Wall clock time and date at job start Tue Mar 31 2020 21:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53006 * 109.47074 * 216.68706 * 3 2 1 5 5 C 1.53005 * 109.47049 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.46637 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00282 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99319 * 180.02562 * 6 5 4 9 9 C 1.47061 * 136.06238 * 359.62372 * 8 6 5 10 10 C 1.53751 * 87.88885 * 152.96899 * 9 8 6 11 11 N 1.46507 * 114.26833 * 139.79511 * 10 9 8 12 12 C 1.46498 * 119.99752 * 332.11315 * 11 10 9 13 13 C 1.53003 * 109.47163 * 89.99898 * 12 11 10 14 14 C 1.34771 * 120.00184 * 152.11483 * 11 10 9 15 15 O 1.21288 * 119.99867 * 5.37042 * 14 11 10 16 16 C 1.50701 * 120.00095 * 185.37272 * 14 11 10 17 17 S 1.80997 * 109.47020 * 179.97438 * 16 14 11 18 18 C 1.76202 * 99.99997 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99591 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31635 * 119.99976 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46737 * 59.99976 * 22 20 18 24 24 H 1.48492 * 109.47446 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47243 * 300.00215 * 22 20 18 26 26 C 1.47069 * 136.05384 * 180.02562 * 8 6 5 27 27 H 4.44645 * 5.63336 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47652 * 96.68667 * 3 2 1 29 29 H 1.09008 * 109.46988 * 336.68226 * 3 2 1 30 30 H 1.08998 * 109.47156 * 300.00056 * 4 3 2 31 31 H 1.09000 * 109.47207 * 59.99842 * 4 3 2 32 32 H 1.08997 * 109.46696 * 299.99707 * 5 4 3 33 33 H 1.09000 * 109.47108 * 59.99950 * 5 4 3 34 34 H 1.09004 * 113.46756 * 267.70029 * 9 8 6 35 35 H 1.08999 * 113.46687 * 38.13386 * 9 8 6 36 36 H 1.09006 * 114.39552 * 272.67713 * 10 9 8 37 37 H 1.08995 * 109.47276 * 209.99885 * 12 11 10 38 38 H 1.09004 * 109.47585 * 330.00352 * 12 11 10 39 39 H 1.08995 * 109.47014 * 300.00148 * 13 12 11 40 40 H 1.09008 * 109.46942 * 59.99955 * 13 12 11 41 41 H 1.08992 * 109.47089 * 179.97438 * 13 12 11 42 42 H 1.08995 * 109.46659 * 299.99853 * 16 14 11 43 43 H 1.08999 * 109.46912 * 59.99788 * 16 14 11 44 44 H 0.96997 * 119.99598 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.46807 * 321.85781 * 26 8 6 46 46 H 1.09002 * 113.46947 * 92.23816 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1554 1.1577 0.8618 5 6 4.6855 1.1580 0.8624 6 6 5.1872 2.2980 1.7107 7 8 4.3987 3.0376 2.2603 8 7 6.5122 2.4961 1.8577 9 6 7.7401 1.8431 1.3796 10 6 8.4467 3.2022 1.5121 11 7 9.8079 3.1234 2.0482 12 6 10.1792 2.0269 2.9459 13 6 10.7098 0.8513 2.1228 14 6 10.7183 4.0598 1.7156 15 8 10.3866 5.0196 1.0525 16 6 12.1486 3.9142 2.1676 17 16 13.1174 5.3197 1.5661 18 6 14.6994 4.9035 2.2210 19 1 14.8239 3.9993 2.7982 20 6 15.7854 5.7377 1.9949 21 7 15.6335 6.8401 1.2918 22 14 17.4627 5.2961 2.6886 23 1 17.8961 3.9861 2.1395 24 1 18.4465 6.3414 2.3085 25 1 17.3790 5.2091 4.1687 26 6 7.3664 3.4563 2.5728 27 1 -1.0501 -0.0002 -0.0004 28 1 3.0093 0.1205 -1.0206 29 1 3.0097 -0.9430 0.4068 30 1 2.7917 2.1013 0.4552 31 1 2.7921 1.0379 1.8825 32 1 5.0488 0.2144 1.2694 33 1 5.0491 1.2776 -0.1582 34 1 8.1237 1.0860 2.0636 35 1 7.6703 1.4867 0.3519 36 1 8.3668 3.8389 0.6310 37 1 10.9529 2.3669 3.6342 38 1 9.3038 1.7082 3.5119 39 1 9.9362 0.5113 1.4344 40 1 11.5853 1.1700 1.5567 41 1 10.9866 0.0357 2.7906 42 1 12.1844 3.8872 3.2566 43 1 12.5637 2.9892 1.7673 44 1 16.3926 7.4228 1.1336 45 1 6.9782 4.4748 2.5617 46 1 7.6507 3.1247 3.5714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079341777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:16 Heat of formation + Delta-G solvation = -7.488709 kcal Electronic energy + Delta-G solvation = -25837.801432 eV Core-core repulsion = 22048.745693 eV Total energy + Delta-G solvation = -3789.055738 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00972 -40.51942 -39.08479 -36.56377 -36.39421 -34.55955 -33.30932 -31.88408 -31.17136 -29.97744 -28.26495 -27.61363 -26.98091 -24.48573 -23.80327 -22.50911 -20.42976 -20.03207 -19.54616 -19.05679 -18.45724 -17.98756 -17.47861 -16.95589 -16.85687 -16.69284 -16.45583 -16.14191 -15.39406 -15.04966 -14.92513 -14.90097 -14.58100 -14.38225 -14.18781 -13.98147 -13.59552 -13.55170 -13.45036 -13.37639 -13.19938 -13.13461 -12.85198 -12.61521 -12.52768 -12.48215 -12.07310 -11.96294 -11.89217 -11.72045 -11.21741 -11.10244 -11.04545 -10.96815 -10.82419 -10.23390 -9.89003 -9.70633 -8.64466 -8.32132 -6.10232 1.22705 1.42397 1.45598 1.53370 1.53587 1.54169 1.67992 1.90135 1.92840 2.21948 2.30298 3.02247 3.23669 3.27586 3.35848 3.53675 3.71025 3.78948 4.02259 4.06075 4.10125 4.10629 4.23758 4.27709 4.41837 4.44059 4.46278 4.53101 4.58262 4.63420 4.65228 4.66287 4.77207 4.82642 4.84838 5.00490 5.10706 5.18494 5.21644 5.31864 5.43961 5.47315 5.58200 6.21308 6.23624 6.63586 6.72441 7.04270 7.09294 7.12545 8.76672 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035227 B = 0.001741 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.648383 B =16078.164548 C =16398.966256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C -0.009 4.009 4 C -0.096 4.096 5 C -0.122 4.122 6 C 0.536 3.464 7 O -0.592 6.592 8 N -0.645 5.645 9 C 0.106 3.894 10 C 0.110 3.890 11 N -0.591 5.591 12 C 0.091 3.909 13 C -0.173 4.173 14 C 0.537 3.463 15 O -0.563 6.563 16 C -0.122 4.122 17 S -0.156 6.156 18 C -0.544 4.544 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.996 3.004 23 H -0.261 1.261 24 H -0.281 1.281 25 H -0.262 1.262 26 C 0.082 3.918 27 H 0.238 0.762 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.341 -22.707 0.971 30.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.216 4.216 3 C -0.046 4.046 4 C -0.134 4.134 5 C -0.161 4.161 6 C 0.329 3.671 7 O -0.473 6.473 8 N -0.381 5.381 9 C -0.017 4.017 10 C 0.004 3.996 11 N -0.324 5.324 12 C -0.030 4.030 13 C -0.231 4.231 14 C 0.325 3.675 15 O -0.440 6.440 16 C -0.273 4.273 17 S 0.071 5.929 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.818 3.182 23 H -0.185 1.185 24 H -0.207 1.207 25 H -0.187 1.187 26 C -0.042 4.042 27 H 0.254 0.746 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.126 0.874 43 H 0.130 0.870 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.408 -20.809 0.188 29.855 hybrid contribution 1.093 -0.269 1.126 1.592 sum -20.315 -21.077 1.314 29.303 Atomic orbital electron populations 1.25720 0.97159 1.00433 1.00675 1.23859 0.95902 1.00973 1.00891 1.18847 0.83639 0.99867 1.02209 1.21199 0.93762 0.98232 1.00206 1.21668 0.96082 0.96840 1.01503 1.21100 0.78885 0.86188 0.80935 1.90718 1.55051 1.49991 1.51499 1.49423 1.04096 1.33419 1.51143 1.23755 0.79220 0.94885 1.03800 1.22755 0.79803 0.99713 0.97321 1.47780 1.09377 1.26685 1.48576 1.21976 1.02569 0.86343 0.92125 1.22309 1.01748 0.97812 1.01266 1.20163 0.86932 0.81684 0.78708 1.90703 1.80950 1.31991 1.40396 1.23413 0.94458 1.04213 1.05229 1.85633 1.05574 1.29906 1.71808 1.23155 0.94546 1.11993 1.39480 0.89761 1.26104 1.03703 0.94166 0.95072 1.70184 1.33047 1.13039 1.38566 0.85033 0.75925 0.78308 0.78924 1.18506 1.20664 1.18663 1.23546 0.87945 0.94577 0.98144 0.74562 0.87608 0.87199 0.93119 0.92642 0.85192 0.85926 0.85703 0.86704 0.87431 0.89788 0.87187 0.90465 0.93914 0.89089 0.87377 0.87042 0.92091 0.92437 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.16 19.25 74.32 1.43 -1.73 16 2 C -0.22 -3.29 13.34 31.12 0.42 -2.88 16 3 C -0.01 -0.09 5.70 28.79 0.16 0.08 16 4 C -0.10 -1.28 4.46 30.60 0.14 -1.14 16 5 C -0.12 -1.14 5.53 29.85 0.17 -0.97 16 6 C 0.54 10.56 8.08 87.66 0.71 11.27 16 7 O -0.59 -18.00 16.76 -3.02 -0.05 -18.05 16 8 N -0.65 -10.81 3.69 -857.91 -3.16 -13.97 16 9 C 0.11 1.04 6.97 83.26 0.58 1.62 16 10 C 0.11 2.12 4.49 45.55 0.20 2.33 16 11 N -0.59 -12.99 2.70 -796.62 -2.15 -15.14 16 12 C 0.09 1.20 5.05 86.38 0.44 1.64 16 13 C -0.17 -1.82 9.93 71.98 0.71 -1.10 16 14 C 0.54 18.53 7.68 87.66 0.67 19.20 16 15 O -0.56 -25.08 15.46 -3.05 -0.05 -25.13 16 16 C -0.12 -4.55 4.84 71.24 0.34 -4.20 16 17 S -0.16 -8.46 20.57 -56.49 -1.16 -9.62 16 18 C -0.54 -30.18 9.50 67.95 0.65 -29.54 16 19 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 20 C 0.01 0.80 5.49 84.86 0.47 1.26 16 21 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 22 Si 1.00 42.52 29.55 68.60 2.03 44.55 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C 0.08 1.63 8.19 83.18 0.68 2.31 16 27 H 0.24 1.76 7.80 -4.41 -0.03 1.72 16 28 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 32 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.13 0.58 5.33 -2.38 -0.01 0.56 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.11 2.70 7.44 -2.38 -0.02 2.68 16 37 H 0.08 1.23 6.48 -2.39 -0.02 1.22 16 38 H 0.11 0.80 6.22 -2.38 -0.01 0.79 16 39 H 0.08 0.54 6.44 -2.39 -0.02 0.53 16 40 H 0.04 0.68 6.92 -2.38 -0.02 0.66 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.11 3.61 7.24 -2.40 -0.02 3.60 16 43 H 0.11 3.71 6.92 -2.40 -0.02 3.69 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.10 1.69 7.37 -2.39 -0.02 1.68 16 Total: -1.00 -87.14 399.26 4.48 -82.66 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.97 Total: 11.62 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 7.77 Total: -1.85 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -5.03 Total: -84.18 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.10 Total: -43.18 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -87.14 4.48 -82.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.171 kcal (2) G-P(sol) polarization free energy of solvation -87.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds