927 0.24647 1.21004 1.64347 2.17469 2.85686 3.12440 3.30220 3.35774 3.42278 3.42986 4.46061 4.57097 4.66244 4.78942 4.80418 4.98538 5.04118 5.11708 5.21193 5.37811 5.40341 5.43501 5.56498 5.67010 5.67997 5.70003 5.80790 5.85215 5.99541 6.12700 6.21340 6.24348 6.32628 6.46909 6.56294 6.60424 6.69572 6.76498 6.85964 6.90313 6.96591 7.38985 7.47796 7.66125 7.76425 8.13114 8.42649 9.18832 9.82313 10.39223 11.27153 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002956 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.168341 B = 9470.961676 C =11257.303575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.306 6.306 3 C 0.101 3.899 4 C -0.344 4.344 5 S 0.240 5.760 6 C -0.237 4.237 7 C 0.590 3.410 8 O -0.530 6.530 9 N -0.713 5.713 10 C 0.150 3.850 11 H 0.085 0.915 12 C -0.166 4.166 13 C -0.114 4.114 14 H 0.073 0.927 15 C -0.100 4.100 16 C -0.142 4.142 17 C 0.169 3.831 18 N -0.590 5.590 19 C -0.255 4.255 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.151 3.849 28 C -0.071 4.071 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.171 0.829 33 H 0.400 0.600 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.046 0.954 45 H 0.027 0.973 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 -18.034 -0.080 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.044 3.956 4 C -0.482 4.482 5 S 0.507 5.493 6 C -0.358 4.358 7 C 0.375 3.625 8 O -0.409 6.409 9 N -0.364 5.364 10 C 0.046 3.954 11 H 0.103 0.897 12 C -0.224 4.224 13 C -0.135 4.135 14 H 0.091 0.909 15 C -0.138 4.138 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.024 3.976 28 C -0.106 4.106 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.188 0.812 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.045 0.955 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.541 -17.003 -0.033 18.600 hybrid contribution -1.332 -0.510 -0.414 1.485 sum -8.873 -17.512 -0.447 19.637 Atomic orbital electron populations 1.23043 0.78237 1.03971 1.01329 1.86113 1.21246 1.25174 1.89507 1.17546 0.91544 0.84732 1.01748 1.25110 1.05879 0.97614 1.19553 1.83216 0.92570 1.05818 1.67732 1.24542 0.98040 0.97555 1.15669 1.16837 0.86086 0.82910 0.76670 1.90825 1.46683 1.53060 1.50307 1.46075 1.09944 1.06089 1.74335 1.21109 0.80551 0.96326 0.97378 0.89662 1.22271 1.01923 1.01906 0.96304 1.21979 0.98255 0.92583 1.00683 0.90866 1.21417 0.94531 0.97270 1.00590 1.22178 0.99496 0.96103 1.00373 1.20789 0.83369 0.95990 0.95470 1.44004 1.02564 1.10681 1.74016 1.19112 0.91613 0.87498 1.40216 0.91831 1.25034 0.97974 0.97414 0.99083 1.70025 1.31347 1.10847 1.42310 0.86391 0.81084 0.79799 0.79608 1.20885 1.21654 1.21039 1.21002 0.96598 0.85900 0.94109 1.19917 0.92811 0.96900 1.01004 0.88135 0.92729 0.92720 0.81172 0.76450 0.91479 0.92751 0.91188 0.92168 0.93462 0.92794 0.93194 0.89629 0.96404 0.93572 0.93580 0.95540 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.93 101.05 1.00 1.18 16 2 O -0.31 -3.12 10.56 -20.40 -0.22 -3.34 16 3 C 0.10 1.11 6.61 -41.23 -0.27 0.83 16 4 C -0.34 -3.27 9.81 29.27 0.29 -2.98 16 5 S 0.24 2.45 22.15 -107.50 -2.38 0.07 16 6 C -0.24 -2.97 6.45 -36.78 -0.24 -3.21 16 7 C 0.59 8.60 7.75 -12.91 -0.10 8.50 16 8 O -0.53 -9.20 16.50 5.18 0.09 -9.12 16 9 N -0.71 -9.85 5.01 -55.15 -0.28 -10.13 16 10 C 0.15 2.18 2.35 -67.93 -0.16 2.02 16 11 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 12 C -0.17 -2.30 8.76 37.16 0.33 -1.98 16 13 C -0.11 -1.86 2.27 -90.50 -0.21 -2.06 16 14 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.10 -1.61 4.89 -26.69 -0.13 -1.74 16 16 C -0.14 -2.63 6.08 -26.61 -0.16 -2.80 16 17 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 18 N -0.59 -14.11 2.99 -172.32 -0.52 -14.62 16 19 C -0.25 -6.72 9.58 -15.06 -0.14 -6.87 16 20 H 0.06 1.63 7.89 -52.49 -0.41 1.22 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -25.58 11.20 55.49 0.62 -24.95 16 23 Si 0.90 21.14 29.59 -169.99 -5.03 16.12 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 2.91 5.26 -3.71 -0.02 2.89 16 28 C -0.07 -0.86 10.00 -40.31 -0.40 -1.27 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.28 7.84 -51.93 -0.41 -0.12 16 31 H 0.05 0.28 7.84 -51.93 -0.41 -0.12 16 32 H 0.17 1.21 6.96 -52.49 -0.37 0.84 16 33 H 0.40 5.17 6.38 -40.82 -0.26 4.91 16 34 H 0.07 0.96 6.23 -51.93 -0.32 0.63 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.92 6.59 -51.93 -0.34 0.58 16 37 H 0.06 0.95 6.63 -51.93 -0.34 0.61 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 44 H 0.05 0.85 6.75 -51.93 -0.35 0.50 16 45 H 0.03 0.53 6.06 -51.93 -0.31 0.21 16 46 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -30.90 375.45 -9.13 -40.03 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.75 Total: 3.84 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.32 Total: -3.56 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.17 Total: -49.70 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.13 Total: -12.45 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.38 Total: 0.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.90 -9.13 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025507107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.283 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds