Wall clock time and date at job start Tue Mar 31 2020 20:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35778 * 117.00296 * 2 1 4 4 C 1.38030 * 123.47159 * 0.19785 * 3 2 1 5 5 C 1.33611 * 115.08878 * 180.27311 * 4 3 2 6 6 S 1.70580 * 111.14258 * 359.75005 * 5 4 3 7 7 C 1.37263 * 123.47461 * 180.02562 * 3 2 1 8 8 C 1.41724 * 125.47688 * 0.02562 * 7 3 2 9 9 O 1.21778 * 119.99669 * 359.71979 * 8 7 3 10 10 N 1.34778 * 120.00326 * 179.71582 * 8 7 3 11 11 C 1.46501 * 120.00159 * 180.02562 * 10 8 7 12 12 H 1.09004 * 109.46886 * 324.99953 * 11 10 8 13 13 C 1.52996 * 109.47174 * 84.99822 * 11 10 8 14 14 C 1.53000 * 109.47194 * 205.00397 * 11 10 8 15 15 H 1.09002 * 109.49463 * 299.93760 * 14 11 10 16 16 C 1.53042 * 109.49466 * 179.83638 * 14 11 10 17 17 C 1.53040 * 109.53399 * 178.68321 * 16 14 11 18 18 C 1.52757 * 109.38837 * 61.23930 * 17 16 14 19 19 N 1.46933 * 109.00863 * 305.59166 * 18 17 16 20 20 C 1.36935 * 120.62781 * 233.58305 * 19 18 17 21 21 H 1.07995 * 119.99873 * 152.09995 * 20 19 18 22 22 C 1.38811 * 119.99806 * 332.09376 * 20 19 18 23 23 N 1.31615 * 120.00651 * 335.28172 * 22 20 19 24 24 Si 1.86803 * 119.99607 * 155.00135 * 22 20 19 25 25 H 1.48496 * 109.47436 * 60.00138 * 24 22 20 26 26 H 1.48503 * 109.47168 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47355 * 300.00110 * 24 22 20 28 28 C 1.46923 * 118.73785 * 53.30252 * 19 18 17 29 29 H 1.09004 * 109.47120 * 59.99948 * 1 2 3 30 30 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47101 * 300.00080 * 1 2 3 32 32 H 1.08002 * 122.45412 * 0.02562 * 4 3 2 33 33 H 1.07994 * 124.43082 * 179.74702 * 5 4 3 34 34 H 0.96998 * 119.99988 * 0.02562 * 10 8 7 35 35 H 1.08997 * 109.47311 * 179.97438 * 13 11 10 36 36 H 1.08994 * 109.47288 * 300.00580 * 13 11 10 37 37 H 1.09010 * 109.46697 * 60.00397 * 13 11 10 38 38 H 1.08990 * 109.46013 * 298.70087 * 16 14 11 39 39 H 1.09000 * 109.45871 * 58.66279 * 16 14 11 40 40 H 1.09003 * 109.50007 * 181.32125 * 17 16 14 41 41 H 1.09008 * 109.49676 * 301.38120 * 17 16 14 42 42 H 1.08994 * 109.51278 * 185.70471 * 18 17 16 43 43 H 1.09000 * 109.43033 * 65.42089 * 18 17 16 44 44 H 0.97009 * 119.99439 * 353.96783 * 23 22 20 45 45 H 1.09006 * 109.58528 * 66.43409 * 28 19 18 46 46 H 1.09001 * 109.58720 * 186.85700 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3652 2.4108 0.0040 5 6 2.1389 3.5001 -0.0025 6 16 3.7923 3.0804 -0.0071 7 6 3.4093 1.3645 -0.0005 8 6 4.3567 0.3104 -0.0016 9 8 3.9793 -0.8474 0.0030 10 7 5.6753 0.5894 -0.0078 11 6 6.6546 -0.5003 -0.0095 12 1 6.2738 -1.3319 0.5834 13 6 6.8958 -0.9669 -1.4465 14 6 7.9704 -0.0044 0.5935 15 1 8.3521 0.8266 0.0003 16 6 8.9925 -1.1434 0.5957 17 6 10.3191 -0.6394 1.1685 18 6 10.1066 -0.1772 2.6089 19 7 9.0212 0.8126 2.6387 20 6 9.2118 2.0399 3.2154 21 1 8.6443 2.8920 2.8717 22 6 10.1344 2.1886 4.2418 23 7 10.4629 1.1544 4.9866 24 14 10.9158 3.8551 4.5610 25 1 9.8568 4.8446 4.8843 26 1 11.8598 3.7488 5.7024 27 1 11.6525 4.2966 3.3495 28 6 7.7294 0.4629 2.0324 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2866 2.4660 0.0078 33 1 1.7663 4.5137 -0.0045 34 1 5.9759 1.5116 -0.0111 35 1 7.6248 -1.7772 -1.4478 36 1 5.9585 -1.3201 -1.8761 37 1 7.2767 -0.1351 -2.0394 38 1 8.6205 -1.9639 1.2092 39 1 9.1473 -1.4943 -0.4246 40 1 11.0536 -1.4446 1.1481 41 1 10.6796 0.1970 0.5696 42 1 11.0241 0.2751 2.9852 43 1 9.8379 -1.0329 3.2283 44 1 9.9976 0.3103 4.8766 45 1 7.2628 -0.3396 2.6039 46 1 7.0788 1.3375 2.0285 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025601306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:51 Heat of formation + Delta-G solvation = -46.745240 kcal Electronic energy + Delta-G solvation = -27666.133421 eV Core-core repulsion = 23875.375392 eV Total energy + Delta-G solvation = -3790.758029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46862 -40.54683 -39.42292 -37.06364 -36.76570 -34.83656 -32.81592 -32.28892 -30.99974 -29.81254 -27.98037 -27.03465 -25.94474 -24.75195 -23.80589 -22.77419 -21.67606 -20.99005 -20.58033 -19.64726 -19.32521 -18.03560 -17.23566 -16.98235 -16.70283 -16.27954 -16.12297 -15.84539 -15.76744 -15.43433 -15.33486 -14.91630 -14.84586 -14.63341 -14.27081 -14.05357 -13.92383 -13.70551 -13.45927 -13.42744 -12.90895 -12.65238 -12.59294 -12.54849 -12.33357 -12.05546 -11.95707 -11.92360 -11.88039 -11.71152 -11.63905 -11.40020 -11.12475 -10.96327 -10.45927 -10.19985 -9.80112 -9.11528 -8.92937 -8.23173 -5.39287 -0.53885 0.41123 0.80616 1.31138 1.59457 1.67574 1.86081 2.20478 2.27020 2.48807 2.67161 3.21951 3.44141 3.67805 3.79268 3.92389 3.95498 4.05550 4.18406 4.24460 4.28493 4.36076 4.38672 4.40755 4.51389 4.59462 4.64089 4.68638 4.73653 4.77706 4.83500 4.84745 4.94125 5.00469 5.08757 5.12735 5.16664 5.21961 5.26629 5.38420 5.50503 5.57252 5.84102 6.24024 6.39088 6.50601 7.06090 7.21133 7.79008 8.24086 9.00922 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003294 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.604080 B = 8497.830997 C = 9882.254316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.308 6.308 3 C 0.183 3.817 4 C -0.223 4.223 5 C -0.173 4.173 6 S 0.247 5.753 7 C -0.377 4.377 8 C 0.592 3.408 9 O -0.574 6.574 10 N -0.718 5.718 11 C 0.157 3.843 12 H 0.062 0.938 13 C -0.151 4.151 14 C -0.094 4.094 15 H 0.078 0.922 16 C -0.098 4.098 17 C -0.125 4.125 18 C 0.152 3.848 19 N -0.616 5.616 20 C -0.355 4.355 21 H 0.055 0.945 22 C -0.078 4.078 23 N -0.944 5.944 24 Si 1.116 2.884 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.277 1.277 28 C 0.158 3.842 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.214 0.786 34 H 0.401 0.599 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.051 0.949 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.045 0.955 43 H -0.004 1.004 44 H 0.251 0.749 45 H -0.006 1.006 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.169 4.257 -16.012 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.220 6.220 3 C 0.121 3.879 4 C -0.255 4.255 5 C -0.311 4.311 6 S 0.512 5.488 7 C -0.497 4.497 8 C 0.382 3.618 9 O -0.456 6.456 10 N -0.369 5.369 11 C 0.052 3.948 12 H 0.081 0.919 13 C -0.209 4.209 14 C -0.114 4.114 15 H 0.097 0.903 16 C -0.135 4.135 17 C -0.164 4.164 18 C 0.026 3.974 19 N -0.340 5.340 20 C -0.484 4.484 21 H 0.073 0.927 22 C -0.274 4.274 23 N -0.586 5.586 24 Si 0.940 3.060 25 H -0.200 1.200 26 H -0.221 1.221 27 H -0.203 1.203 28 C 0.033 3.967 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.198 0.802 33 H 0.231 0.769 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.014 0.986 44 H 0.061 0.939 45 H 0.012 0.988 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.887 4.878 -15.093 22.450 hybrid contribution -2.657 -1.442 -0.238 3.032 sum -18.544 3.435 -15.332 24.305 Atomic orbital electron populations 1.23492 0.75922 1.05672 1.02993 1.86287 1.23638 1.25291 1.86820 1.18742 0.90306 0.86455 0.92365 1.20258 1.03614 0.89573 1.12100 1.25577 0.97893 1.05356 1.02255 1.83146 1.04824 0.92777 1.68011 1.22836 0.95734 0.99952 1.31140 1.15894 0.82178 0.87838 0.75866 1.90804 1.80264 1.22006 1.52572 1.45938 1.05159 1.10315 1.75536 1.20872 0.87195 0.89113 0.97645 0.91946 1.22117 1.01849 1.02388 0.94563 1.21738 0.94147 0.99191 0.96326 0.90336 1.21450 0.93938 0.96355 1.01794 1.21846 0.97719 1.00470 0.96325 1.20780 0.91446 0.90260 0.94901 1.44353 1.08060 1.14473 1.67095 1.20265 1.26459 0.86618 1.15075 0.92738 1.27255 1.00755 1.07406 0.91956 1.70901 1.45846 1.04055 1.37832 0.82855 0.75975 0.71167 0.76001 1.19995 1.22082 1.20278 1.20917 0.87100 0.96591 0.92102 0.90523 0.87059 0.90993 0.80194 0.76884 0.76314 0.89745 0.93516 0.91159 0.93060 0.88956 0.90579 0.92336 0.93691 0.98621 0.93871 0.98811 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.94 113.37 1.13 1.32 16 2 O -0.31 -8.42 9.36 -74.32 -0.70 -9.11 16 3 C 0.18 4.64 6.70 21.99 0.15 4.79 16 4 C -0.22 -3.58 9.17 21.17 0.19 -3.38 16 5 C -0.17 -2.30 10.90 66.77 0.73 -1.57 16 6 S 0.25 4.73 22.00 -56.49 -1.24 3.49 16 7 C -0.38 -10.68 6.28 22.90 0.14 -10.54 16 8 C 0.59 20.37 7.56 85.10 0.64 21.02 16 9 O -0.57 -23.98 15.50 12.15 0.19 -23.79 16 10 N -0.72 -22.10 4.46 -451.37 -2.01 -24.12 16 11 C 0.16 4.87 2.16 44.99 0.10 4.97 16 12 H 0.06 2.26 7.58 -2.38 -0.02 2.25 16 13 C -0.15 -3.84 9.14 71.98 0.66 -3.18 16 14 C -0.09 -3.14 1.97 -10.72 -0.02 -3.16 16 15 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 16 C -0.10 -3.08 4.86 30.62 0.15 -2.93 16 17 C -0.12 -4.55 6.06 30.53 0.19 -4.36 16 18 C 0.15 7.36 4.66 86.22 0.40 7.76 16 19 N -0.62 -31.61 2.86 -699.93 -2.00 -33.61 16 20 C -0.35 -20.01 9.49 84.03 0.80 -19.21 16 21 H 0.05 3.02 7.94 -2.91 -0.02 3.00 16 22 C -0.08 -4.48 4.69 84.86 0.40 -4.08 16 23 N -0.94 -58.78 12.40 21.65 0.27 -58.51 16 24 Si 1.12 50.86 29.99 68.60 2.06 52.92 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.16 6.91 5.56 86.36 0.48 7.39 16 29 H 0.08 0.75 7.89 -2.39 -0.02 0.74 16 30 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.07 0.79 7.87 -2.39 -0.02 0.77 16 32 H 0.18 1.65 6.99 -2.91 -0.02 1.63 16 33 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 34 H 0.40 11.06 7.39 -92.71 -0.68 10.37 16 35 H 0.08 1.86 6.40 -2.39 -0.02 1.85 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.29 6.36 -2.39 -0.02 2.27 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 42 H 0.04 2.46 6.30 -2.39 -0.02 2.44 16 43 H 0.00 -0.21 7.87 -2.39 -0.02 -0.23 16 44 H 0.25 16.13 6.71 -92.70 -0.62 15.51 16 45 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 46 H 0.05 2.09 7.44 -2.39 -0.02 2.07 16 Total: -1.00 -79.67 376.98 3.14 -76.53 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.45 Total: 21.38 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.13 Total: -5.17 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -3.74 Total: -116.24 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.51 Total: -32.90 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 2.06 Total: 52.92 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.24 Total: 3.49 kcal Total: -79.67 3.14 -76.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025601306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.783 kcal (2) G-P(sol) polarization free energy of solvation -79.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds