Wall clock time and date at job start Tue Mar 31 2020 20:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36208 * 117.00270 * 2 1 4 4 C 1.34089 * 122.49557 * 0.02699 * 3 2 1 5 5 S 1.70605 * 110.97100 * 179.72477 * 4 3 2 6 6 C 1.75815 * 91.62258 * 0.32415 * 5 4 3 7 7 C 1.46545 * 125.42415 * 179.97438 * 6 5 4 8 8 O 1.21714 * 119.99488 * 179.69458 * 7 6 5 9 9 N 1.34777 * 120.00096 * 359.69732 * 7 6 5 10 10 C 1.46502 * 119.99690 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46778 * 35.00360 * 10 9 7 12 12 C 1.52996 * 109.47411 * 275.00087 * 10 9 7 13 13 C 1.53004 * 109.46769 * 154.99870 * 10 9 7 14 14 H 1.09000 * 109.49550 * 304.93751 * 13 10 9 15 15 C 1.53045 * 109.49426 * 184.83931 * 13 10 9 16 16 C 1.53041 * 109.53461 * 178.68514 * 15 13 10 17 17 C 1.53195 * 109.31085 * 61.36396 * 16 15 13 18 18 N 1.46920 * 108.77874 * 305.36433 * 17 16 15 19 19 C 1.36939 * 120.62964 * 233.58781 * 18 17 16 20 20 H 1.08002 * 119.99793 * 151.84887 * 19 18 17 21 21 C 1.38812 * 120.00170 * 331.84042 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.07709 * 21 19 18 23 23 Si 1.86797 * 119.99838 * 163.07509 * 21 19 18 24 24 H 1.48492 * 109.47425 * 60.00174 * 23 21 19 25 25 H 1.48499 * 109.46713 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47372 * 300.00307 * 23 21 19 27 27 C 1.46927 * 118.73986 * 53.60849 * 18 17 16 28 28 C 1.36739 * 109.14488 * 359.67719 * 6 5 4 29 29 H 1.09006 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47069 * 299.99836 * 1 2 3 31 31 H 1.08993 * 109.47151 * 59.99778 * 1 2 3 32 32 H 1.07997 * 124.51107 * 0.02562 * 4 3 2 33 33 H 0.97001 * 119.99989 * 359.97438 * 9 7 6 34 34 H 1.08993 * 109.47051 * 300.00158 * 12 10 9 35 35 H 1.09002 * 109.47174 * 60.00469 * 12 10 9 36 36 H 1.08997 * 109.47317 * 179.97438 * 12 10 9 37 37 H 1.08999 * 109.46108 * 298.70443 * 15 13 10 38 38 H 1.08998 * 109.45708 * 58.66724 * 15 13 10 39 39 H 1.09003 * 109.49590 * 301.41639 * 16 15 13 40 40 H 1.09000 * 109.52435 * 181.33286 * 16 15 13 41 41 H 1.09002 * 109.58724 * 185.57770 * 17 16 15 42 42 H 1.08999 * 109.70405 * 65.22572 * 17 16 15 43 43 H 0.96998 * 119.99484 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.58892 * 186.60489 * 27 18 17 45 45 H 1.09003 * 109.58506 * 66.17758 * 27 18 17 46 46 H 1.07997 * 123.36976 * 180.24003 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3668 2.3689 0.0005 5 16 2.4295 3.7036 0.0080 6 6 3.8354 2.6479 0.0005 7 6 5.2317 3.0927 0.0017 8 8 6.1314 2.2730 0.0017 9 7 5.5195 4.4094 0.0030 10 6 6.9154 4.8540 0.0047 11 1 7.5177 4.1626 -0.5846 12 6 7.4380 4.8880 1.4423 13 6 7.0051 6.2549 -0.6039 14 1 6.5528 6.2504 -1.5956 15 6 8.4738 6.6711 -0.7134 16 6 8.5663 8.0587 -1.3522 17 6 7.8407 9.0746 -0.4643 18 7 6.4671 8.6062 -0.2348 19 6 5.3985 9.4182 -0.5070 20 1 4.4472 8.9855 -0.7795 21 6 5.5380 10.7973 -0.4325 22 7 6.5621 11.3216 0.2067 23 14 4.2721 11.9089 -1.2395 24 1 2.9360 11.6509 -0.6451 25 1 4.6472 13.3286 -1.0179 26 1 4.2271 11.6311 -2.6976 27 6 6.2619 7.2503 0.2925 28 6 3.4183 1.3456 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2895 2.4444 0.0014 33 1 4.8023 5.0626 0.0026 34 1 6.8357 5.5794 2.0315 35 1 7.3741 3.8900 1.8758 36 1 8.4767 5.2184 1.4436 37 1 8.9185 6.6990 0.2814 38 1 9.0103 5.9506 -1.3307 39 1 8.0996 8.0376 -2.3370 40 1 9.6133 8.3449 -1.4517 41 1 7.8178 10.0442 -0.9618 42 1 8.3598 9.1657 0.4898 43 1 6.6597 12.2853 0.2584 44 1 5.1974 7.0162 0.2944 45 1 6.6531 7.1902 1.3082 46 1 4.0961 0.5048 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025507107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:45 Heat of formation + Delta-G solvation = -42.588009 kcal Electronic energy + Delta-G solvation = -27157.258361 eV Core-core repulsion = 23366.680603 eV Total energy + Delta-G solvation = -3790.577758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.28426 -40.67463 -39.47386 -37.01432 -36.51243 -34.70803 -32.73018 -32.24352 -30.47446 -29.40492 -28.74778 -27.19335 -26.06904 -24.72380 -23.86002 -22.66599 -21.68596 -20.77746 -20.01468 -19.68169 -18.61312 -18.11420 -17.24095 -17.10799 -16.80158 -16.75459 -16.20538 -15.79445 -15.68684 -15.48723 -15.20653 -15.01674 -14.69445 -14.18985 -14.08602 -13.94924 -13.87910 -13.70824 -13.56005 -13.28689 -13.01624 -12.72503 -12.68518 -12.59297 -12.28993 -12.07702 -11.99487 -11.94623 -11.91766 -11.68467 -11.49896 -11.34222 -11.12231 -11.02764 -10.48172 -10.25804 -9.95295 -9.06886 -8.61727 -7.83227 -5.28304 -0.64744 0.36817 0.82268 1.29855 1.49024 1.51822 1.57775 1.93260 2.06500 2.49309 2.53959 3.31555 3.57315 3.71029 3.90848 3.96417 4.00341 4.06095 4.09751 4.36957 4.38910 4.40997 4.41964 4.47985 4.56165 4.66854 4.71507 4.74656 4.82410 4.87015 4.88973 4.97501 5.01232 5.07085 5.16066 5.21325 5.31328 5.36923 5.43837 5.51079 5.60974 5.71034 5.82759 6.23240 6.36746 6.43168 7.01687 7.18984 7.90821 8.42573 9.22667 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.002956 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.168341 B = 9470.961676 C =11257.303575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.325 6.325 3 C 0.088 3.912 4 C -0.328 4.328 5 S 0.268 5.732 6 C -0.264 4.264 7 C 0.592 3.408 8 O -0.564 6.564 9 N -0.710 5.710 10 C 0.159 3.841 11 H 0.086 0.914 12 C -0.161 4.161 13 C -0.099 4.099 14 H 0.067 0.933 15 C -0.097 4.097 16 C -0.131 4.131 17 C 0.174 3.826 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.069 0.931 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.280 1.280 27 C 0.150 3.850 28 C -0.075 4.075 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.198 0.802 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.049 0.951 42 H -0.003 1.003 43 H 0.248 0.752 44 H 0.051 0.949 45 H 0.025 0.975 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.656 -19.258 -0.606 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.240 6.240 3 C 0.032 3.968 4 C -0.466 4.466 5 S 0.535 5.465 6 C -0.385 4.385 7 C 0.379 3.621 8 O -0.445 6.445 9 N -0.361 5.361 10 C 0.054 3.946 11 H 0.104 0.896 12 C -0.219 4.219 13 C -0.120 4.120 14 H 0.085 0.915 15 C -0.135 4.135 16 C -0.170 4.170 17 C 0.048 3.952 18 N -0.331 5.331 19 C -0.391 4.391 20 H 0.087 0.913 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.792 3.208 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.206 1.206 27 C 0.024 3.976 28 C -0.111 4.111 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.215 0.785 33 H 0.241 0.759 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.015 0.985 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.153 -18.246 -0.561 20.421 hybrid contribution -0.927 -0.187 -0.221 0.971 sum -10.080 -18.433 -0.782 21.024 Atomic orbital electron populations 1.23350 0.76142 1.05675 1.02303 1.86097 1.23444 1.24873 1.89573 1.17514 0.91194 0.85581 1.02543 1.25441 1.07150 0.96779 1.17262 1.83108 0.91300 1.05258 1.66839 1.24345 0.97838 0.98407 1.17880 1.17056 0.86714 0.82596 0.75768 1.90798 1.47933 1.53778 1.51997 1.46018 1.09833 1.06132 1.74093 1.20965 0.81077 0.94937 0.97594 0.89603 1.22221 1.02354 1.01651 0.95644 1.21761 0.98002 0.92589 0.99597 0.91459 1.21413 0.94624 0.96225 1.01245 1.22012 0.99819 0.96200 0.98992 1.20615 0.83709 0.95946 0.94914 1.44263 1.02260 1.11986 1.74626 1.19488 0.92419 0.88088 1.39067 0.91287 1.25762 0.99943 0.98810 1.00080 1.70183 1.33300 1.10494 1.44092 0.85406 0.79236 0.77481 0.78725 1.19872 1.22438 1.20596 1.21129 0.97573 0.84398 0.94478 1.20010 0.93712 0.96676 1.00744 0.86289 0.91672 0.91681 0.78455 0.75915 0.92040 0.92919 0.90255 0.91637 0.90658 0.93305 0.91257 0.93205 0.98513 0.94268 0.93011 0.95705 0.82812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.93 113.37 1.13 1.31 16 2 O -0.32 -6.13 10.56 -95.92 -1.01 -7.14 16 3 C 0.09 1.79 6.61 21.20 0.14 1.93 16 4 C -0.33 -5.42 9.81 66.87 0.66 -4.76 16 5 S 0.27 4.95 22.15 -56.49 -1.25 3.70 16 6 C -0.26 -6.41 6.45 24.09 0.16 -6.26 16 7 C 0.59 16.94 7.75 86.41 0.67 17.61 16 8 O -0.56 -19.52 16.50 -4.39 -0.07 -19.59 16 9 N -0.71 -18.85 5.01 -446.61 -2.24 -21.09 16 10 C 0.16 4.35 2.35 44.99 0.11 4.46 16 11 H 0.09 2.43 7.58 -2.38 -0.02 2.41 16 12 C -0.16 -4.23 8.76 71.98 0.63 -3.60 16 13 C -0.10 -3.06 2.27 -10.71 -0.02 -3.08 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.10 -2.92 4.89 30.62 0.15 -2.77 16 16 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 17 C 0.17 8.16 5.30 86.36 0.46 8.61 16 18 N -0.61 -29.13 2.99 -699.10 -2.09 -31.22 16 19 C -0.26 -13.75 9.58 84.03 0.81 -12.95 16 20 H 0.07 3.49 7.89 -2.91 -0.02 3.47 16 21 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 22 N -0.93 -54.42 11.20 21.65 0.24 -54.18 16 23 Si 0.96 43.75 29.59 68.60 2.03 45.78 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 27 C 0.15 5.66 5.26 86.36 0.45 6.11 16 28 C -0.08 -1.79 10.00 21.80 0.22 -1.57 16 29 H 0.12 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.49 7.84 -2.39 -0.02 0.47 16 31 H 0.06 0.49 7.84 -2.39 -0.02 0.47 16 32 H 0.20 2.07 6.96 -2.91 -0.02 2.05 16 33 H 0.40 9.95 6.38 -92.71 -0.59 9.36 16 34 H 0.06 1.68 6.23 -2.39 -0.01 1.67 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.93 6.59 -2.39 -0.02 1.92 16 37 H 0.06 1.93 6.63 -2.39 -0.02 1.91 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.68 6.06 -2.39 -0.01 2.67 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 44 H 0.05 1.86 6.75 -2.39 -0.02 1.85 16 45 H 0.03 0.97 6.06 -2.39 -0.01 0.95 16 46 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -67.45 375.45 2.16 -65.29 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.41 Total: 20.26 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 6.15 Total: -1.81 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -4.09 Total: -106.49 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.09 Total: -26.73 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -1.25 Total: 3.70 kcal Total: -67.45 2.16 -65.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025507107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.701 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds