Wall clock time and date at job start Tue Mar 31 2020 20:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35783 * 117.00460 * 2 1 4 4 C 1.38027 * 123.46686 * 0.20238 * 3 2 1 5 5 C 1.33614 * 115.08219 * 180.27435 * 4 3 2 6 6 S 1.70570 * 111.14660 * 359.74202 * 5 4 3 7 7 C 1.37265 * 123.47666 * 179.97438 * 3 2 1 8 8 C 1.41727 * 125.47346 * 0.02562 * 7 3 2 9 9 O 1.21775 * 119.99478 * 359.71211 * 8 7 3 10 10 N 1.34775 * 120.00045 * 179.71585 * 8 7 3 11 11 C 1.46500 * 119.99728 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47459 * 35.00249 * 11 10 8 13 13 C 1.52996 * 109.47081 * 274.99813 * 11 10 8 14 14 C 1.53005 * 109.46672 * 155.00338 * 11 10 8 15 15 H 1.08992 * 109.50061 * 60.06165 * 14 11 10 16 16 C 1.53045 * 109.49460 * 180.16374 * 14 11 10 17 17 C 1.53035 * 109.53693 * 181.31494 * 16 14 11 18 18 C 1.53193 * 109.31317 * 298.63417 * 17 16 14 19 19 N 1.46924 * 108.77678 * 54.63463 * 18 17 16 20 20 C 1.36938 * 120.63374 * 126.37144 * 19 18 17 21 21 H 1.08000 * 119.99916 * 331.84700 * 20 19 18 22 22 C 1.38807 * 120.00058 * 151.84577 * 20 19 18 23 23 N 1.31619 * 120.00332 * 343.07236 * 22 20 19 24 24 Si 1.86801 * 119.99898 * 163.07851 * 22 20 19 25 25 H 1.48499 * 109.47424 * 89.99812 * 24 22 20 26 26 H 1.48502 * 109.46962 * 209.99900 * 24 22 20 27 27 H 1.48503 * 109.47177 * 329.99403 * 24 22 20 28 28 C 1.46927 * 118.74002 * 306.39243 * 19 18 17 29 29 H 1.08997 * 109.47673 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47190 * 299.99822 * 1 2 3 31 31 H 1.09005 * 109.47341 * 60.00097 * 1 2 3 32 32 H 1.08006 * 122.45931 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.42452 * 179.74905 * 5 4 3 34 34 H 0.96996 * 119.99752 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47189 * 180.02562 * 13 11 10 36 36 H 1.08997 * 109.47744 * 300.00181 * 13 11 10 37 37 H 1.08999 * 109.47297 * 60.00346 * 13 11 10 38 38 H 1.09003 * 109.45886 * 301.33324 * 16 14 11 39 39 H 1.08998 * 109.46139 * 61.29432 * 16 14 11 40 40 H 1.09000 * 109.50219 * 178.67776 * 17 16 14 41 41 H 1.09004 * 109.52652 * 58.59865 * 17 16 14 42 42 H 1.09005 * 109.58663 * 294.84862 * 18 17 16 43 43 H 1.09001 * 109.70770 * 174.49458 * 18 17 16 44 44 H 0.96999 * 119.99975 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.58420 * 293.82441 * 28 19 18 46 46 H 1.08999 * 109.59179 * 173.39896 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3652 2.4108 0.0041 5 6 2.1390 3.5000 -0.0024 6 16 3.7923 3.0804 -0.0070 7 6 3.4094 1.3645 0.0005 8 6 4.3567 0.3104 0.0006 9 8 3.9792 -0.8474 0.0055 10 7 5.6753 0.5893 -0.0047 11 6 6.6545 -0.5004 -0.0040 12 1 6.2693 -1.3354 -0.5893 13 6 6.9065 -0.9587 1.4338 14 6 7.9658 -0.0079 -0.6196 15 1 8.3519 0.8263 -0.0340 16 6 8.9879 -1.1470 -0.6230 17 6 10.3103 -0.6463 -1.2084 18 6 10.0852 -0.1944 -2.6548 19 7 9.0014 0.7974 -2.6771 20 6 9.1877 2.0213 -3.2623 21 1 10.1754 2.4562 -3.3019 22 6 8.1069 2.7030 -3.8045 23 7 6.9865 2.0622 -4.0618 24 14 8.2428 4.5301 -4.1693 25 1 8.7415 4.7226 -5.5547 26 1 6.9065 5.1630 -4.0318 27 1 9.1884 5.1571 -3.2111 28 6 7.7141 0.4512 -2.0593 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2866 2.4660 0.0080 33 1 1.7663 4.5137 -0.0044 34 1 5.9759 1.5115 -0.0081 35 1 7.6354 -1.7691 1.4343 36 1 7.2917 -0.1238 2.0191 37 1 5.9724 -1.3094 1.8724 38 1 9.1504 -1.4921 0.3981 39 1 8.6114 -1.9710 -1.2290 40 1 11.0448 -1.4514 -1.1889 41 1 10.6755 0.1937 -0.6175 42 1 9.8077 -1.0527 -3.2668 43 1 10.9985 0.2535 -3.0463 44 1 6.2314 2.5385 -4.4411 45 1 7.2433 -0.3545 -2.6228 46 1 7.0636 1.3258 -2.0555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025601305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:48 Heat of formation + Delta-G solvation = -21.879986 kcal Electronic energy + Delta-G solvation = -28134.138072 eV Core-core repulsion = 24344.458281 eV Total energy + Delta-G solvation = -3789.679791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21608 -39.14703 -37.65641 -35.96999 -34.91369 -33.01218 -31.50660 -30.10140 -29.60035 -28.56910 -27.05018 -25.23172 -24.80824 -23.29103 -21.97961 -21.31216 -20.12145 -19.60886 -19.25316 -18.25825 -16.94199 -16.62953 -15.97907 -15.91655 -15.32407 -15.00380 -14.75078 -14.44129 -14.07190 -13.91658 -13.62189 -13.37634 -13.23280 -13.08503 -12.84615 -12.63879 -12.52798 -12.36787 -12.05335 -11.84475 -11.62514 -11.28633 -11.17286 -11.00279 -10.96955 -10.84375 -10.64039 -10.39129 -10.20077 -10.01255 -9.85413 -9.63580 -9.45363 -9.32454 -8.87256 -8.52756 -8.42277 -8.06375 -6.61508 -5.74856 -3.17815 0.53521 1.46255 1.79090 2.34680 3.36537 3.44031 3.44237 3.46148 3.61100 3.71182 4.50728 4.58312 4.96399 4.97880 5.03641 5.13195 5.34061 5.38435 5.39340 5.53983 5.57228 5.61072 5.65172 5.69411 5.71437 5.86668 5.90434 6.05733 6.16615 6.23751 6.28869 6.39160 6.51584 6.53975 6.56150 6.73241 6.84533 6.95776 6.98518 7.07789 7.22850 7.41204 7.71805 7.82319 7.95728 8.48335 8.67458 9.24699 9.88456 10.46417 11.32641 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004444 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.071980 B = 6299.812526 C = 8167.179060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.271 6.271 3 C 0.180 3.820 4 C -0.215 4.215 5 C -0.206 4.206 6 S 0.244 5.756 7 C -0.316 4.316 8 C 0.596 3.404 9 O -0.531 6.531 10 N -0.716 5.716 11 C 0.153 3.847 12 H 0.085 0.915 13 C -0.161 4.161 14 C -0.121 4.121 15 H 0.067 0.933 16 C -0.101 4.101 17 C -0.133 4.133 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.898 5.898 24 Si 0.895 3.105 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.181 3.819 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.147 0.853 33 H 0.172 0.828 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.016 0.984 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.769 0.442 11.771 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.183 6.183 3 C 0.120 3.880 4 C -0.249 4.249 5 C -0.344 4.344 6 S 0.510 5.490 7 C -0.436 4.436 8 C 0.384 3.616 9 O -0.410 6.410 10 N -0.367 5.367 11 C 0.048 3.952 12 H 0.103 0.897 13 C -0.219 4.219 14 C -0.142 4.142 15 H 0.085 0.915 16 C -0.140 4.140 17 C -0.172 4.172 18 C 0.017 3.983 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.542 5.542 24 Si 0.725 3.275 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.055 3.945 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.190 0.810 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.740 0.310 11.664 14.579 hybrid contribution -1.631 0.928 -0.364 1.912 sum -10.371 1.238 11.300 15.388 Atomic orbital electron populations 1.23147 0.78764 1.04191 1.01098 1.86338 1.20509 1.24165 1.87246 1.18238 0.90233 0.85346 0.94179 1.19990 1.01855 0.90981 1.12072 1.25050 0.99589 1.03676 1.06098 1.83334 1.02812 0.95608 1.67246 1.22858 0.95449 0.98496 1.26820 1.15475 0.81725 0.87592 0.76781 1.90829 1.79640 1.20077 1.50464 1.45905 1.05271 1.10122 1.75377 1.20944 0.88472 0.89796 0.95940 0.89690 1.22212 1.01601 1.01227 0.96852 1.22158 0.92733 0.98043 1.01251 0.91485 1.21436 0.95575 0.97436 0.99505 1.21991 0.96121 0.99577 0.99505 1.20925 0.92385 0.92310 0.92712 1.44040 1.09788 1.13036 1.64605 1.19159 0.94621 0.93376 1.31148 0.91836 1.25021 0.97429 0.98471 0.98525 1.70046 1.04029 1.34236 1.45880 0.86410 0.76918 0.85907 0.78270 1.21452 1.21493 1.20479 1.20768 0.88089 0.99582 0.86091 0.88036 0.92805 0.92672 0.83507 0.81040 0.77043 0.91559 0.92873 0.92669 0.93095 0.92591 0.93199 0.92492 0.96623 0.93026 0.93671 0.96544 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.94 101.05 1.00 1.23 16 2 O -0.27 -4.20 9.36 -36.58 -0.34 -4.54 16 3 C 0.18 2.73 6.70 -40.01 -0.27 2.47 16 4 C -0.21 -2.48 9.17 -41.28 -0.38 -2.86 16 5 C -0.21 -2.21 10.90 29.11 0.32 -1.89 16 6 S 0.24 3.20 22.00 -107.50 -2.37 0.84 16 7 C -0.32 -5.25 6.28 -38.60 -0.24 -5.49 16 8 C 0.60 11.39 7.56 -14.93 -0.11 11.28 16 9 O -0.53 -11.65 15.50 -12.40 -0.19 -11.85 16 10 N -0.72 -12.72 4.46 -56.67 -0.25 -12.97 16 11 C 0.15 2.69 2.16 -67.93 -0.15 2.54 16 12 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 13 C -0.16 -2.37 9.14 37.16 0.34 -2.03 16 14 C -0.12 -2.26 1.97 -90.49 -0.18 -2.44 16 15 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.10 -1.71 4.86 -26.69 -0.13 -1.84 16 17 C -0.13 -2.31 6.08 -26.61 -0.16 -2.47 16 18 C 0.14 3.04 6.52 -3.71 -0.02 3.01 16 19 N -0.59 -14.80 2.99 -172.31 -0.52 -15.32 16 20 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 21 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 22 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 23 N -0.90 -25.74 11.20 55.49 0.62 -25.12 16 24 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.18 4.27 4.34 -3.71 -0.02 4.25 16 29 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.05 0.45 7.89 -51.93 -0.41 0.04 16 32 H 0.15 1.25 6.99 -52.48 -0.37 0.88 16 33 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.40 6.66 7.39 -40.82 -0.30 6.36 16 35 H 0.07 0.89 6.40 -51.93 -0.33 0.55 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.74 6.36 -51.93 -0.33 0.41 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.28 5.57 -51.93 -0.29 2.00 16 LS Contribution 378.06 15.07 5.70 5.70 Total: -1.00 -33.29 378.06 -9.63 -42.92 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.02 Total: 5.43 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.23 Total: -1.24 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.15 Total: -53.41 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.53 Total: -16.39 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.37 Total: 0.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.29 -9.63 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.037 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds