Wall clock time and date at job start Tue Mar 31 2020 21:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.46946 * 2 1 4 4 C 1.34779 * 120.00332 * 269.99773 * 3 2 1 5 5 O 1.21276 * 120.00409 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.99742 * 359.97438 * 4 3 2 7 7 S 1.80996 * 109.47295 * 180.02562 * 6 4 3 8 8 C 1.76198 * 100.00213 * 180.02562 * 7 6 4 9 9 H 1.07997 * 119.99729 * 359.97438 * 8 7 6 10 10 C 1.38797 * 120.00316 * 180.02562 * 8 7 6 11 11 N 1.31631 * 120.00302 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99700 * 359.97438 * 10 8 7 13 13 H 1.48490 * 109.47341 * 90.00269 * 12 10 8 14 14 H 1.48506 * 109.46812 * 210.00271 * 12 10 8 15 15 H 1.48505 * 109.47279 * 329.99986 * 12 10 8 16 16 C 1.46503 * 120.00163 * 89.99930 * 3 2 1 17 17 C 1.53498 * 114.20744 * 119.99948 * 16 3 2 18 18 N 1.47064 * 87.98664 * 87.52062 * 17 16 3 19 19 C 1.34780 * 136.05420 * 207.08853 * 18 17 16 20 20 O 1.21613 * 120.00241 * 359.97438 * 19 18 17 21 21 C 1.47105 * 119.99542 * 180.02562 * 19 18 17 22 22 C 1.32999 * 119.99655 * 174.03531 * 21 19 18 23 23 C 1.50702 * 120.00151 * 351.99010 * 22 21 19 24 24 C 1.52994 * 117.49992 * 178.56794 * 23 22 21 25 25 C 1.52996 * 60.00193 * 252.51028 * 24 23 22 26 26 C 1.47067 * 87.88725 * 27.34266 * 18 17 16 27 27 H 1.08997 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47839 * 300.00494 * 1 2 3 29 29 H 1.09008 * 109.47103 * 60.00368 * 1 2 3 30 30 H 1.08997 * 109.47041 * 239.99959 * 2 1 3 31 31 H 1.08994 * 109.46607 * 119.99734 * 2 1 3 32 32 H 1.08995 * 109.47259 * 300.00264 * 6 4 3 33 33 H 1.09004 * 109.46847 * 60.00019 * 6 4 3 34 34 H 0.96995 * 120.00109 * 179.97438 * 11 10 8 35 35 H 1.08996 * 113.28103 * 346.93374 * 16 3 2 36 36 H 1.09000 * 113.46614 * 332.73486 * 17 16 3 37 37 H 1.09000 * 113.46819 * 202.30598 * 17 16 3 38 38 H 1.07995 * 120.00113 * 354.03204 * 21 19 18 39 39 H 1.07999 * 119.99856 * 172.26225 * 22 21 19 40 40 H 1.09003 * 115.54733 * 324.27787 * 23 22 21 41 41 H 1.09002 * 117.49769 * 0.02562 * 24 23 22 42 42 H 1.09001 * 117.50080 * 145.01872 * 24 23 22 43 43 H 1.08997 * 117.50094 * 252.51490 * 25 24 23 44 44 H 1.09005 * 117.52109 * 107.47970 * 25 24 23 45 45 H 1.08995 * 113.46420 * 87.43602 * 26 18 17 46 46 H 1.09000 * 113.46875 * 217.88141 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1672 5 8 2.6476 3.1598 -1.1672 6 6 1.9924 1.3059 -2.4723 7 16 2.3851 2.4146 -3.8480 8 6 2.0116 1.3587 -5.2082 9 1 1.6566 0.3543 -5.0305 10 6 2.1748 1.8172 -6.5081 11 7 1.8963 1.0281 -7.5242 12 14 2.7895 3.5542 -6.8154 13 1 4.2722 3.5475 -6.8960 14 1 2.2266 4.0596 -8.0933 15 1 2.3583 4.4363 -5.7013 16 6 2.2624 2.0718 1.2687 17 6 3.7125 2.5360 1.4638 18 7 3.3539 3.7791 0.7646 19 6 4.0044 4.6979 0.0235 20 8 5.1953 4.5747 -0.1898 21 6 3.2740 5.8503 -0.5264 22 6 3.9349 6.8176 -1.1560 23 6 5.4418 6.8275 -1.1506 24 6 6.1437 7.9477 -1.9209 25 6 6.1551 6.5192 -2.4686 26 6 1.9747 3.5819 1.2354 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 2.6229 0.4187 -2.5298 33 1 0.9445 1.0114 -2.5303 34 1 2.0099 1.3487 -8.4326 35 1 1.8393 1.5541 2.1295 36 1 4.4390 1.9284 0.9242 37 1 3.9827 2.6880 2.5088 38 1 2.2011 5.9109 -0.4188 39 1 3.3915 7.5983 -1.6675 40 1 5.9110 6.4782 -0.2308 41 1 5.5154 8.6777 -2.4313 42 1 7.0747 8.3358 -1.5079 43 1 7.0936 5.9674 -2.4158 44 1 5.5343 6.3087 -3.3396 45 1 1.7868 4.0098 2.2201 46 1 1.2207 3.8655 0.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079342173.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:13 Heat of formation + Delta-G solvation = 29.081783 kcal Electronic energy + Delta-G solvation = -28144.343279 eV Core-core repulsion = 24356.873357 eV Total energy + Delta-G solvation = -3787.469923 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16085 -40.10723 -38.71447 -37.72040 -36.60012 -34.70950 -33.35023 -31.51875 -31.06295 -29.41978 -27.88934 -27.00367 -25.02973 -24.16301 -23.34369 -23.11476 -21.70695 -20.31110 -19.54008 -19.09642 -18.27069 -17.88689 -17.43286 -17.12730 -16.81292 -16.50704 -16.20436 -15.89941 -15.66989 -15.09966 -14.98445 -14.77901 -14.66469 -14.44344 -14.23345 -14.01035 -13.66190 -13.40315 -13.39439 -13.16415 -13.08140 -12.98776 -12.66115 -12.60090 -12.45261 -12.43357 -12.01832 -11.95418 -11.90748 -11.84042 -11.27428 -11.21808 -10.71039 -10.52318 -10.38064 -9.98653 -9.70410 -9.10842 -9.00122 -8.55764 -6.24504 0.53855 0.95699 1.25831 1.40747 1.50348 1.60811 2.06201 2.13851 2.19904 2.55484 2.67346 2.82675 3.06982 3.38089 3.50409 3.69617 3.88419 4.03654 4.07107 4.12936 4.15393 4.19253 4.32939 4.36110 4.39751 4.46780 4.52527 4.56439 4.60980 4.67837 4.72186 4.73720 4.78494 4.95611 5.03374 5.05797 5.07020 5.20692 5.28541 5.41738 5.42588 5.65321 5.66814 5.73842 6.06817 6.30567 6.90086 7.00810 7.25322 7.49516 8.56977 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007617 B = 0.005821 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3675.060305 B = 4808.984738 C = 8016.438654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.591 5.591 4 C 0.524 3.476 5 O -0.520 6.520 6 C -0.105 4.105 7 S -0.172 6.172 8 C -0.528 4.528 9 H 0.059 0.941 10 C 0.049 3.951 11 N -0.916 5.916 12 Si 0.911 3.089 13 H -0.269 1.269 14 H -0.256 1.256 15 H -0.237 1.237 16 C 0.123 3.877 17 C 0.082 3.918 18 N -0.624 5.624 19 C 0.592 3.408 20 O -0.597 6.597 21 C -0.192 4.192 22 C -0.057 4.057 23 C -0.125 4.125 24 C -0.156 4.156 25 C -0.179 4.179 26 C 0.098 3.902 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.277 0.723 35 H 0.176 0.824 36 H 0.043 0.957 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.130 0.870 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.524 4.593 24.638 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.311 3.689 5 O -0.395 6.395 6 C -0.256 4.256 7 S 0.055 5.945 8 C -0.675 4.675 9 H 0.078 0.922 10 C -0.157 4.157 11 N -0.554 5.554 12 Si 0.734 3.266 13 H -0.194 1.194 14 H -0.180 1.180 15 H -0.161 1.161 16 C 0.019 3.981 17 C -0.042 4.042 18 N -0.357 5.357 19 C 0.387 3.613 20 O -0.481 6.481 21 C -0.213 4.213 22 C -0.076 4.076 23 C -0.143 4.143 24 C -0.192 4.192 25 C -0.216 4.216 26 C -0.025 4.025 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.137 0.863 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.193 0.807 36 H 0.062 0.938 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.164 0.836 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.241 6.305 24.208 25.047 hybrid contribution -0.226 -1.363 -1.348 1.930 sum -1.467 4.942 22.861 23.435 Atomic orbital electron populations 1.22181 0.94815 1.03267 1.02202 1.21850 0.95188 0.80135 1.04751 1.47676 1.66008 1.15128 1.03720 1.19930 0.77193 0.86757 0.85058 1.90744 1.43687 1.18235 1.86809 1.23314 1.05601 1.01974 0.94701 1.84717 1.88449 1.22566 0.98768 1.22469 1.50941 1.01447 0.92689 0.92241 1.25494 0.94008 1.01364 0.94804 1.70008 1.47897 1.38007 0.99503 0.85914 0.79588 0.80947 0.80177 1.19439 1.17991 1.16097 1.22674 0.94919 0.93336 0.87206 1.23671 0.98065 0.84180 0.98303 1.49171 1.12705 1.24531 1.49246 1.17901 0.85051 0.81868 0.76454 1.90683 1.17305 1.78098 1.62024 1.22472 1.00275 0.94547 1.04008 1.23264 0.94113 0.97111 0.93142 1.21235 0.92084 1.03940 0.97028 1.23181 1.02986 0.90538 1.02545 1.22725 1.01862 1.00324 0.96700 1.23527 0.84177 0.94160 1.00644 0.89918 0.90471 0.94838 0.91455 0.86340 0.88800 0.87731 0.91373 0.80657 0.93842 0.85813 0.85206 0.83633 0.87794 0.87165 0.87168 0.89728 0.90543 0.85264 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 71.98 0.74 -1.46 16 2 C 0.10 1.50 5.95 86.38 0.51 2.01 16 3 N -0.59 -12.45 2.74 -796.66 -2.19 -14.64 16 4 C 0.52 17.43 7.25 87.66 0.64 18.07 16 5 O -0.52 -20.28 8.89 -3.02 -0.03 -20.31 16 6 C -0.10 -4.08 4.71 71.24 0.34 -3.74 16 7 S -0.17 -8.89 18.55 -56.49 -1.05 -9.94 16 8 C -0.53 -31.48 10.04 67.95 0.68 -30.79 16 9 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 10 C 0.05 2.93 5.50 84.86 0.47 3.40 16 11 N -0.92 -56.76 13.97 21.65 0.30 -56.46 16 12 Si 0.91 46.55 27.74 68.60 1.90 48.46 16 13 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 14 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 16 C 0.12 1.75 4.88 45.55 0.22 1.97 16 17 C 0.08 1.65 8.18 83.18 0.68 2.33 16 18 N -0.62 -17.26 2.09 -862.11 -1.80 -19.06 16 19 C 0.59 21.47 5.77 86.57 0.50 21.97 16 20 O -0.60 -26.08 14.20 -4.07 -0.06 -26.14 16 21 C -0.19 -6.21 9.19 23.43 0.22 -5.99 16 22 C -0.06 -1.71 9.74 24.52 0.24 -1.47 16 23 C -0.12 -3.93 4.18 -11.54 -0.05 -3.98 16 24 C -0.16 -3.81 10.23 30.59 0.31 -3.50 16 25 C -0.18 -5.87 10.23 30.59 0.31 -5.56 16 26 C 0.10 1.72 7.28 83.27 0.61 2.32 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.03 0.64 7.22 -2.38 -0.02 0.62 16 30 H 0.07 1.24 6.44 -2.39 -0.02 1.22 16 31 H 0.12 0.88 8.07 -2.39 -0.02 0.86 16 32 H 0.09 3.57 7.40 -2.40 -0.02 3.56 16 33 H 0.10 3.81 7.19 -2.39 -0.02 3.79 16 34 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.18 0.57 8.10 -2.39 -0.02 0.55 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.13 3.70 7.99 -2.91 -0.02 3.68 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 40 H 0.10 3.67 6.51 -2.39 -0.02 3.65 16 41 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 45 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 1.40 7.36 -2.39 -0.02 1.38 16 Total: -1.00 -85.66 386.48 4.43 -81.23 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.93 Total: 21.29 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 6.41 Total: -4.43 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -3.68 Total: -90.16 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.08 Total: -46.45 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.46 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.94 kcal Total: -85.66 4.43 -81.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079342173.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.317 kcal (2) G-P(sol) polarization free energy of solvation -85.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds