Wall clock time and date at job start Tue Mar 31 2020 21:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47074 * 216.68706 * 3 2 1 5 5 C 1.53005 * 109.47049 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46637 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00282 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99319 * 180.02562 * 6 5 4 9 9 C 1.47061 * 136.06238 * 359.62372 * 8 6 5 10 10 C 1.53751 * 87.88885 * 152.96899 * 9 8 6 11 11 N 1.46507 * 114.26833 * 139.79511 * 10 9 8 12 12 C 1.46498 * 119.99752 * 332.11315 * 11 10 9 13 13 C 1.53003 * 109.47163 * 89.99898 * 12 11 10 14 14 C 1.34771 * 120.00184 * 152.11483 * 11 10 9 15 15 O 1.21288 * 119.99867 * 5.37042 * 14 11 10 16 16 C 1.50701 * 120.00095 * 185.37272 * 14 11 10 17 17 S 1.80997 * 109.47020 * 179.97438 * 16 14 11 18 18 C 1.76202 * 99.99997 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99591 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99976 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46737 * 59.99976 * 22 20 18 24 24 H 1.48492 * 109.47446 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47243 * 300.00215 * 22 20 18 26 26 C 1.47069 * 136.05384 * 180.02562 * 8 6 5 27 27 H 4.44645 * 5.63336 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47652 * 96.68667 * 3 2 1 29 29 H 1.09008 * 109.46988 * 336.68226 * 3 2 1 30 30 H 1.08998 * 109.47156 * 300.00056 * 4 3 2 31 31 H 1.09000 * 109.47207 * 59.99842 * 4 3 2 32 32 H 1.08997 * 109.46696 * 299.99707 * 5 4 3 33 33 H 1.09000 * 109.47108 * 59.99950 * 5 4 3 34 34 H 1.09004 * 113.46756 * 267.70029 * 9 8 6 35 35 H 1.08999 * 113.46687 * 38.13386 * 9 8 6 36 36 H 1.09006 * 114.39552 * 272.67713 * 10 9 8 37 37 H 1.08995 * 109.47276 * 209.99885 * 12 11 10 38 38 H 1.09004 * 109.47585 * 330.00352 * 12 11 10 39 39 H 1.08995 * 109.47014 * 300.00148 * 13 12 11 40 40 H 1.09008 * 109.46942 * 59.99955 * 13 12 11 41 41 H 1.08992 * 109.47089 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.46659 * 299.99853 * 16 14 11 43 43 H 1.08999 * 109.46912 * 59.99788 * 16 14 11 44 44 H 0.96997 * 119.99598 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.46807 * 321.85781 * 26 8 6 46 46 H 1.09002 * 113.46947 * 92.23816 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1554 1.1577 0.8618 5 6 4.6855 1.1580 0.8624 6 6 5.1872 2.2980 1.7107 7 8 4.3987 3.0376 2.2603 8 7 6.5122 2.4961 1.8577 9 6 7.7401 1.8431 1.3796 10 6 8.4467 3.2022 1.5121 11 7 9.8079 3.1234 2.0482 12 6 10.1792 2.0269 2.9459 13 6 10.7098 0.8513 2.1228 14 6 10.7183 4.0598 1.7156 15 8 10.3866 5.0196 1.0525 16 6 12.1486 3.9142 2.1676 17 16 13.1174 5.3197 1.5661 18 6 14.6994 4.9035 2.2210 19 1 14.8239 3.9993 2.7982 20 6 15.7854 5.7377 1.9949 21 7 15.6335 6.8401 1.2918 22 14 17.4627 5.2961 2.6886 23 1 17.8961 3.9861 2.1395 24 1 18.4465 6.3414 2.3085 25 1 17.3790 5.2091 4.1687 26 6 7.3664 3.4563 2.5728 27 1 -1.0501 -0.0002 -0.0004 28 1 3.0093 0.1205 -1.0206 29 1 3.0097 -0.9430 0.4068 30 1 2.7917 2.1013 0.4552 31 1 2.7921 1.0379 1.8825 32 1 5.0488 0.2144 1.2694 33 1 5.0491 1.2776 -0.1582 34 1 8.1237 1.0860 2.0636 35 1 7.6703 1.4867 0.3519 36 1 8.3668 3.8389 0.6310 37 1 10.9529 2.3669 3.6342 38 1 9.3038 1.7082 3.5119 39 1 9.9362 0.5113 1.4344 40 1 11.5853 1.1700 1.5567 41 1 10.9866 0.0357 2.7906 42 1 12.1844 3.8872 3.2566 43 1 12.5637 2.9892 1.7673 44 1 16.3926 7.4228 1.1336 45 1 6.9782 4.4748 2.5617 46 1 7.6507 3.1247 3.5714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079341777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:16 Heat of formation + Delta-G solvation = 16.562560 kcal Electronic energy + Delta-G solvation = -25836.758490 eV Core-core repulsion = 22048.745693 eV Total energy + Delta-G solvation = -3788.012797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13311 -39.45415 -38.06314 -35.95488 -35.41913 -32.72758 -32.46074 -31.05954 -30.05269 -28.98888 -27.55136 -26.27586 -25.51940 -23.76437 -23.00222 -21.69808 -19.38919 -19.22289 -18.51411 -17.76278 -17.42979 -17.14172 -16.48645 -16.23909 -15.85238 -15.26081 -14.88104 -14.82387 -14.45196 -14.30767 -14.06405 -13.77342 -13.51223 -13.43931 -13.18261 -12.96063 -12.86861 -12.77715 -12.56327 -12.43950 -12.09586 -11.99638 -11.73312 -11.43117 -11.33684 -11.15457 -11.07741 -11.05150 -10.80073 -10.61816 -10.47808 -10.17323 -9.85622 -9.49216 -9.08961 -9.06027 -8.71987 -8.27632 -6.54357 -6.24664 -3.95981 2.24910 2.30189 2.47573 2.47926 2.86618 2.93454 3.20943 3.22860 3.26788 3.52697 3.90764 4.03078 4.06639 4.17088 4.52951 4.53872 4.62272 4.65006 4.72774 4.85465 4.95271 4.99492 5.03626 5.04541 5.08049 5.11060 5.12923 5.17478 5.20967 5.42009 5.44917 5.49450 5.52102 5.65823 5.66796 5.67968 5.79537 5.85908 5.87576 5.96074 6.15110 6.48615 7.25404 7.30521 7.42534 7.55956 7.82694 8.31526 8.41455 9.20553 10.82637 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.001741 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.648383 B =16078.164548 C =16398.966256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.013 4.013 4 C -0.101 4.101 5 C -0.134 4.134 6 C 0.545 3.455 7 O -0.537 6.537 8 N -0.646 5.646 9 C 0.086 3.914 10 C 0.120 3.880 11 N -0.610 5.610 12 C 0.101 3.899 13 C -0.177 4.177 14 C 0.538 3.462 15 O -0.509 6.509 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.075 3.925 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.087 3.913 27 H 0.216 0.784 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.269 0.731 45 H 0.085 0.915 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.686 -18.447 0.209 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.187 4.187 3 C -0.050 4.050 4 C -0.139 4.139 5 C -0.173 4.173 6 C 0.335 3.665 7 O -0.413 6.413 8 N -0.382 5.382 9 C -0.038 4.038 10 C 0.014 3.986 11 N -0.345 5.345 12 C -0.022 4.022 13 C -0.235 4.235 14 C 0.326 3.674 15 O -0.382 6.382 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.744 3.256 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.037 4.037 27 H 0.233 0.767 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.151 0.849 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.745 -16.472 -0.588 27.286 hybrid contribution 1.349 -1.554 1.319 2.444 sum -20.396 -18.027 0.731 27.230 Atomic orbital electron populations 1.24941 0.96039 1.00775 1.00963 1.23073 0.94564 1.00553 1.00490 1.18753 0.84952 0.99773 1.01495 1.21305 0.92722 0.98653 1.01171 1.21624 0.97284 0.97468 1.00960 1.20224 0.79210 0.85814 0.81275 1.90739 1.53652 1.47776 1.49149 1.49370 1.03669 1.33587 1.51595 1.23675 0.81907 0.96900 1.01343 1.22737 0.80738 0.97004 0.98139 1.47889 1.09855 1.27441 1.49350 1.21591 1.00983 0.87183 0.92394 1.22329 1.02230 0.97996 1.00935 1.20411 0.86799 0.81242 0.78957 1.90717 1.80289 1.29534 1.37708 1.23601 0.94472 1.07490 1.04517 1.85432 1.03357 1.24399 1.70266 1.22802 0.94359 1.11623 1.39664 0.90970 1.24983 0.99116 0.94467 0.94912 1.70006 1.31773 1.11605 1.36825 0.86235 0.81748 0.78260 0.79325 1.19937 1.20805 1.19928 1.23532 0.87750 0.95267 0.97164 0.76667 0.89350 0.89435 0.90567 0.90694 0.88616 0.88459 0.88692 0.89532 0.84927 0.89422 0.90549 0.92285 0.91502 0.91386 0.89180 0.88981 0.92097 0.89678 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.56 19.25 29.55 0.57 -0.99 16 2 C -0.19 -1.51 13.34 -37.13 -0.50 -2.01 16 3 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.73 4.46 -26.73 -0.12 -0.85 16 5 C -0.13 -0.83 5.53 -27.88 -0.15 -0.99 16 6 C 0.54 5.74 8.08 -10.98 -0.09 5.65 16 7 O -0.54 -7.98 16.76 5.56 0.09 -7.88 16 8 N -0.65 -6.12 3.69 -185.10 -0.68 -6.80 16 9 C 0.09 0.60 6.97 -8.39 -0.06 0.54 16 10 C 0.12 1.24 4.49 -67.67 -0.30 0.94 16 11 N -0.61 -7.23 2.70 -165.72 -0.45 -7.68 16 12 C 0.10 0.86 5.05 -4.04 -0.02 0.84 16 13 C -0.18 -1.31 9.93 37.16 0.37 -0.94 16 14 C 0.54 9.25 7.68 -10.99 -0.08 9.17 16 15 O -0.51 -10.85 15.46 5.55 0.09 -10.77 16 16 C -0.15 -2.82 4.84 36.01 0.17 -2.65 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -14.78 9.50 30.94 0.29 -14.48 16 19 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 21 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 22 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.09 0.90 8.19 -8.51 -0.07 0.83 16 27 H 0.22 0.90 7.80 -54.08 -0.42 0.48 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.52 5.33 -51.93 -0.28 0.24 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.13 1.63 7.44 -51.93 -0.39 1.24 16 37 H 0.09 0.79 6.48 -51.93 -0.34 0.45 16 38 H 0.08 0.48 6.22 -51.93 -0.32 0.16 16 39 H 0.06 0.37 6.44 -51.93 -0.33 0.03 16 40 H 0.07 0.64 6.92 -51.92 -0.36 0.28 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 1.56 7.24 -51.92 -0.38 1.18 16 43 H 0.09 1.59 6.92 -51.92 -0.36 1.23 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 0.80 7.37 -51.93 -0.38 0.42 16 LS Contribution 399.26 15.07 6.02 6.02 Total: -1.00 -36.63 399.26 -8.59 -45.22 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.90 Total: -2.04 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.25 Total: -3.20 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.40 Total: -39.38 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.63 -8.59 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.784 kcal (2) G-P(sol) polarization free energy of solvation -36.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds