Wall clock time and date at job start Tue Mar 31 2020 20:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35783 * 117.00460 * 2 1 4 4 C 1.38027 * 123.46686 * 0.20238 * 3 2 1 5 5 C 1.33614 * 115.08219 * 180.27435 * 4 3 2 6 6 S 1.70570 * 111.14660 * 359.74202 * 5 4 3 7 7 C 1.37265 * 123.47666 * 179.97438 * 3 2 1 8 8 C 1.41727 * 125.47346 * 0.02562 * 7 3 2 9 9 O 1.21775 * 119.99478 * 359.71211 * 8 7 3 10 10 N 1.34775 * 120.00045 * 179.71585 * 8 7 3 11 11 C 1.46500 * 119.99728 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47459 * 35.00249 * 11 10 8 13 13 C 1.52996 * 109.47081 * 274.99813 * 11 10 8 14 14 C 1.53005 * 109.46672 * 155.00338 * 11 10 8 15 15 H 1.08992 * 109.50061 * 60.06165 * 14 11 10 16 16 C 1.53045 * 109.49460 * 180.16374 * 14 11 10 17 17 C 1.53035 * 109.53693 * 181.31494 * 16 14 11 18 18 C 1.53193 * 109.31317 * 298.63417 * 17 16 14 19 19 N 1.46924 * 108.77678 * 54.63463 * 18 17 16 20 20 C 1.36938 * 120.63374 * 126.37144 * 19 18 17 21 21 H 1.08000 * 119.99916 * 331.84700 * 20 19 18 22 22 C 1.38807 * 120.00058 * 151.84577 * 20 19 18 23 23 N 1.31619 * 120.00332 * 343.07236 * 22 20 19 24 24 Si 1.86801 * 119.99898 * 163.07851 * 22 20 19 25 25 H 1.48499 * 109.47424 * 89.99812 * 24 22 20 26 26 H 1.48502 * 109.46962 * 209.99900 * 24 22 20 27 27 H 1.48503 * 109.47177 * 329.99403 * 24 22 20 28 28 C 1.46927 * 118.74002 * 306.39243 * 19 18 17 29 29 H 1.08997 * 109.47673 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47190 * 299.99822 * 1 2 3 31 31 H 1.09005 * 109.47341 * 60.00097 * 1 2 3 32 32 H 1.08006 * 122.45931 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.42452 * 179.74905 * 5 4 3 34 34 H 0.96996 * 119.99752 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47189 * 180.02562 * 13 11 10 36 36 H 1.08997 * 109.47744 * 300.00181 * 13 11 10 37 37 H 1.08999 * 109.47297 * 60.00346 * 13 11 10 38 38 H 1.09003 * 109.45886 * 301.33324 * 16 14 11 39 39 H 1.08998 * 109.46139 * 61.29432 * 16 14 11 40 40 H 1.09000 * 109.50219 * 178.67776 * 17 16 14 41 41 H 1.09004 * 109.52652 * 58.59865 * 17 16 14 42 42 H 1.09005 * 109.58663 * 294.84862 * 18 17 16 43 43 H 1.09001 * 109.70770 * 174.49458 * 18 17 16 44 44 H 0.96999 * 119.99975 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.58420 * 293.82441 * 28 19 18 46 46 H 1.08999 * 109.59179 * 173.39896 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.3652 2.4108 0.0041 5 6 2.1390 3.5000 -0.0024 6 16 3.7923 3.0804 -0.0070 7 6 3.4094 1.3645 0.0005 8 6 4.3567 0.3104 0.0006 9 8 3.9792 -0.8474 0.0055 10 7 5.6753 0.5893 -0.0047 11 6 6.6545 -0.5004 -0.0040 12 1 6.2693 -1.3354 -0.5893 13 6 6.9065 -0.9587 1.4338 14 6 7.9658 -0.0079 -0.6196 15 1 8.3519 0.8263 -0.0340 16 6 8.9879 -1.1470 -0.6230 17 6 10.3103 -0.6463 -1.2084 18 6 10.0852 -0.1944 -2.6548 19 7 9.0014 0.7974 -2.6771 20 6 9.1877 2.0213 -3.2623 21 1 10.1754 2.4562 -3.3019 22 6 8.1069 2.7030 -3.8045 23 7 6.9865 2.0622 -4.0618 24 14 8.2428 4.5301 -4.1693 25 1 8.7415 4.7226 -5.5547 26 1 6.9065 5.1630 -4.0318 27 1 9.1884 5.1571 -3.2111 28 6 7.7141 0.4512 -2.0593 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2866 2.4660 0.0080 33 1 1.7663 4.5137 -0.0044 34 1 5.9759 1.5115 -0.0081 35 1 7.6354 -1.7691 1.4343 36 1 7.2917 -0.1238 2.0191 37 1 5.9724 -1.3094 1.8724 38 1 9.1504 -1.4921 0.3981 39 1 8.6114 -1.9710 -1.2290 40 1 11.0448 -1.4514 -1.1889 41 1 10.6755 0.1937 -0.6175 42 1 9.8077 -1.0527 -3.2668 43 1 10.9985 0.2535 -3.0463 44 1 6.2314 2.5385 -4.4411 45 1 7.2433 -0.3545 -2.6228 46 1 7.0636 1.3258 -2.0555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025601305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:48 Heat of formation + Delta-G solvation = -42.711380 kcal Electronic energy + Delta-G solvation = -28135.041389 eV Core-core repulsion = 24344.458281 eV Total energy + Delta-G solvation = -3790.583108 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.41467 -40.46287 -39.23999 -36.99202 -36.50928 -34.79651 -33.05528 -31.71652 -30.97683 -29.99285 -27.95370 -27.07483 -25.94041 -24.72270 -23.69195 -22.71125 -21.57954 -20.90608 -20.55510 -19.57461 -18.66704 -17.98868 -17.24252 -16.94162 -16.81985 -16.55439 -15.98897 -15.77834 -15.69496 -15.29062 -14.94109 -14.82514 -14.67110 -14.58140 -14.13593 -14.05700 -13.83370 -13.67046 -13.43788 -13.28847 -12.92938 -12.69794 -12.58717 -12.52600 -12.35190 -12.11135 -12.03998 -11.95648 -11.92459 -11.69641 -11.49025 -11.25821 -11.07518 -10.89508 -10.52170 -10.12832 -9.75904 -9.10465 -8.63722 -7.82152 -5.29529 -0.51338 0.42671 0.83000 1.33229 1.48292 1.49444 1.59906 2.24312 2.36856 2.50926 2.54200 3.29696 3.57810 3.69909 3.96539 4.05418 4.09296 4.14987 4.23548 4.29634 4.31862 4.37463 4.46812 4.51103 4.60777 4.67547 4.69210 4.77745 4.83138 4.86807 4.89631 5.00444 5.06680 5.11725 5.16394 5.20197 5.29432 5.40008 5.47936 5.56966 5.61720 5.70829 5.80662 6.26604 6.42307 6.55926 7.18078 7.26108 7.89439 8.42796 9.22926 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.004444 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.071980 B = 6299.812526 C = 8167.179060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.308 6.308 3 C 0.182 3.818 4 C -0.220 4.220 5 C -0.176 4.176 6 S 0.237 5.763 7 C -0.373 4.373 8 C 0.591 3.409 9 O -0.576 6.576 10 N -0.715 5.715 11 C 0.155 3.845 12 H 0.055 0.945 13 C -0.148 4.148 14 C -0.105 4.105 15 H 0.073 0.927 16 C -0.100 4.100 17 C -0.120 4.120 18 C 0.134 3.866 19 N -0.611 5.611 20 C -0.267 4.267 21 H 0.066 0.934 22 C -0.045 4.045 23 N -0.931 5.931 24 Si 0.961 3.039 25 H -0.290 1.290 26 H -0.287 1.287 27 H -0.267 1.267 28 C 0.193 3.807 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.184 0.816 33 H 0.215 0.785 34 H 0.399 0.601 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.004 0.996 43 H 0.053 0.947 44 H 0.248 0.752 45 H -0.027 1.027 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.954 2.105 13.507 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.220 6.220 3 C 0.120 3.880 4 C -0.253 4.253 5 C -0.314 4.314 6 S 0.502 5.498 7 C -0.492 4.492 8 C 0.381 3.619 9 O -0.458 6.458 10 N -0.365 5.365 11 C 0.050 3.950 12 H 0.073 0.927 13 C -0.206 4.206 14 C -0.125 4.125 15 H 0.091 0.909 16 C -0.137 4.137 17 C -0.159 4.159 18 C 0.009 3.991 19 N -0.334 5.334 20 C -0.397 4.397 21 H 0.084 0.916 22 C -0.240 4.240 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.192 1.192 28 C 0.067 3.933 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.201 0.799 33 H 0.231 0.769 34 H 0.234 0.766 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.071 0.929 44 H 0.057 0.943 45 H -0.009 1.009 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.894 1.971 13.418 16.218 hybrid contribution -1.649 0.390 -0.991 1.963 sum -10.544 2.360 12.427 16.467 Atomic orbital electron populations 1.23498 0.75919 1.05705 1.02976 1.86287 1.23660 1.25175 1.86900 1.18707 0.90167 0.86516 0.92562 1.20252 1.03588 0.89452 1.11970 1.25562 0.97699 1.05413 1.02695 1.83267 1.05154 0.93445 1.67917 1.22847 0.95922 0.99698 1.30741 1.15888 0.82269 0.87841 0.75867 1.90774 1.80293 1.21876 1.52905 1.45920 1.05233 1.10296 1.75082 1.20902 0.87649 0.88904 0.97504 0.92672 1.22105 1.01739 1.02375 0.94400 1.21931 0.93962 0.99075 0.97572 0.90900 1.21467 0.94532 0.96181 1.01569 1.21870 0.97093 1.00766 0.96201 1.21131 0.91206 0.91125 0.95622 1.44339 1.10764 1.13387 1.64904 1.19501 0.94809 0.94467 1.30912 0.91637 1.25766 0.97074 1.02472 0.98713 1.70229 1.04658 1.35702 1.47067 0.85391 0.77005 0.80875 0.77902 1.21658 1.21301 1.19157 1.20492 0.87230 0.96950 0.88585 0.86943 0.90397 0.91137 0.79921 0.76865 0.76645 0.89482 0.91197 0.93724 0.89332 0.93416 0.89796 0.92087 0.97776 0.92871 0.94256 1.00900 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.94 113.37 1.13 1.36 16 2 O -0.31 -9.69 9.36 -74.36 -0.70 -10.39 16 3 C 0.18 5.52 6.70 21.99 0.15 5.67 16 4 C -0.22 -4.54 9.17 21.17 0.19 -4.34 16 5 C -0.18 -3.26 10.90 66.77 0.73 -2.53 16 6 S 0.24 6.13 22.00 -56.49 -1.24 4.89 16 7 C -0.37 -12.82 6.28 22.90 0.14 -12.68 16 8 C 0.59 24.02 7.56 85.10 0.64 24.67 16 9 O -0.58 -27.09 15.50 12.17 0.19 -26.90 16 10 N -0.71 -26.79 4.46 -451.38 -2.01 -28.80 16 11 C 0.16 5.63 2.16 44.99 0.10 5.72 16 12 H 0.06 2.32 7.58 -2.39 -0.02 2.31 16 13 C -0.15 -4.24 9.14 71.98 0.66 -3.59 16 14 C -0.10 -3.94 1.97 -10.71 -0.02 -3.96 16 15 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 16 C -0.10 -3.20 4.86 30.62 0.15 -3.05 16 17 C -0.12 -3.92 6.08 30.67 0.19 -3.74 16 18 C 0.13 5.71 6.52 86.36 0.56 6.27 16 19 N -0.61 -31.25 2.99 -699.08 -2.09 -33.35 16 20 C -0.27 -14.73 9.58 84.03 0.81 -13.93 16 21 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 22 C -0.04 -2.48 4.92 84.86 0.42 -2.06 16 23 N -0.93 -55.47 11.20 21.65 0.24 -55.22 16 24 Si 0.96 43.99 29.59 68.60 2.03 46.02 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 26 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 28 C 0.19 9.56 4.34 86.36 0.37 9.94 16 29 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.08 0.99 7.87 -2.38 -0.02 0.97 16 31 H 0.07 1.02 7.89 -2.38 -0.02 1.00 16 32 H 0.18 2.36 6.99 -2.91 -0.02 2.34 16 33 H 0.21 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.40 14.13 7.39 -92.71 -0.69 13.45 16 35 H 0.09 2.11 6.40 -2.38 -0.02 2.10 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.09 2.24 6.36 -2.39 -0.02 2.23 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 43 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 44 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 45 H -0.03 -1.54 8.14 -2.38 -0.02 -1.56 16 46 H 0.06 3.41 5.57 -2.39 -0.01 3.39 16 Total: -1.00 -77.65 378.06 2.93 -74.72 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.31 Total: 25.28 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.21 Total: 3.76 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -3.86 Total: -117.37 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.51 Total: -37.29 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.24 Total: 4.89 kcal Total: -77.65 2.93 -74.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.009 kcal (2) G-P(sol) polarization free energy of solvation -77.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds