Wall clock time and date at job start Tue Mar 31 2020 21:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46491 * 109.47171 * 2 1 4 4 C 1.34781 * 120.00147 * 270.00331 * 3 2 1 5 5 O 1.21278 * 119.99783 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.99860 * 359.97438 * 4 3 2 7 7 S 1.81004 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.76200 * 99.99738 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00150 * 0.02562 * 8 7 6 10 10 C 1.38800 * 119.99994 * 179.97438 * 8 7 6 11 11 N 1.31623 * 119.99828 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00164 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47071 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47245 * 120.00149 * 12 10 8 15 15 H 1.48499 * 109.47026 * 240.00521 * 12 10 8 16 16 C 1.46503 * 120.00061 * 89.99910 * 3 2 1 17 17 C 1.53950 * 113.74146 * 141.26191 * 16 3 2 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 3 19 19 C 1.34776 * 134.45584 * 204.64698 * 18 17 16 20 20 O 1.21613 * 119.99857 * 179.86704 * 19 18 17 21 21 C 1.43199 * 120.00183 * 359.86545 * 19 18 17 22 22 C 6.93525 * 121.38046 * 352.96839 * 2 1 3 23 23 C 8.07000 * 127.81854 * 349.08786 * 2 1 3 24 24 C 1.52998 * 109.46995 * 89.53136 * 23 22 21 25 25 C 1.52998 * 109.47115 * 209.53179 * 23 22 21 26 26 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 27 27 H 1.09000 * 109.47125 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.46919 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46980 * 299.99890 * 1 2 3 30 30 H 1.09003 * 109.46980 * 240.00110 * 2 1 3 31 31 H 1.09000 * 109.47125 * 120.00143 * 2 1 3 32 32 H 1.09004 * 109.47346 * 300.00210 * 6 4 3 33 33 H 1.09003 * 109.47069 * 59.99963 * 6 4 3 34 34 H 0.97000 * 120.00297 * 180.02562 * 11 10 8 35 35 H 1.09002 * 112.94232 * 9.66866 * 16 3 2 36 36 H 1.08999 * 113.76704 * 205.15172 * 17 16 3 37 37 H 1.09002 * 113.76463 * 336.53966 * 17 16 3 38 38 H 1.09002 * 109.46947 * 329.53270 * 23 22 21 39 39 H 1.08993 * 109.47111 * 59.99979 * 24 23 22 40 40 H 1.09006 * 109.47256 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.47585 * 300.00070 * 24 23 22 42 42 H 1.08999 * 109.47428 * 60.00425 * 25 23 22 43 43 H 1.09001 * 109.46865 * 179.97438 * 25 23 22 44 44 H 1.09002 * 109.47287 * 299.99883 * 25 23 22 45 45 H 1.08999 * 113.77186 * 221.15323 * 26 18 17 46 46 H 1.09004 * 113.76624 * 89.74800 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6468 3.1601 -1.1671 6 6 1.9923 1.3060 -2.4723 7 16 2.3849 2.4148 -3.8480 8 6 2.0127 1.3583 -5.2082 9 1 1.6574 0.3540 -5.0305 10 6 2.1751 1.8171 -6.5081 11 7 2.6076 3.0412 -6.7246 12 14 1.7799 0.6974 -7.9501 13 1 1.3144 -0.6182 -7.4422 14 1 0.7120 1.3140 -8.7775 15 1 2.9986 0.5062 -8.7768 16 6 2.2625 2.0718 1.2687 17 6 3.5145 2.9675 1.2559 18 7 2.6096 4.0506 0.8171 19 6 2.7744 5.1975 0.1286 20 8 1.8186 5.9156 -0.0943 21 6 4.0750 5.5705 -0.3404 22 6 5.1414 5.8763 -0.7248 23 6 6.4783 6.2597 -1.2068 24 6 6.4907 6.2510 -2.7367 25 6 6.8193 7.6631 -0.7020 26 6 1.4533 3.3711 1.4329 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.6228 0.4187 -2.5299 33 1 0.9444 1.0114 -2.5302 34 1 2.7208 3.3621 -7.6330 35 1 2.2066 1.4079 2.1315 36 1 3.9484 3.1302 2.2425 37 1 4.2528 2.6798 0.5074 38 1 7.2164 5.5499 -0.8334 39 1 5.7525 6.9607 -3.1101 40 1 7.4808 6.5344 -3.0937 41 1 6.2477 5.2511 -3.0964 42 1 6.8105 7.6694 0.3879 43 1 7.8095 7.9468 -1.0586 44 1 6.0811 8.3729 -1.0754 45 1 0.5489 3.4052 0.8255 46 1 1.2805 3.6526 2.4717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079341954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:19 Heat of formation + Delta-G solvation = 13.678398 kcal Electronic energy + Delta-G solvation = -27577.585799 eV Core-core repulsion = 23789.447935 eV Total energy + Delta-G solvation = -3788.137864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13725 -39.96844 -38.30813 -37.28959 -36.61555 -34.62129 -33.07660 -31.49107 -31.03263 -29.41010 -28.10635 -27.71180 -27.28300 -25.08386 -24.23357 -23.27153 -21.64103 -20.15500 -19.19152 -18.98795 -18.11489 -17.56957 -17.41498 -16.91968 -16.77511 -16.60758 -16.18260 -15.83370 -15.56329 -14.82781 -14.74551 -14.68510 -14.54141 -14.38422 -14.21218 -14.08275 -13.47585 -13.21397 -13.16295 -13.15298 -13.09564 -12.94884 -12.93900 -12.66264 -12.61398 -12.42359 -12.34790 -12.25414 -11.96207 -11.72905 -11.30847 -11.25264 -11.19046 -11.08541 -10.72881 -10.26049 -9.75023 -9.38867 -8.69275 -8.37603 -6.15769 0.66659 1.23469 1.30236 1.37525 1.43135 1.53816 1.62049 1.93157 2.06637 2.24782 2.64089 2.96365 3.06752 3.23973 3.37005 3.62692 3.94259 4.01863 4.08020 4.11466 4.16166 4.19598 4.32059 4.37876 4.42537 4.46336 4.49586 4.55819 4.61892 4.66637 4.72634 4.75611 4.86097 4.90694 5.00067 5.01520 5.03877 5.13642 5.29061 5.30892 5.37257 5.40684 5.72287 6.15962 6.29701 6.31755 6.65692 7.03258 7.13944 7.26740 8.71846 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007887 B = 0.004630 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3549.354691 B = 6045.885082 C = 8882.668104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.595 5.595 4 C 0.523 3.477 5 O -0.531 6.531 6 C -0.121 4.121 7 S -0.155 6.155 8 C -0.544 4.544 9 H 0.080 0.920 10 C 0.014 3.986 11 N -0.912 5.912 12 Si 0.998 3.002 13 H -0.255 1.255 14 H -0.276 1.276 15 H -0.271 1.271 16 C 0.131 3.869 17 C 0.097 3.903 18 N -0.610 5.610 19 C 0.670 3.330 20 O -0.605 6.605 21 C -0.248 4.248 22 C -0.081 4.081 23 C 0.013 3.987 24 C -0.145 4.145 25 C -0.138 4.138 26 C 0.089 3.911 27 H 0.025 0.975 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.270 0.730 35 H 0.185 0.815 36 H 0.138 0.862 37 H 0.061 0.939 38 H 0.125 0.875 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.037 0.963 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.001 -7.109 22.105 23.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.310 3.690 5 O -0.406 6.406 6 C -0.272 4.272 7 S 0.072 5.928 8 C -0.692 4.692 9 H 0.098 0.902 10 C -0.191 4.191 11 N -0.549 5.549 12 Si 0.820 3.180 13 H -0.179 1.179 14 H -0.201 1.201 15 H -0.196 1.196 16 C 0.026 3.974 17 C -0.025 4.025 18 N -0.341 5.341 19 C 0.462 3.538 20 O -0.489 6.489 21 C -0.251 4.251 22 C -0.083 4.083 23 C -0.004 4.004 24 C -0.203 4.203 25 C -0.195 4.195 26 C -0.033 4.033 27 H 0.044 0.956 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.202 0.798 36 H 0.156 0.844 37 H 0.079 0.921 38 H 0.142 0.858 39 H 0.061 0.939 40 H 0.121 0.879 41 H 0.057 0.943 42 H 0.085 0.915 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.157 -4.801 21.788 23.145 hybrid contribution -1.168 -1.288 -1.716 2.442 sum 4.989 -6.088 20.073 21.561 Atomic orbital electron populations 1.22215 0.95696 1.03275 1.01633 1.21901 0.94583 0.79837 1.05387 1.47803 1.66178 1.15351 1.03568 1.20107 0.77272 0.86183 0.85437 1.90780 1.44557 1.18262 1.87024 1.23393 1.05064 1.02974 0.95798 1.85708 1.87423 1.22176 0.97479 1.23205 1.51670 1.01555 0.92757 0.90170 1.26135 0.94135 0.97122 1.01705 1.70207 1.44395 1.17967 1.22344 0.84919 0.78176 0.78187 0.76751 1.17861 1.20110 1.19609 1.22829 0.93472 0.93371 0.87684 1.23885 0.94923 0.82577 1.01157 1.49485 1.13917 1.18984 1.51698 1.14103 0.83714 0.79321 0.76615 1.90721 1.42487 1.54724 1.60991 1.20961 0.94432 1.04219 1.05463 1.23525 0.95079 0.96260 0.93449 1.18763 0.85736 1.00142 0.95807 1.21838 1.03680 1.01487 0.93255 1.21825 1.03121 0.92802 1.01773 1.23988 0.90535 0.89285 0.99511 0.95607 0.89374 0.91139 0.90749 0.85443 0.87826 0.88830 0.92070 0.79845 0.84423 0.92070 0.85780 0.93914 0.87905 0.94340 0.91477 0.88312 0.93501 0.93064 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 71.98 0.74 -1.83 16 2 C 0.10 1.52 5.96 86.38 0.51 2.03 16 3 N -0.59 -13.51 2.73 -803.49 -2.19 -15.70 16 4 C 0.52 19.27 7.18 87.66 0.63 19.90 16 5 O -0.53 -24.15 9.45 -3.02 -0.03 -24.18 16 6 C -0.12 -5.00 4.71 71.24 0.34 -4.67 16 7 S -0.16 -9.00 20.57 -56.49 -1.16 -10.16 16 8 C -0.54 -32.07 9.50 67.95 0.65 -31.42 16 9 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 10 C 0.01 0.79 5.49 84.86 0.47 1.26 16 11 N -0.91 -57.96 13.22 21.65 0.29 -57.67 16 12 Si 1.00 44.73 29.55 68.60 2.03 46.75 16 13 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.13 2.08 4.72 46.75 0.22 2.30 16 17 C 0.10 2.02 7.53 86.44 0.65 2.67 16 18 N -0.61 -19.72 2.01 -845.49 -1.70 -21.42 16 19 C 0.67 29.73 5.74 85.49 0.49 30.22 16 20 O -0.60 -32.25 17.81 -4.07 -0.07 -32.33 16 21 C -0.25 -10.48 12.94 30.01 0.39 -10.09 16 22 C -0.08 -2.90 12.56 31.12 0.39 -2.50 16 23 C 0.01 0.33 3.30 -12.60 -0.04 0.29 16 24 C -0.15 -4.04 9.15 71.98 0.66 -3.38 16 25 C -0.14 -2.65 9.15 71.98 0.66 -1.99 16 26 C 0.09 2.02 8.28 86.49 0.72 2.73 16 27 H 0.02 0.57 7.22 -2.39 -0.02 0.55 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.26 6.44 -2.39 -0.02 1.25 16 31 H 0.13 0.72 7.96 -2.39 -0.02 0.70 16 32 H 0.10 3.86 7.40 -2.39 -0.02 3.84 16 33 H 0.09 3.70 7.19 -2.39 -0.02 3.68 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.18 0.59 7.97 -2.39 -0.02 0.57 16 36 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.63 7.47 -2.39 -0.02 1.61 16 38 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -98.13 398.57 5.60 -92.54 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.97 Total: 16.65 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 7.46 Total: 5.52 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.60 Total: -94.79 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -0.10 Total: -56.51 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -98.13 5.60 -92.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079341954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.215 kcal (2) G-P(sol) polarization free energy of solvation -98.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds