Wall clock time and date at job start Tue Mar 31 2020 21:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.46946 * 2 1 4 4 C 1.34779 * 120.00332 * 269.99773 * 3 2 1 5 5 O 1.21276 * 120.00409 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.99742 * 359.97438 * 4 3 2 7 7 S 1.80996 * 109.47295 * 180.02562 * 6 4 3 8 8 C 1.76198 * 100.00213 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99729 * 359.97438 * 8 7 6 10 10 C 1.38797 * 120.00316 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00302 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99700 * 359.97438 * 10 8 7 13 13 H 1.48490 * 109.47341 * 90.00269 * 12 10 8 14 14 H 1.48506 * 109.46812 * 210.00271 * 12 10 8 15 15 H 1.48505 * 109.47279 * 329.99986 * 12 10 8 16 16 C 1.46503 * 120.00163 * 89.99930 * 3 2 1 17 17 C 1.53498 * 114.20744 * 119.99948 * 16 3 2 18 18 N 1.47064 * 87.98664 * 87.52062 * 17 16 3 19 19 C 1.34780 * 136.05420 * 207.08853 * 18 17 16 20 20 O 1.21613 * 120.00241 * 359.97438 * 19 18 17 21 21 C 1.47105 * 119.99542 * 180.02562 * 19 18 17 22 22 C 1.32999 * 119.99655 * 174.03531 * 21 19 18 23 23 C 1.50702 * 120.00151 * 351.99010 * 22 21 19 24 24 C 1.52994 * 117.49992 * 178.56794 * 23 22 21 25 25 C 1.52996 * 60.00193 * 252.51028 * 24 23 22 26 26 C 1.47067 * 87.88725 * 27.34266 * 18 17 16 27 27 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47839 * 300.00494 * 1 2 3 29 29 H 1.09008 * 109.47103 * 60.00368 * 1 2 3 30 30 H 1.08997 * 109.47041 * 239.99959 * 2 1 3 31 31 H 1.08994 * 109.46607 * 119.99734 * 2 1 3 32 32 H 1.08995 * 109.47259 * 300.00264 * 6 4 3 33 33 H 1.09004 * 109.46847 * 60.00019 * 6 4 3 34 34 H 0.96995 * 120.00109 * 179.97438 * 11 10 8 35 35 H 1.08996 * 113.28103 * 346.93374 * 16 3 2 36 36 H 1.09000 * 113.46614 * 332.73486 * 17 16 3 37 37 H 1.09000 * 113.46819 * 202.30598 * 17 16 3 38 38 H 1.07995 * 120.00113 * 354.03204 * 21 19 18 39 39 H 1.07999 * 119.99856 * 172.26225 * 22 21 19 40 40 H 1.09003 * 115.54733 * 324.27787 * 23 22 21 41 41 H 1.09002 * 117.49769 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.50080 * 145.01872 * 24 23 22 43 43 H 1.08997 * 117.50094 * 252.51490 * 25 24 23 44 44 H 1.09005 * 117.52109 * 107.47970 * 25 24 23 45 45 H 1.08995 * 113.46420 * 87.43602 * 26 18 17 46 46 H 1.09000 * 113.46875 * 217.88141 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6476 3.1598 -1.1672 6 6 1.9924 1.3059 -2.4723 7 16 2.3851 2.4146 -3.8480 8 6 2.0116 1.3587 -5.2082 9 1 1.6566 0.3543 -5.0305 10 6 2.1748 1.8172 -6.5081 11 7 1.8963 1.0281 -7.5242 12 14 2.7895 3.5542 -6.8154 13 1 4.2722 3.5475 -6.8960 14 1 2.2266 4.0596 -8.0933 15 1 2.3583 4.4363 -5.7013 16 6 2.2624 2.0718 1.2687 17 6 3.7125 2.5360 1.4638 18 7 3.3539 3.7791 0.7646 19 6 4.0044 4.6979 0.0235 20 8 5.1953 4.5747 -0.1898 21 6 3.2740 5.8503 -0.5264 22 6 3.9349 6.8176 -1.1560 23 6 5.4418 6.8275 -1.1506 24 6 6.1437 7.9477 -1.9209 25 6 6.1551 6.5192 -2.4686 26 6 1.9747 3.5819 1.2354 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.6229 0.4187 -2.5298 33 1 0.9445 1.0114 -2.5303 34 1 2.0099 1.3487 -8.4326 35 1 1.8393 1.5541 2.1295 36 1 4.4390 1.9284 0.9242 37 1 3.9827 2.6880 2.5088 38 1 2.2011 5.9109 -0.4188 39 1 3.3915 7.5983 -1.6675 40 1 5.9110 6.4782 -0.2308 41 1 5.5154 8.6777 -2.4313 42 1 7.0747 8.3358 -1.5079 43 1 7.0936 5.9674 -2.4158 44 1 5.5343 6.3087 -3.3396 45 1 1.7868 4.0098 2.2201 46 1 1.2207 3.8655 0.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079342173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:14 Heat of formation + Delta-G solvation = 51.752762 kcal Electronic energy + Delta-G solvation = -28143.360192 eV Core-core repulsion = 24356.873357 eV Total energy + Delta-G solvation = -3786.486835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.11583 -38.87360 -37.56360 -36.52009 -35.55894 -32.43449 -32.16411 -30.62270 -29.68937 -28.29867 -26.14235 -25.61391 -23.90387 -23.32986 -22.21482 -22.04292 -20.53302 -18.85611 -18.24670 -17.63812 -17.04369 -16.74966 -16.33716 -15.65944 -15.29141 -15.05065 -14.94966 -14.64748 -14.04150 -13.99160 -13.81772 -13.49647 -13.31016 -13.12228 -12.90024 -12.79279 -12.66105 -12.42699 -12.15799 -11.91254 -11.78631 -11.41332 -11.27268 -11.26035 -11.19921 -11.04497 -10.99769 -10.72952 -10.58939 -10.12969 -9.85391 -9.42217 -9.13528 -8.99831 -8.78334 -8.68821 -8.46388 -8.03264 -6.89280 -6.28800 -3.99405 1.72787 2.65163 2.91822 3.10696 3.13922 3.33976 3.49761 3.58099 3.75082 4.21714 4.23817 4.33013 4.48113 4.72307 4.79255 4.89257 4.93591 5.04135 5.10070 5.13094 5.18333 5.19478 5.26260 5.32110 5.33219 5.45623 5.50745 5.54158 5.66063 5.67957 5.70317 5.72599 5.78829 5.82665 5.94726 6.04312 6.13385 6.16877 6.33724 6.47259 6.60010 6.61199 6.77110 7.42384 7.94323 8.10987 8.41395 8.50763 8.71187 9.17878 10.80550 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007617 B = 0.005821 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.060305 B = 4808.984738 C = 8016.438654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.603 5.603 4 C 0.528 3.472 5 O -0.491 6.491 6 C -0.120 4.120 7 S -0.138 6.138 8 C -0.521 4.521 9 H 0.087 0.913 10 C 0.097 3.903 11 N -0.881 5.881 12 Si 0.856 3.144 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.236 1.236 16 C 0.112 3.888 17 C 0.087 3.913 18 N -0.612 5.612 19 C 0.608 3.392 20 O -0.547 6.547 21 C -0.177 4.177 22 C -0.055 4.055 23 C -0.114 4.114 24 C -0.193 4.193 25 C -0.153 4.153 26 C 0.097 3.903 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.270 0.730 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 4.008 21.557 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 N -0.339 5.339 4 C 0.315 3.685 5 O -0.363 6.363 6 C -0.271 4.271 7 S 0.088 5.912 8 C -0.668 4.668 9 H 0.105 0.895 10 C -0.112 4.112 11 N -0.518 5.518 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.160 1.160 16 C 0.006 3.994 17 C -0.038 4.038 18 N -0.347 5.347 19 C 0.403 3.597 20 O -0.427 6.427 21 C -0.198 4.198 22 C -0.075 4.075 23 C -0.132 4.132 24 C -0.230 4.230 25 C -0.190 4.190 26 C -0.028 4.028 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.055 5.779 21.074 21.852 hybrid contribution -0.528 -0.998 -0.541 1.252 sum -0.583 4.781 20.533 21.090 Atomic orbital electron populations 1.22231 0.95767 1.02358 1.02704 1.21573 0.94516 0.81892 1.03485 1.47698 1.67701 1.14176 1.04313 1.20304 0.76687 0.87074 0.84396 1.90718 1.42094 1.17156 1.86336 1.23344 1.05002 1.03275 0.95446 1.84811 1.88136 1.20917 0.97330 1.22319 1.51534 1.01971 0.91005 0.89528 1.24691 0.93777 0.97835 0.94893 1.69936 1.46750 1.36212 0.98864 0.86750 0.80346 0.85147 0.79700 1.19219 1.20006 1.16013 1.22348 0.96387 0.93405 0.87299 1.23360 0.97527 0.85751 0.97142 1.48966 1.10681 1.24740 1.50306 1.17563 0.85334 0.80826 0.75989 1.90725 1.15398 1.76681 1.59878 1.22302 0.99718 0.94526 1.03221 1.22953 0.94179 0.96709 0.93642 1.21308 0.91618 1.02113 0.98125 1.23073 1.02589 0.92056 1.05239 1.22776 1.02191 0.97155 0.96861 1.23217 0.86846 0.93375 0.99330 0.91482 0.92422 0.91951 0.89802 0.90397 0.89039 0.88786 0.91980 0.86739 0.90630 0.89585 0.86374 0.86058 0.85927 0.89172 0.89094 0.88826 0.88807 0.89636 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 2 C 0.11 0.97 5.95 -4.05 -0.02 0.95 16 3 N -0.60 -7.14 2.74 -165.74 -0.45 -7.60 16 4 C 0.53 8.91 7.25 -10.98 -0.08 8.83 16 5 O -0.49 -9.53 8.89 5.56 0.05 -9.48 16 6 C -0.12 -2.30 4.71 36.01 0.17 -2.13 16 7 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 8 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 9 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 10 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 11 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 12 Si 0.86 22.13 27.74 -169.99 -4.71 17.41 16 13 H -0.27 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.24 -6.07 6.74 56.52 0.38 -5.69 16 16 C 0.11 1.04 4.88 -67.67 -0.33 0.70 16 17 C 0.09 0.99 8.18 -8.50 -0.07 0.92 16 18 N -0.61 -8.83 2.09 -186.47 -0.39 -9.22 16 19 C 0.61 10.81 5.77 -12.66 -0.07 10.74 16 20 O -0.55 -11.39 14.20 5.27 0.07 -11.31 16 21 C -0.18 -2.83 9.19 -37.80 -0.35 -3.18 16 22 C -0.06 -0.83 9.74 -36.12 -0.35 -1.18 16 23 C -0.11 -1.76 4.18 -91.77 -0.38 -2.14 16 24 C -0.19 -2.47 10.23 -26.74 -0.27 -2.75 16 25 C -0.15 -2.42 10.23 -26.73 -0.27 -2.69 16 26 C 0.10 1.01 7.28 -8.36 -0.06 0.95 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.65 7.22 -51.92 -0.38 0.28 16 30 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 31 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 33 H 0.09 1.69 7.19 -51.91 -0.37 1.32 16 34 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.11 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.12 1.70 7.99 -52.49 -0.42 1.28 16 39 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 2.06 6.51 -51.93 -0.34 1.72 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 44 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.08 1.00 7.36 -51.93 -0.38 0.62 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -36.33 386.48 -9.58 -45.92 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.25 Total: 3.90 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.50 Total: -4.00 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.07 Total: -42.78 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: 0.12 Total: -20.79 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.41 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.33 -9.58 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.669 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds