Wall clock time and date at job start Tue Mar 31 2020 21:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.47171 * 2 1 4 4 C 1.34781 * 120.00147 * 270.00331 * 3 2 1 5 5 O 1.21278 * 119.99783 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.99860 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.76200 * 99.99738 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00150 * 0.02562 * 8 7 6 10 10 C 1.38800 * 119.99994 * 179.97438 * 8 7 6 11 11 N 1.31623 * 119.99828 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00164 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47071 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47245 * 120.00149 * 12 10 8 15 15 H 1.48499 * 109.47026 * 240.00521 * 12 10 8 16 16 C 1.46503 * 120.00061 * 89.99910 * 3 2 1 17 17 C 1.53950 * 113.74146 * 141.26191 * 16 3 2 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 3 19 19 C 1.34776 * 134.45584 * 204.64698 * 18 17 16 20 20 O 1.21613 * 119.99857 * 179.86704 * 19 18 17 21 21 C 1.43199 * 120.00183 * 359.86545 * 19 18 17 22 22 C 6.93525 * 121.38046 * 352.96839 * 2 1 3 23 23 C 8.07000 * 127.81854 * 349.08786 * 2 1 3 24 24 C 1.52998 * 109.46995 * 89.53136 * 23 22 21 25 25 C 1.52998 * 109.47115 * 209.53179 * 23 22 21 26 26 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 27 27 H 1.09000 * 109.47125 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46980 * 299.99890 * 1 2 3 30 30 H 1.09003 * 109.46980 * 240.00110 * 2 1 3 31 31 H 1.09000 * 109.47125 * 120.00143 * 2 1 3 32 32 H 1.09004 * 109.47346 * 300.00210 * 6 4 3 33 33 H 1.09003 * 109.47069 * 59.99963 * 6 4 3 34 34 H 0.97000 * 120.00297 * 180.02562 * 11 10 8 35 35 H 1.09002 * 112.94232 * 9.66866 * 16 3 2 36 36 H 1.08999 * 113.76704 * 205.15172 * 17 16 3 37 37 H 1.09002 * 113.76463 * 336.53966 * 17 16 3 38 38 H 1.09002 * 109.46947 * 329.53270 * 23 22 21 39 39 H 1.08993 * 109.47111 * 59.99979 * 24 23 22 40 40 H 1.09006 * 109.47256 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.47585 * 300.00070 * 24 23 22 42 42 H 1.08999 * 109.47428 * 60.00425 * 25 23 22 43 43 H 1.09001 * 109.46865 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.47287 * 299.99883 * 25 23 22 45 45 H 1.08999 * 113.77186 * 221.15323 * 26 18 17 46 46 H 1.09004 * 113.76624 * 89.74800 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1601 -1.1671 6 6 1.9923 1.3060 -2.4723 7 16 2.3849 2.4148 -3.8480 8 6 2.0127 1.3583 -5.2082 9 1 1.6574 0.3540 -5.0305 10 6 2.1751 1.8171 -6.5081 11 7 2.6076 3.0412 -6.7246 12 14 1.7799 0.6974 -7.9501 13 1 1.3144 -0.6182 -7.4422 14 1 0.7120 1.3140 -8.7775 15 1 2.9986 0.5062 -8.7768 16 6 2.2625 2.0718 1.2687 17 6 3.5145 2.9675 1.2559 18 7 2.6096 4.0506 0.8171 19 6 2.7744 5.1975 0.1286 20 8 1.8186 5.9156 -0.0943 21 6 4.0750 5.5705 -0.3404 22 6 5.1414 5.8763 -0.7248 23 6 6.4783 6.2597 -1.2068 24 6 6.4907 6.2510 -2.7367 25 6 6.8193 7.6631 -0.7020 26 6 1.4533 3.3711 1.4329 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.6228 0.4187 -2.5299 33 1 0.9444 1.0114 -2.5302 34 1 2.7208 3.3621 -7.6330 35 1 2.2066 1.4079 2.1315 36 1 3.9484 3.1302 2.2425 37 1 4.2528 2.6798 0.5074 38 1 7.2164 5.5499 -0.8334 39 1 5.7525 6.9607 -3.1101 40 1 7.4808 6.5344 -3.0937 41 1 6.2477 5.2511 -3.0964 42 1 6.8105 7.6694 0.3879 43 1 7.8095 7.9468 -1.0586 44 1 6.0811 8.3729 -1.0754 45 1 0.5489 3.4052 0.8255 46 1 1.2805 3.6526 2.4717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079341954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:19 Heat of formation + Delta-G solvation = 39.680384 kcal Electronic energy + Delta-G solvation = -27576.458268 eV Core-core repulsion = 23789.447935 eV Total energy + Delta-G solvation = -3787.010333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97733 -38.54701 -36.96209 -36.15831 -35.48899 -32.41906 -31.76656 -30.50090 -29.56885 -28.15482 -27.12988 -26.31777 -25.48720 -23.85651 -23.33243 -22.19282 -20.41546 -18.56722 -17.87094 -17.52807 -16.83695 -16.38971 -16.12053 -15.58365 -15.32543 -14.80367 -14.74048 -14.51598 -14.03991 -13.85828 -13.55722 -13.44567 -13.26127 -13.06677 -12.92328 -12.68295 -12.50235 -12.19732 -12.06073 -11.90361 -11.88308 -11.69742 -11.37957 -11.28729 -11.23862 -11.17288 -11.06072 -11.00009 -10.75131 -10.01668 -9.92227 -9.79292 -9.65575 -9.34880 -9.06341 -8.64289 -8.19625 -8.14856 -6.47458 -6.20399 -3.90441 2.08831 2.58620 2.81383 3.02323 3.19303 3.21387 3.24594 3.30538 3.57216 3.99312 4.20972 4.24594 4.30515 4.67269 4.85001 4.87857 5.01742 5.11298 5.11793 5.14602 5.17362 5.19720 5.27308 5.31489 5.46061 5.48025 5.50773 5.63326 5.64068 5.72635 5.75542 5.76541 5.80685 5.91723 5.91767 5.95971 6.04172 6.21431 6.21538 6.27540 6.43819 6.66294 7.49094 7.60458 7.68682 7.93256 8.36050 8.56106 8.60819 9.24851 10.86903 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.004630 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.354691 B = 6045.885082 C = 8882.668104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.110 3.890 3 N -0.608 5.608 4 C 0.529 3.471 5 O -0.491 6.491 6 C -0.149 4.149 7 S -0.058 6.058 8 C -0.535 4.535 9 H 0.071 0.929 10 C 0.074 3.926 11 N -0.866 5.866 12 Si 0.917 3.083 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C 0.116 3.884 17 C 0.098 3.902 18 N -0.606 5.606 19 C 0.687 3.313 20 O -0.538 6.538 21 C -0.189 4.189 22 C -0.098 4.098 23 C 0.016 3.984 24 C -0.147 4.147 25 C -0.144 4.144 26 C 0.097 3.903 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.267 0.733 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.895 -3.853 19.535 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.013 4.013 3 N -0.344 5.344 4 C 0.317 3.683 5 O -0.362 6.362 6 C -0.300 4.300 7 S 0.169 5.831 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.743 3.257 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C 0.010 3.990 17 C -0.027 4.027 18 N -0.340 5.340 19 C 0.479 3.521 20 O -0.417 6.417 21 C -0.192 4.192 22 C -0.101 4.101 23 C -0.002 4.002 24 C -0.204 4.204 25 C -0.202 4.202 26 C -0.027 4.027 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.048 -1.441 19.141 19.848 hybrid contribution -0.840 -2.212 -1.046 2.588 sum 4.208 -3.653 18.095 18.933 Atomic orbital electron populations 1.22242 0.95917 1.02195 1.02813 1.21556 0.94503 0.81940 1.03291 1.47828 1.68003 1.14197 1.04390 1.20366 0.76896 0.86651 0.84376 1.90741 1.42453 1.16693 1.86347 1.23590 1.04551 1.04402 0.97418 1.85488 1.86671 1.17735 0.93210 1.22895 1.51698 1.01415 0.92305 0.91032 1.24975 0.94702 0.95486 0.98334 1.70029 1.43043 1.15602 1.21506 0.86151 0.78186 0.80115 0.81247 1.19632 1.20570 1.20575 1.22513 0.95729 0.93268 0.87447 1.23502 0.95117 0.84166 0.99875 1.49181 1.10979 1.20252 1.53573 1.13744 0.84026 0.78283 0.76087 1.90802 1.40764 1.52261 1.57851 1.20510 0.93446 1.01932 1.03313 1.22434 0.94236 0.98124 0.95264 1.18388 0.87542 0.97700 0.96618 1.21840 1.02200 1.03918 0.92492 1.21839 1.01920 0.95230 1.01177 1.23577 0.92449 0.88465 0.98174 0.91963 0.91598 0.92398 0.89857 0.90489 0.89588 0.89516 0.92275 0.86905 0.89241 0.89517 0.88795 0.91886 0.91666 0.91231 0.92451 0.91507 0.91994 0.89829 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.56 10.24 37.16 0.38 -1.18 16 2 C 0.11 1.02 5.96 -4.04 -0.02 0.99 16 3 N -0.61 -7.61 2.73 -167.90 -0.46 -8.07 16 4 C 0.53 9.58 7.18 -10.98 -0.08 9.50 16 5 O -0.49 -10.55 9.45 5.56 0.05 -10.50 16 6 C -0.15 -3.00 4.71 36.00 0.17 -2.83 16 7 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 8 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 9 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 10 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 11 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 12 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.12 1.16 4.72 -70.14 -0.33 0.83 16 17 C 0.10 1.13 7.53 -2.84 -0.02 1.11 16 18 N -0.61 -9.66 2.01 -181.22 -0.36 -10.02 16 19 C 0.69 14.12 5.74 -14.33 -0.08 14.04 16 20 O -0.54 -13.06 17.81 5.27 0.09 -12.97 16 21 C -0.19 -3.70 12.94 -38.84 -0.50 -4.20 16 22 C -0.10 -1.67 12.56 -37.12 -0.47 -2.14 16 23 C 0.02 0.20 3.30 -93.41 -0.31 -0.11 16 24 C -0.15 -1.98 9.15 37.16 0.34 -1.64 16 25 C -0.14 -1.48 9.15 37.16 0.34 -1.14 16 26 C 0.10 1.18 8.28 -2.96 -0.02 1.15 16 27 H 0.06 0.72 7.22 -51.93 -0.38 0.35 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 31 H 0.08 0.48 7.96 -51.93 -0.41 0.07 16 32 H 0.09 1.60 7.40 -51.91 -0.38 1.21 16 33 H 0.09 1.67 7.19 -51.92 -0.37 1.29 16 34 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.11 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.19 7.47 -51.93 -0.39 0.80 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -38.87 398.57 -8.88 -47.75 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.30 Total: -0.63 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.41 Total: 1.38 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.09 Total: -43.79 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.15 Total: -23.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.87 -8.88 -47.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.432 kcal (2) G-P(sol) polarization free energy of solvation -38.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds